Strain Fitness in Shewanella loihica PV-4 around Shew_0323

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0322 and dapF are separated by 37 nucleotidesdapF and Shew_0324 are separated by 8 nucleotidesShew_0324 and Shew_0325 are separated by 7 nucleotides Shew_0322: Shew_0322 - diaminopimelate decarboxylase (RefSeq), at 368,267 to 369,511 _0322 Shew_0323: dapF - diaminopimelate epimerase (RefSeq), at 369,549 to 370,388 dapF Shew_0324: Shew_0324 - hypothetical protein (RefSeq), at 370,397 to 371,023 _0324 Shew_0325: Shew_0325 - tyrosine recombinase XerC (RefSeq), at 371,031 to 371,924 _0325 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1at 368.723 kb on + strand, within Shew_0322at 369.262 kb on - strand, within Shew_0322at 369.403 kb on - strandat 369.505 kb on + strandat 369.505 kb on + strandat 370.489 kb on + strand, within Shew_0324at 370.533 kb on + strand, within Shew_0324at 370.666 kb on + strand, within Shew_0324at 371.311 kb on + strand, within Shew_0325

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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368,723 + Shew_0322 0.37 -0.3
369,262 - Shew_0322 0.80 +1.6
369,403 - -0.9
369,505 + +0.2
369,505 + +0.1
370,489 + Shew_0324 0.15 -1.0
370,533 + Shew_0324 0.22 -0.6
370,666 + Shew_0324 0.43 +0.5
371,311 + Shew_0325 0.31 -2.0

Or see this region's nucleotide sequence