Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0517 and Shew_0518 are separated by 63 nucleotides Shew_0518 and Shew_0519 are separated by 78 nucleotides Shew_0519 and Shew_0520 are separated by 224 nucleotides
Shew_0517: Shew_0517 - putative plasmid transfer protein (RefSeq), at 586,558 to 587,754
_0517
Shew_0518: Shew_0518 - hypothetical protein (RefSeq), at 587,818 to 588,558
_0518
Shew_0519: Shew_0519 - transcriptional repressor protein MetJ (RefSeq), at 588,637 to 588,951
_0519
Shew_0520: Shew_0520 - O-succinylhomoserine (thiol)-lyase (RefSeq), at 589,176 to 590,342
_0520
Position (kb) 588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 587.810 kb on - strand at 587.875 kb on - strand at 587.944 kb on - strand, within Shew_0518 at 587.944 kb on - strand, within Shew_0518 at 587.975 kb on - strand, within Shew_0518 at 587.985 kb on + strand, within Shew_0518 at 588.520 kb on - strand at 588.541 kb on + strand at 588.809 kb on + strand, within Shew_0519 at 588.955 kb on - strand at 588.955 kb on - strand at 589.201 kb on + strand at 589.444 kb on - strand, within Shew_0520 at 589.609 kb on - strand, within Shew_0520 at 589.711 kb on - strand, within Shew_0520 at 589.794 kb on - strand, within Shew_0520 at 589.858 kb on + strand, within Shew_0520 at 589.866 kb on - strand, within Shew_0520
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 587,810 - -0.1 587,875 - +0.1 587,944 - Shew_0518 0.17 +0.1 587,944 - Shew_0518 0.17 +0.3 587,975 - Shew_0518 0.21 -0.2 587,985 + Shew_0518 0.23 +0.3 588,520 - -2.9 588,541 + +0.1 588,809 + Shew_0519 0.55 +0.8 588,955 - -2.5 588,955 - -0.4 589,201 + +0.8 589,444 - Shew_0520 0.23 +0.0 589,609 - Shew_0520 0.37 -0.4 589,711 - Shew_0520 0.46 -0.3 589,794 - Shew_0520 0.53 +0.0 589,858 + Shew_0520 0.58 -0.3 589,866 - Shew_0520 0.59 +0.0
Or see this region's nucleotide sequence