Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0705 and Shew_0706 are separated by 100 nucleotides Shew_0706 and Shew_0707 are separated by 142 nucleotides Shew_0707 and Shew_0708 are separated by 117 nucleotides
Shew_0705: Shew_0705 - hypothetical protein (RefSeq), at 799,500 to 800,441
_0705
Shew_0706: Shew_0706 - short-chain dehydrogenase/reductase SDR (RefSeq), at 800,542 to 801,219
_0706
Shew_0707: Shew_0707 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 801,362 to 801,841
_0707
Shew_0708: Shew_0708 - hypothetical protein (RefSeq), at 801,959 to 802,786
_0708
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2 at 799.546 kb on + strand at 799.855 kb on - strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.936 kb on + strand, within Shew_0705 at 799.944 kb on - strand, within Shew_0705 at 800.062 kb on + strand, within Shew_0705 at 800.306 kb on + strand, within Shew_0705 at 800.306 kb on + strand, within Shew_0705 at 800.372 kb on + strand at 800.522 kb on - strand at 800.525 kb on + strand at 800.525 kb on + strand at 800.530 kb on + strand at 800.533 kb on - strand at 800.540 kb on + strand at 800.809 kb on - strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 801.240 kb on + strand at 801.240 kb on + strand at 801.248 kb on - strand at 801.248 kb on - strand at 801.478 kb on + strand, within Shew_0707 at 801.486 kb on - strand, within Shew_0707 at 801.506 kb on - strand, within Shew_0707 at 801.773 kb on + strand, within Shew_0707 at 801.845 kb on - strand at 801.904 kb on - strand at 801.949 kb on + strand at 802.189 kb on - strand, within Shew_0708
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 799,546 + +0.2 799,855 - Shew_0705 0.38 -0.8 799,936 + Shew_0705 0.46 -0.3 799,936 + Shew_0705 0.46 +0.0 799,936 + Shew_0705 0.46 +0.4 799,936 + Shew_0705 0.46 -1.7 799,944 - Shew_0705 0.47 +1.9 800,062 + Shew_0705 0.60 -0.1 800,306 + Shew_0705 0.86 +0.3 800,306 + Shew_0705 0.86 -0.3 800,372 + +0.1 800,522 - +1.0 800,525 + -0.2 800,525 + -0.1 800,530 + +0.1 800,533 - +0.6 800,540 + +0.6 800,809 - Shew_0706 0.39 +0.7 800,982 + Shew_0706 0.65 +0.8 800,982 + Shew_0706 0.65 +0.2 801,240 + +0.5 801,240 + +0.1 801,248 - +0.5 801,248 - -0.8 801,478 + Shew_0707 0.24 -0.1 801,486 - Shew_0707 0.26 +0.3 801,506 - Shew_0707 0.30 -1.8 801,773 + Shew_0707 0.86 +1.2 801,845 - +1.3 801,904 - +0.3 801,949 + -1.5 802,189 - Shew_0708 0.28 -0.6
Or see this region's nucleotide sequence