Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0602 and Shew_0603 are separated by 24 nucleotides Shew_0603 and Shew_0604 are separated by 173 nucleotides Shew_0604 and Shew_0605 are separated by 263 nucleotides Shew_0605 and Shew_0606 are separated by 84 nucleotides
Shew_0602: Shew_0602 - methyltransferase type 12 (RefSeq), at 681,505 to 682,158
_0602
Shew_0603: Shew_0603 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 682,183 to 682,602
_0603
Shew_0604: Shew_0604 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 682,776 to 684,251
_0604
Shew_0605: Shew_0605 - hypothetical protein (RefSeq), at 684,515 to 684,850
_0605
Shew_0606: Shew_0606 - polysulphide reductase, NrfD (RefSeq), at 684,935 to 685,876
_0606
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 681.793 kb on + strand, within Shew_0602 at 681.950 kb on - strand, within Shew_0602 at 681.999 kb on - strand, within Shew_0602 at 682.135 kb on - strand at 682.140 kb on - strand at 682.229 kb on + strand, within Shew_0603 at 682.309 kb on + strand, within Shew_0603 at 682.318 kb on + strand, within Shew_0603 at 682.813 kb on - strand at 682.938 kb on + strand, within Shew_0604 at 682.946 kb on - strand, within Shew_0604 at 682.990 kb on - strand, within Shew_0604 at 683.068 kb on + strand, within Shew_0604 at 683.107 kb on - strand, within Shew_0604 at 683.785 kb on + strand, within Shew_0604 at 683.813 kb on - strand, within Shew_0604 at 684.162 kb on - strand at 684.955 kb on - strand at 685.228 kb on + strand, within Shew_0606 at 685.228 kb on + strand, within Shew_0606 at 685.236 kb on - strand, within Shew_0606
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 681,793 + Shew_0602 0.44 +0.2 681,950 - Shew_0602 0.68 +0.3 681,999 - Shew_0602 0.76 -0.1 682,135 - -0.5 682,140 - +0.1 682,229 + Shew_0603 0.11 -0.4 682,309 + Shew_0603 0.30 +0.4 682,318 + Shew_0603 0.32 -0.3 682,813 - -0.2 682,938 + Shew_0604 0.11 +0.9 682,946 - Shew_0604 0.12 +0.5 682,990 - Shew_0604 0.14 +0.3 683,068 + Shew_0604 0.20 +1.4 683,107 - Shew_0604 0.22 +0.9 683,785 + Shew_0604 0.68 -0.1 683,813 - Shew_0604 0.70 +0.3 684,162 - +0.1 684,955 - -1.8 685,228 + Shew_0606 0.31 +0.3 685,228 + Shew_0606 0.31 +0.1 685,236 - Shew_0606 0.32 +0.2
Or see this region's nucleotide sequence