Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0641 and Shew_0642 are separated by 1 nucleotides Shew_0642 and Shew_0643 are separated by 8 nucleotides Shew_0643 and Shew_0644 overlap by 8 nucleotides
Shew_0641: Shew_0641 - hypothetical protein (RefSeq), at 730,107 to 730,451
_0641
Shew_0642: Shew_0642 - type II secretion system protein (RefSeq), at 730,453 to 731,316
_0642
Shew_0643: Shew_0643 - type II secretion system protein (RefSeq), at 731,325 to 732,176
_0643
Shew_0644: Shew_0644 - FHA domain-containing protein (RefSeq), at 732,169 to 733,878
_0644
Position (kb) 731
732
733 Strain fitness (log2 ratio) -1
0
1 at 730.374 kb on - strand, within Shew_0641 at 730.605 kb on - strand, within Shew_0642 at 730.605 kb on - strand, within Shew_0642 at 730.839 kb on - strand, within Shew_0642 at 730.983 kb on + strand, within Shew_0642 at 731.052 kb on + strand, within Shew_0642 at 731.140 kb on - strand, within Shew_0642 at 731.187 kb on + strand, within Shew_0642 at 731.195 kb on - strand, within Shew_0642 at 731.365 kb on + strand at 731.564 kb on + strand, within Shew_0643 at 731.601 kb on + strand, within Shew_0643 at 731.703 kb on - strand, within Shew_0643 at 732.281 kb on + strand at 732.289 kb on - strand at 732.553 kb on + strand, within Shew_0644 at 732.818 kb on - strand, within Shew_0644 at 732.818 kb on - strand, within Shew_0644
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 730,374 - Shew_0641 0.77 +0.3 730,605 - Shew_0642 0.18 -0.3 730,605 - Shew_0642 0.18 -0.2 730,839 - Shew_0642 0.45 -0.0 730,983 + Shew_0642 0.61 +0.2 731,052 + Shew_0642 0.69 -0.3 731,140 - Shew_0642 0.80 -0.0 731,187 + Shew_0642 0.85 -0.3 731,195 - Shew_0642 0.86 +0.1 731,365 + -0.5 731,564 + Shew_0643 0.28 +1.1 731,601 + Shew_0643 0.32 +0.5 731,703 - Shew_0643 0.44 +0.2 732,281 + -0.2 732,289 - +0.2 732,553 + Shew_0644 0.22 -0.0 732,818 - Shew_0644 0.38 -0.0 732,818 - Shew_0644 0.38 +0.3
Or see this region's nucleotide sequence