Strain Fitness in Shewanella loihica PV-4 around Shew_0812

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0811 and lysS are separated by 12 nucleotideslysS and Shew_0813 are separated by 265 nucleotides Shew_0811: Shew_0811 - peptide chain release factor 2 (RefSeq), at 933,056 to 933,937 _0811 Shew_0812: lysS - lysyl-tRNA synthetase (RefSeq), at 933,950 to 935,452 lysS Shew_0813: Shew_0813 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 935,718 to 938,231 _0813 Position (kb) 933 934 935 936Strain fitness (log2 ratio) -1 0 1at 935.799 kb on + strandat 935.935 kb on - strandat 936.154 kb on - strand, within Shew_0813at 936.163 kb on - strand, within Shew_0813at 936.361 kb on + strand, within Shew_0813

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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935,799 + -0.6
935,935 - -0.2
936,154 - Shew_0813 0.17 -0.7
936,163 - Shew_0813 0.18 -0.2
936,361 + Shew_0813 0.26 +0.2

Or see this region's nucleotide sequence