Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0139 and Shew_0140 are separated by 68 nucleotides Shew_0140 and Shew_R0001 are separated by 631 nucleotides
Shew_0139: Shew_0139 - glutamate racemase (RefSeq), at 149,128 to 149,928
_0139
Shew_0140: Shew_0140 - RNP-1-like RNA-binding protein (RefSeq), at 149,997 to 150,455
_0140
Shew_R0001: Shew_R0001 - 16S ribosomal RNA (RefSeq), at 151,087 to 152,641
_R0001
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 149.887 kb on + strand at 149.887 kb on + strand at 150.053 kb on + strand, within Shew_0140 at 150.053 kb on + strand, within Shew_0140 at 150.061 kb on - strand, within Shew_0140 at 150.135 kb on + strand, within Shew_0140 at 150.201 kb on - strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.238 kb on + strand, within Shew_0140 at 150.246 kb on - strand, within Shew_0140 at 150.278 kb on + strand, within Shew_0140 at 150.280 kb on + strand, within Shew_0140 at 150.288 kb on - strand, within Shew_0140 at 150.318 kb on - strand, within Shew_0140 at 150.385 kb on + strand, within Shew_0140 at 150.393 kb on - strand, within Shew_0140 at 150.393 kb on - strand, within Shew_0140
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 149,887 + -0.1 149,887 + +0.1 150,053 + Shew_0140 0.12 -0.8 150,053 + Shew_0140 0.12 -0.7 150,061 - Shew_0140 0.14 -0.4 150,135 + Shew_0140 0.30 -0.6 150,201 - Shew_0140 0.44 -0.7 150,238 + Shew_0140 0.53 -0.5 150,238 + Shew_0140 0.53 -1.9 150,238 + Shew_0140 0.53 -0.3 150,238 + Shew_0140 0.53 -1.0 150,238 + Shew_0140 0.53 -1.5 150,238 + Shew_0140 0.53 -0.5 150,246 - Shew_0140 0.54 -0.5 150,278 + Shew_0140 0.61 +0.1 150,280 + Shew_0140 0.62 +0.4 150,288 - Shew_0140 0.63 -0.2 150,318 - Shew_0140 0.70 -1.3 150,385 + Shew_0140 0.85 -0.5 150,393 - Shew_0140 0.86 -1.1 150,393 - Shew_0140 0.86 -0.2
Or see this region's nucleotide sequence