Strain Fitness in Shewanella loihica PV-4 around Shew_0143

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0142 and Shew_0143 are separated by 63 nucleotidesShew_0143 and Shew_R0006 are separated by 235 nucleotidesShew_R0006 and Shew_R0007 are separated by 7 nucleotidesShew_R0007 and Shew_R0008 are separated by 36 nucleotidesShew_R0008 and Shew_0144 are separated by 189 nucleotides Shew_0142: Shew_0142 - biotin--protein ligase (RefSeq), at 158,231 to 159,190 _0142 Shew_0143: Shew_0143 - pantothenate kinase (RefSeq), at 159,254 to 160,204 _0143 Shew_R0006: Shew_R0006 - tRNA-Thr (RefSeq), at 160,440 to 160,515 _R0006 Shew_R0007: Shew_R0007 - tRNA-Tyr (RefSeq), at 160,523 to 160,607 _R0007 Shew_R0008: Shew_R0008 - tRNA-Gly (RefSeq), at 160,644 to 160,717 _R0008 Shew_0144: Shew_0144 - elongation factor Tu (RefSeq), at 160,907 to 162,091 _0144 Position (kb) 159 160 161Strain fitness (log2 ratio) -1 0 1at 159.223 kb on + strandat 159.223 kb on + strandat 159.223 kb on + strandat 160.242 kb on - strandat 160.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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159,223 + -0.0
159,223 + +0.2
159,223 + +0.6
160,242 - +0.8
160,247 - +1.5

Or see this region's nucleotide sequence