Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0193 and Shew_0194 are separated by 17 nucleotides Shew_0194 and Shew_0195 overlap by 1 nucleotides Shew_0195 and Shew_0196 overlap by 4 nucleotides
Shew_0193: Shew_0193 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 199,263 to 201,239
_0193
Shew_0194: Shew_0194 - periplasmic protein thiol--disulphide oxidoreductase DsbE (RefSeq), at 201,257 to 201,814
_0194
Shew_0195: Shew_0195 - cytochrome C biogenesis protein (RefSeq), at 201,814 to 202,293
_0195
Shew_0196: Shew_0196 - redoxin domain-containing protein (RefSeq), at 202,290 to 202,877
_0196
Position (kb)
201
202 Strain fitness (log2 ratio)
-1
0
1
2 at 200.631 kb on - strand, within Shew_0193 at 200.692 kb on - strand, within Shew_0193 at 200.882 kb on + strand, within Shew_0193 at 200.939 kb on + strand, within Shew_0193 at 200.959 kb on - strand, within Shew_0193 at 201.178 kb on + strand at 201.399 kb on + strand, within Shew_0194 at 201.790 kb on + strand at 201.790 kb on + strand at 201.790 kb on + strand at 201.790 kb on + strand at 201.959 kb on + strand, within Shew_0195 at 202.258 kb on + strand at 202.483 kb on - strand, within Shew_0196 at 202.526 kb on + strand, within Shew_0196 at 202.696 kb on - strand, within Shew_0196
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 200,631 - Shew_0193 0.69 +2.2 200,692 - Shew_0193 0.72 +0.2 200,882 + Shew_0193 0.82 -0.7 200,939 + Shew_0193 0.85 -0.1 200,959 - Shew_0193 0.86 +0.1 201,178 + -0.8 201,399 + Shew_0194 0.25 -0.1 201,790 + +1.0 201,790 + +0.5 201,790 + +0.5 201,790 + +0.2 201,959 + Shew_0195 0.30 -0.7 202,258 + +1.0 202,483 - Shew_0196 0.33 +0.2 202,526 + Shew_0196 0.40 +0.6 202,696 - Shew_0196 0.69 +0.2
Or see this region's nucleotide sequence