Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0445 and Shew_0446 are separated by 546 nucleotides Shew_0446 and Shew_0447 are separated by 77 nucleotides Shew_0447 and Shew_0448 overlap by 17 nucleotides Shew_0448 and Shew_0449 are separated by 60 nucleotides
Shew_0445: Shew_0445 - hypothetical protein (RefSeq), at 496,778 to 497,113
_0445
Shew_0446: Shew_0446 - hypothetical protein (RefSeq), at 497,660 to 497,920
_0446
Shew_0447: Shew_0447 - hypothetical protein (RefSeq), at 497,998 to 499,203
_0447
Shew_0448: Shew_0448 - periplasmic solute binding protein (RefSeq), at 499,187 to 500,098
_0448
Shew_0449: Shew_0449 - ABC-3 protein (RefSeq), at 500,159 to 500,950
_0449
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -1
0
1 at 497.051 kb on - strand, within Shew_0445 at 497.221 kb on + strand at 497.229 kb on - strand at 497.229 kb on - strand at 497.250 kb on - strand at 497.676 kb on + strand at 497.684 kb on - strand at 497.811 kb on + strand, within Shew_0446 at 498.096 kb on + strand at 498.128 kb on - strand, within Shew_0447 at 498.150 kb on + strand, within Shew_0447 at 498.158 kb on - strand, within Shew_0447 at 498.188 kb on + strand, within Shew_0447 at 498.260 kb on + strand, within Shew_0447 at 498.323 kb on - strand, within Shew_0447 at 499.067 kb on - strand, within Shew_0447 at 499.378 kb on - strand, within Shew_0448 at 499.542 kb on + strand, within Shew_0448 at 499.644 kb on - strand, within Shew_0448 at 499.700 kb on + strand, within Shew_0448 at 500.006 kb on - strand, within Shew_0448
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 497,051 - Shew_0445 0.81 +0.5 497,221 + -0.1 497,229 - +0.7 497,229 - -0.2 497,250 - +0.7 497,676 + -0.3 497,684 - +0.5 497,811 + Shew_0446 0.58 +0.4 498,096 + +0.4 498,128 - Shew_0447 0.11 +0.2 498,150 + Shew_0447 0.13 +0.2 498,158 - Shew_0447 0.13 -0.1 498,188 + Shew_0447 0.16 +0.9 498,260 + Shew_0447 0.22 +0.7 498,323 - Shew_0447 0.27 +0.1 499,067 - Shew_0447 0.89 +0.3 499,378 - Shew_0448 0.21 +0.1 499,542 + Shew_0448 0.39 -0.0 499,644 - Shew_0448 0.50 +0.5 499,700 + Shew_0448 0.56 +0.7 500,006 - Shew_0448 0.90 +0.0
Or see this region's nucleotide sequence