Strain Fitness in Shewanella loihica PV-4 around Shew_0752

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0751 and Shew_0752 are separated by 523 nucleotidesShew_0752 and Shew_0753 are separated by 133 nucleotides Shew_0751: Shew_0751 - S-adenosylmethionine synthetase (RefSeq), at 850,608 to 851,759 _0751 Shew_0752: Shew_0752 - transketolase (RefSeq), at 852,283 to 854,277 _0752 Shew_0753: Shew_0753 - erythrose 4-phosphate dehydrogenase (RefSeq), at 854,411 to 855,427 _0753 Position (kb) 852 853 854 855Strain fitness (log2 ratio) -1 0 1at 851.889 kb on + strandat 851.994 kb on + strandat 851.994 kb on + strandat 852.028 kb on + strandat 852.032 kb on - strandat 852.038 kb on + strandat 852.038 kb on + strandat 852.043 kb on + strandat 854.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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851,889 + +0.4
851,994 + -0.4
851,994 + +0.1
852,028 + -0.3
852,032 - -0.1
852,038 + +0.1
852,038 + -0.4
852,043 + +0.3
854,278 + -0.7

Or see this region's nucleotide sequence