Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0735 and Shew_0736 are separated by 104 nucleotides Shew_0736 and Shew_0737 are separated by 123 nucleotides
Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327
_0735
Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472
_0736
Shew_0737: Shew_0737 - MarR family transcriptional regulator (RefSeq), at 838,596 to 839,564
_0737
Position (kb) 837
838
839 Strain fitness (log2 ratio) -1
0
1 at 836.608 kb on - strand, within Shew_0735 at 836.762 kb on + strand, within Shew_0735 at 837.045 kb on - strand, within Shew_0735 at 837.097 kb on - strand, within Shew_0735 at 837.591 kb on + strand, within Shew_0736 at 837.967 kb on + strand, within Shew_0736 at 838.136 kb on - strand, within Shew_0736 at 838.444 kb on - strand at 838.444 kb on - strand at 838.457 kb on + strand at 838.465 kb on - strand at 838.465 kb on - strand at 838.495 kb on + strand at 838.799 kb on - strand, within Shew_0737 at 838.911 kb on + strand, within Shew_0737 at 839.083 kb on + strand, within Shew_0737 at 839.086 kb on - strand, within Shew_0737 at 839.096 kb on - strand, within Shew_0737 at 839.144 kb on + strand, within Shew_0737 at 839.157 kb on - strand, within Shew_0737 at 839.228 kb on - strand, within Shew_0737 at 839.445 kb on - strand, within Shew_0737 at 839.445 kb on - strand, within Shew_0737
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 836,608 - Shew_0735 0.41 +0.1 836,762 + Shew_0735 0.53 -1.2 837,045 - Shew_0735 0.77 +0.2 837,097 - Shew_0735 0.81 -0.4 837,591 + Shew_0736 0.15 +0.1 837,967 + Shew_0736 0.51 -0.2 838,136 - Shew_0736 0.68 -0.2 838,444 - -0.0 838,444 - -0.2 838,457 + +0.1 838,465 - +0.8 838,465 - +0.3 838,495 + -0.5 838,799 - Shew_0737 0.21 -0.4 838,911 + Shew_0737 0.33 +0.6 839,083 + Shew_0737 0.50 -0.3 839,086 - Shew_0737 0.51 +0.4 839,096 - Shew_0737 0.52 +0.9 839,144 + Shew_0737 0.57 +0.1 839,157 - Shew_0737 0.58 +0.5 839,228 - Shew_0737 0.65 +0.3 839,445 - Shew_0737 0.88 +0.1 839,445 - Shew_0737 0.88 +1.0
Or see this region's nucleotide sequence