Strain Fitness in Shewanella loihica PV-4 around Shew_0572

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0571 and Shew_0572 overlap by 1 nucleotidesShew_0572 and sspA are separated by 108 nucleotidessspA and Shew_0574 are separated by 1 nucleotides Shew_0571: Shew_0571 - cytochrome b/b6 domain-containing protein (RefSeq), at 646,761 to 647,975 _0571 Shew_0572: Shew_0572 - cytochrome c1 (RefSeq), at 647,975 to 648,676 _0572 Shew_0573: sspA - stringent starvation protein A (RefSeq), at 648,785 to 649,414 sspA Shew_0574: Shew_0574 - ClpXP protease specificity-enhancing factor (RefSeq), at 649,416 to 649,874 _0574 Position (kb) 647 648 649Strain fitness (log2 ratio) -1 0 1at 647.008 kb on - strand, within Shew_0571at 647.259 kb on - strand, within Shew_0571at 648.665 kb on + strandat 648.673 kb on - strandat 648.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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647,008 - Shew_0571 0.20 +0.5
647,259 - Shew_0571 0.41 +0.4
648,665 + -0.1
648,673 - +0.0
648,673 - -0.8

Or see this region's nucleotide sequence