Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0606 and Shew_0607 overlap by 4 nucleotides Shew_0607 and Shew_0608 are separated by 12 nucleotides
Shew_0606: Shew_0606 - polysulphide reductase, NrfD (RefSeq), at 684,935 to 685,876
_0606
Shew_0607: Shew_0607 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 685,873 to 686,445
_0607
Shew_0608: Shew_0608 - molybdopterin oxidoreductase (RefSeq), at 686,458 to 688,740
_0608
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1 at 684.955 kb on - strand at 685.228 kb on + strand, within Shew_0606 at 685.228 kb on + strand, within Shew_0606 at 685.236 kb on - strand, within Shew_0606 at 685.280 kb on + strand, within Shew_0606 at 685.379 kb on - strand, within Shew_0606 at 685.657 kb on + strand, within Shew_0606 at 685.675 kb on - strand, within Shew_0606 at 685.697 kb on + strand, within Shew_0606 at 685.782 kb on - strand at 685.914 kb on + strand at 685.922 kb on - strand at 685.922 kb on - strand at 685.937 kb on + strand, within Shew_0607 at 686.846 kb on - strand, within Shew_0608 at 686.898 kb on + strand, within Shew_0608 at 687.101 kb on + strand, within Shew_0608 at 687.150 kb on - strand, within Shew_0608 at 687.337 kb on + strand, within Shew_0608
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 684,955 - -1.8 685,228 + Shew_0606 0.31 +0.3 685,228 + Shew_0606 0.31 +0.1 685,236 - Shew_0606 0.32 +0.2 685,280 + Shew_0606 0.37 +0.1 685,379 - Shew_0606 0.47 +0.5 685,657 + Shew_0606 0.77 -0.2 685,675 - Shew_0606 0.79 +0.4 685,697 + Shew_0606 0.81 -0.3 685,782 - +0.3 685,914 + -0.2 685,922 - -0.6 685,922 - +0.3 685,937 + Shew_0607 0.11 -2.3 686,846 - Shew_0608 0.17 -0.1 686,898 + Shew_0608 0.19 -1.0 687,101 + Shew_0608 0.28 +0.1 687,150 - Shew_0608 0.30 -0.1 687,337 + Shew_0608 0.39 -0.3
Or see this region's nucleotide sequence