Strain Fitness in Shewanella loihica PV-4 around Shew_0194

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0193 and Shew_0194 are separated by 17 nucleotidesShew_0194 and Shew_0195 overlap by 1 nucleotidesShew_0195 and Shew_0196 overlap by 4 nucleotides Shew_0193: Shew_0193 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 199,263 to 201,239 _0193 Shew_0194: Shew_0194 - periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq), at 201,257 to 201,814 _0194 Shew_0195: Shew_0195 - cytochrome C biogenesis protein (RefSeq), at 201,814 to 202,293 _0195 Shew_0196: Shew_0196 - redoxin domain-containing protein (RefSeq), at 202,290 to 202,877 _0196 Position (kb) 201 202Strain fitness (log2 ratio) -1 0 1 2at 200.631 kb on - strand, within Shew_0193at 200.692 kb on - strand, within Shew_0193at 200.882 kb on + strand, within Shew_0193at 200.939 kb on + strand, within Shew_0193at 200.959 kb on - strand, within Shew_0193at 201.178 kb on + strandat 201.399 kb on + strand, within Shew_0194at 201.790 kb on + strandat 201.790 kb on + strandat 201.790 kb on + strandat 201.790 kb on + strandat 201.959 kb on + strand, within Shew_0195at 202.258 kb on + strandat 202.483 kb on - strand, within Shew_0196at 202.526 kb on + strand, within Shew_0196at 202.696 kb on - strand, within Shew_0196

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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200,631 - Shew_0193 0.69 +2.2
200,692 - Shew_0193 0.72 +0.2
200,882 + Shew_0193 0.82 -0.7
200,939 + Shew_0193 0.85 -0.1
200,959 - Shew_0193 0.86 +0.1
201,178 + -0.8
201,399 + Shew_0194 0.25 -0.1
201,790 + +1.0
201,790 + +0.5
201,790 + +0.5
201,790 + +0.2
201,959 + Shew_0195 0.30 -0.7
202,258 + +1.0
202,483 - Shew_0196 0.33 +0.2
202,526 + Shew_0196 0.40 +0.6
202,696 - Shew_0196 0.69 +0.2

Or see this region's nucleotide sequence