Strain Fitness in Shewanella loihica PV-4 around Shew_R0017

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0306 and Shew_R0014 are separated by 218 nucleotidesShew_R0014 and Shew_R0015 are separated by 43 nucleotidesShew_R0015 and Shew_R0016 are separated by 84 nucleotidesShew_R0016 and Shew_R0017 are separated by 52 nucleotidesShew_R0017 and Shew_0307 are separated by 132 nucleotides Shew_0306: Shew_0306 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 329,116 to 331,764 _0306 Shew_R0014: Shew_R0014 - tRNA-Arg (RefSeq), at 331,983 to 332,059 _R0014 Shew_R0015: Shew_R0015 - tRNA-His (RefSeq), at 332,103 to 332,178 _R0015 Shew_R0016: Shew_R0016 - tRNA-Pro (RefSeq), at 332,263 to 332,339 _R0016 Shew_R0017: Shew_R0017 - tRNA-Pro (RefSeq), at 332,392 to 332,468 _R0017 Shew_0307: Shew_0307 - diguanylate cyclase/phosphodiesterase (RefSeq), at 332,601 to 334,523 _0307 Position (kb) 332 333Strain fitness (log2 ratio) -2 -1 0 1at 331.407 kb on - strand, within Shew_0306at 331.484 kb on - strand, within Shew_0306at 331.986 kb on + strandat 332.850 kb on - strand, within Shew_0307at 333.130 kb on - strand, within Shew_0307at 333.311 kb on + strand, within Shew_0307at 333.319 kb on + strand, within Shew_0307at 333.409 kb on - strand, within Shew_0307at 333.447 kb on + strand, within Shew_0307

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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331,407 - Shew_0306 0.86 +0.4
331,484 - Shew_0306 0.89 +0.1
331,986 + -1.9
332,850 - Shew_0307 0.13 -0.1
333,130 - Shew_0307 0.28 -0.2
333,311 + Shew_0307 0.37 -0.1
333,319 + Shew_0307 0.37 +0.2
333,409 - Shew_0307 0.42 -0.8
333,447 + Shew_0307 0.44 +0.2

Or see this region's nucleotide sequence