Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0654 and Shew_0655 overlap by 4 nucleotides Shew_0655 and Shew_0656 are separated by 24 nucleotides
Shew_0654: Shew_0654 - peptidase M16 domain-containing protein (RefSeq), at 741,108 to 742,550
_0654
Shew_0655: Shew_0655 - peptidase M16 domain-containing protein (RefSeq), at 742,547 to 743,971
_0655
Shew_0656: Shew_0656 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 743,996 to 745,531
_0656
Position (kb) 742
743
744 Strain fitness (log2 ratio) -1
0
1 at 741.645 kb on + strand, within Shew_0654 at 741.671 kb on + strand, within Shew_0654 at 741.671 kb on + strand, within Shew_0654 at 741.779 kb on + strand, within Shew_0654 at 741.826 kb on - strand, within Shew_0654 at 741.826 kb on - strand, within Shew_0654 at 741.826 kb on - strand, within Shew_0654 at 741.915 kb on + strand, within Shew_0654 at 741.996 kb on - strand, within Shew_0654 at 742.103 kb on + strand, within Shew_0654 at 742.106 kb on - strand, within Shew_0654 at 742.203 kb on + strand, within Shew_0654 at 742.349 kb on + strand, within Shew_0654 at 742.459 kb on + strand at 742.648 kb on + strand at 742.649 kb on + strand at 742.855 kb on + strand, within Shew_0655 at 742.861 kb on + strand, within Shew_0655 at 742.986 kb on + strand, within Shew_0655 at 742.986 kb on + strand, within Shew_0655 at 743.011 kb on + strand, within Shew_0655 at 743.128 kb on + strand, within Shew_0655 at 743.262 kb on - strand, within Shew_0655 at 743.703 kb on + strand, within Shew_0655 at 743.766 kb on - strand, within Shew_0655 at 743.809 kb on + strand, within Shew_0655 at 743.809 kb on + strand, within Shew_0655 at 743.817 kb on - strand, within Shew_0655 at 743.854 kb on + strand at 744.007 kb on - strand at 744.088 kb on + strand at 744.104 kb on + strand at 744.130 kb on - strand at 744.179 kb on + strand, within Shew_0656 at 744.179 kb on + strand, within Shew_0656 at 744.187 kb on - strand, within Shew_0656 at 744.345 kb on - strand, within Shew_0656 at 744.418 kb on + strand, within Shew_0656 at 744.773 kb on + strand, within Shew_0656 at 744.922 kb on + strand, within Shew_0656
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 741,645 + Shew_0654 0.37 +0.8 741,671 + Shew_0654 0.39 +0.1 741,671 + Shew_0654 0.39 -0.7 741,779 + Shew_0654 0.47 -0.3 741,826 - Shew_0654 0.50 -0.9 741,826 - Shew_0654 0.50 +0.0 741,826 - Shew_0654 0.50 +0.7 741,915 + Shew_0654 0.56 -0.9 741,996 - Shew_0654 0.62 +0.3 742,103 + Shew_0654 0.69 +0.2 742,106 - Shew_0654 0.69 +0.0 742,203 + Shew_0654 0.76 -0.1 742,349 + Shew_0654 0.86 +0.1 742,459 + -1.3 742,648 + +0.2 742,649 + +0.0 742,855 + Shew_0655 0.22 +0.2 742,861 + Shew_0655 0.22 -0.5 742,986 + Shew_0655 0.31 -1.5 742,986 + Shew_0655 0.31 -1.5 743,011 + Shew_0655 0.33 -0.4 743,128 + Shew_0655 0.41 -0.0 743,262 - Shew_0655 0.50 -0.8 743,703 + Shew_0655 0.81 +0.3 743,766 - Shew_0655 0.86 +0.1 743,809 + Shew_0655 0.89 -0.2 743,809 + Shew_0655 0.89 +0.2 743,817 - Shew_0655 0.89 +0.1 743,854 + +0.5 744,007 - -0.0 744,088 + +0.1 744,104 + +0.1 744,130 - -0.1 744,179 + Shew_0656 0.12 +0.0 744,179 + Shew_0656 0.12 +0.0 744,187 - Shew_0656 0.12 +0.8 744,345 - Shew_0656 0.23 +1.2 744,418 + Shew_0656 0.27 +0.8 744,773 + Shew_0656 0.51 -0.2 744,922 + Shew_0656 0.60 +0.3
Or see this region's nucleotide sequence