Strain Fitness in Shewanella loihica PV-4 around Shew_0142

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0141 and Shew_0142 overlap by 8 nucleotidesShew_0142 and Shew_0143 are separated by 63 nucleotides Shew_0141: Shew_0141 - UDP-N-acetylenolpyruvoylglucosamine reductase (RefSeq), at 157,198 to 158,238 _0141 Shew_0142: Shew_0142 - biotin--protein ligase (RefSeq), at 158,231 to 159,190 _0142 Shew_0143: Shew_0143 - pantothenate kinase (RefSeq), at 159,254 to 160,204 _0143 Position (kb) 158 159 160Strain fitness (log2 ratio) -1 0 1at 159.223 kb on + strandat 159.223 kb on + strandat 159.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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159,223 + -0.0
159,223 + +0.2
159,223 + +0.6

Or see this region's nucleotide sequence