Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0462 and Shew_0463 are separated by 118 nucleotides Shew_0463 and Shew_0464 are separated by 52 nucleotides Shew_0464 and Shew_0465 are separated by 160 nucleotides Shew_0465 and Shew_0466 are separated by 196 nucleotides
Shew_0462: Shew_0462 - hypothetical protein (RefSeq), at 519,508 to 519,813
_0462
Shew_0463: Shew_0463 - hypothetical protein (RefSeq), at 519,932 to 520,315
_0463
Shew_0464: Shew_0464 - hypothetical protein (RefSeq), at 520,368 to 520,751
_0464
Shew_0465: Shew_0465 - hypothetical protein (RefSeq), at 520,912 to 521,322
_0465
Shew_0466: Shew_0466 - acriflavin resistance protein (RefSeq), at 521,519 to 524,593
_0466
Position (kb) 520
521 Strain fitness (log2 ratio) -1
0
1 at 519.454 kb on + strand at 519.640 kb on - strand, within Shew_0462 at 520.076 kb on + strand, within Shew_0463 at 520.084 kb on - strand, within Shew_0463 at 520.113 kb on + strand, within Shew_0463 at 520.248 kb on + strand, within Shew_0463 at 520.339 kb on + strand at 520.396 kb on + strand at 520.404 kb on - strand at 521.369 kb on - strand at 521.723 kb on + strand at 521.723 kb on + strand at 521.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 519,454 + +1.3 519,640 - Shew_0462 0.43 +0.3 520,076 + Shew_0463 0.38 +0.0 520,084 - Shew_0463 0.40 -1.1 520,113 + Shew_0463 0.47 +1.0 520,248 + Shew_0463 0.82 +0.3 520,339 + -1.2 520,396 + -0.3 520,404 - +0.3 521,369 - -0.1 521,723 + -0.0 521,723 + -0.3 521,723 + -0.3
Or see this region's nucleotide sequence