Strain Fitness in Shewanella loihica PV-4 around Shew_0773

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0772 and Shew_0773 are separated by 138 nucleotidesShew_0773 and Shew_0774 are separated by 206 nucleotides Shew_0772: Shew_0772 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 881,086 to 882,810 _0772 Shew_0773: Shew_0773 - fructose-1,6-bisphosphatase (RefSeq), at 882,949 to 883,938 _0773 Shew_0774: Shew_0774 - peptidase S9B dipeptidylpeptidase IV subunit (RefSeq), at 884,145 to 886,397 _0774 Position (kb) 882 883 884Strain fitness (log2 ratio) -1 0 1 2at 882.102 kb on - strand, within Shew_0772at 882.688 kb on + strandat 882.742 kb on - strandat 882.788 kb on - strandat 882.808 kb on - strandat 882.844 kb on - strandat 882.947 kb on + strandat 882.954 kb on + strandat 884.121 kb on - strandat 884.164 kb on + strandat 884.227 kb on - strandat 884.319 kb on - strandat 884.337 kb on + strandat 884.622 kb on - strand, within Shew_0774at 884.924 kb on + strand, within Shew_0774at 884.932 kb on - strand, within Shew_0774at 884.932 kb on - strand, within Shew_0774

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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882,102 - Shew_0772 0.59 -0.7
882,688 + -0.4
882,742 - -0.5
882,788 - +0.5
882,808 - +2.3
882,844 - -0.1
882,947 + -0.4
882,954 + -0.7
884,121 - +0.6
884,164 + +0.4
884,227 - -0.1
884,319 - +0.3
884,337 + +0.1
884,622 - Shew_0774 0.21 +0.3
884,924 + Shew_0774 0.35 +0.8
884,932 - Shew_0774 0.35 -0.2
884,932 - Shew_0774 0.35 +0.5

Or see this region's nucleotide sequence