Strain Fitness in Shewanella loihica PV-4 around Shew_0783

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0781 and Shew_0782 are separated by 220 nucleotidesShew_0782 and Shew_0783 are separated by 134 nucleotidesShew_0783 and Shew_0784 are separated by 93 nucleotidesShew_0784 and Shew_0785 are separated by 25 nucleotidesShew_0785 and Shew_0786 overlap by 26 nucleotides Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573 _0781 Shew_0782: Shew_0782 - DNA-binding transcriptional regulator AsnC (RefSeq), at 896,794 to 897,255 _0782 Shew_0783: Shew_0783 - pseudouridylate synthase (RefSeq), at 897,390 to 898,067 _0783 Shew_0784: Shew_0784 - hypothetical protein (RefSeq), at 898,161 to 898,448 _0784 Shew_0785: Shew_0785 - methyltransferase type 12 (RefSeq), at 898,474 to 899,004 _0785 Shew_0786: Shew_0786 - hypothetical protein (RefSeq), at 898,979 to 899,395 _0786 Position (kb) 897 898 899Strain fitness (log2 ratio) -1 0 1at 896.504 kb on + strandat 896.800 kb on - strandat 896.973 kb on + strand, within Shew_0782at 897.066 kb on + strand, within Shew_0782at 897.073 kb on - strand, within Shew_0782at 897.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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896,504 + +1.3
896,800 - -1.6
896,973 + Shew_0782 0.39 -0.2
897,066 + Shew_0782 0.59 +0.3
897,073 - Shew_0782 0.60 -1.2
897,398 - -0.3

Or see this region's nucleotide sequence