Experiment: LB_DAP agar plate, outgrowth in LB_gent
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000032 and ABIE53_000033 are separated by 260 nucleotides ABIE53_000033 and ABIE53_000034 are separated by 146 nucleotides
ABIE53_000032: ABIE53_000032 - hypothetical protein, at 40,897 to 41,574
_000032
ABIE53_000033: ABIE53_000033 - hypothetical protein, at 41,835 to 42,167
_000033
ABIE53_000034: ABIE53_000034 - glucosamine--fructose-6-phosphate aminotransferase (isomerizing), at 42,314 to 44,131
_000034
Position (kb) 41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 40.840 kb on - strand at 40.898 kb on + strand at 40.898 kb on + strand at 40.899 kb on - strand at 40.899 kb on - strand at 40.954 kb on - strand at 40.954 kb on - strand at 40.954 kb on - strand at 40.954 kb on - strand at 40.965 kb on + strand, within ABIE53_000032 at 40.966 kb on - strand, within ABIE53_000032 at 40.968 kb on + strand, within ABIE53_000032 at 40.968 kb on + strand, within ABIE53_000032 at 40.968 kb on + strand, within ABIE53_000032 at 40.968 kb on + strand, within ABIE53_000032 at 40.968 kb on + strand, within ABIE53_000032 at 40.968 kb on + strand, within ABIE53_000032 at 40.969 kb on - strand, within ABIE53_000032 at 40.969 kb on - strand, within ABIE53_000032 at 40.969 kb on - strand, within ABIE53_000032 at 41.007 kb on + strand, within ABIE53_000032 at 41.007 kb on + strand, within ABIE53_000032 at 41.007 kb on + strand, within ABIE53_000032 at 41.007 kb on + strand, within ABIE53_000032 at 41.008 kb on - strand, within ABIE53_000032 at 41.008 kb on - strand, within ABIE53_000032 at 41.150 kb on + strand, within ABIE53_000032 at 41.151 kb on - strand, within ABIE53_000032 at 41.151 kb on - strand, within ABIE53_000032 at 41.151 kb on - strand, within ABIE53_000032 at 41.151 kb on - strand, within ABIE53_000032 at 41.151 kb on - strand, within ABIE53_000032 at 41.168 kb on + strand, within ABIE53_000032 at 41.168 kb on + strand, within ABIE53_000032 at 41.168 kb on + strand, within ABIE53_000032 at 41.168 kb on + strand, within ABIE53_000032 at 41.169 kb on - strand, within ABIE53_000032 at 41.169 kb on - strand, within ABIE53_000032 at 41.169 kb on - strand, within ABIE53_000032 at 41.169 kb on - strand, within ABIE53_000032 at 41.213 kb on + strand, within ABIE53_000032 at 41.213 kb on + strand, within ABIE53_000032 at 41.213 kb on + strand, within ABIE53_000032 at 41.214 kb on - strand, within ABIE53_000032 at 41.214 kb on - strand, within ABIE53_000032 at 41.214 kb on - strand, within ABIE53_000032 at 41.214 kb on - strand, within ABIE53_000032 at 41.214 kb on - strand, within ABIE53_000032 at 41.214 kb on - strand, within ABIE53_000032 at 41.219 kb on + strand, within ABIE53_000032 at 41.219 kb on + strand, within ABIE53_000032 at 41.376 kb on + strand, within ABIE53_000032 at 41.376 kb on + strand, within ABIE53_000032 at 41.376 kb on + strand, within ABIE53_000032 at 41.376 kb on + strand, within ABIE53_000032 at 41.377 kb on - strand, within ABIE53_000032 at 41.377 kb on - strand, within ABIE53_000032 at 41.408 kb on + strand, within ABIE53_000032 at 41.408 kb on + strand, within ABIE53_000032 at 41.408 kb on + strand, within ABIE53_000032 at 41.408 kb on + strand, within ABIE53_000032 at 41.408 kb on + strand, within ABIE53_000032 at 41.409 kb on - strand, within ABIE53_000032 at 41.409 kb on - strand, within ABIE53_000032 at 41.409 kb on - strand, within ABIE53_000032 at 41.409 kb on - strand, within ABIE53_000032 at 41.409 kb on - strand, within ABIE53_000032 at 41.440 kb on + strand, within ABIE53_000032 at 41.440 kb on + strand, within ABIE53_000032 at 41.486 kb on + strand, within ABIE53_000032 at 41.486 kb on + strand, within ABIE53_000032 at 41.486 kb on + strand, within ABIE53_000032 at 41.486 kb on + strand, within ABIE53_000032 at 41.487 kb on - strand, within ABIE53_000032 at 41.487 kb on - strand, within ABIE53_000032 at 41.487 kb on - strand, within ABIE53_000032 at 41.487 kb on - strand, within ABIE53_000032 at 41.563 kb on + strand at 41.563 kb on + strand at 41.564 kb on - strand at 41.564 kb on - strand at 41.604 kb on + strand at 41.604 kb on + strand at 41.604 kb on + strand at 41.604 kb on + strand at 41.604 kb on + strand at 41.604 kb on + strand at 41.604 kb on + strand at 41.605 kb on - strand at 41.605 kb on - strand at 41.605 kb on - strand at 41.605 kb on - strand at 41.605 kb on - strand at 41.606 kb on + strand at 41.607 kb on - strand at 41.607 kb on - strand at 41.739 kb on + strand at 41.739 kb on + strand at 41.739 kb on + strand at 41.739 kb on + strand at 41.739 kb on + strand at 41.740 kb on - strand at 41.740 kb on - strand at 41.740 kb on - strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.780 kb on + strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.781 kb on - strand at 41.799 kb on + strand at 41.799 kb on + strand at 41.800 kb on - strand at 41.800 kb on - strand at 41.804 kb on + strand at 41.804 kb on + strand at 41.804 kb on + strand at 41.805 kb on - strand at 41.805 kb on - strand at 41.805 kb on - strand at 41.805 kb on - strand at 41.805 kb on - strand at 41.883 kb on + strand, within ABIE53_000033 at 41.883 kb on + strand, within ABIE53_000033 at 41.883 kb on + strand, within ABIE53_000033 at 41.883 kb on + strand, within ABIE53_000033 at 41.883 kb on + strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.884 kb on - strand, within ABIE53_000033 at 41.906 kb on + strand, within ABIE53_000033 at 41.906 kb on + strand, within ABIE53_000033 at 41.906 kb on + strand, within ABIE53_000033 at 41.906 kb on + strand, within ABIE53_000033 at 41.907 kb on - strand, within ABIE53_000033 at 41.907 kb on - strand, within ABIE53_000033 at 41.907 kb on - strand, within ABIE53_000033 at 41.907 kb on - strand, within ABIE53_000033 at 41.924 kb on + strand, within ABIE53_000033 at 41.924 kb on + strand, within ABIE53_000033 at 41.925 kb on - strand, within ABIE53_000033 at 41.925 kb on - strand, within ABIE53_000033 at 41.925 kb on - strand, within ABIE53_000033 at 41.925 kb on - strand, within ABIE53_000033 at 41.925 kb on - strand, within ABIE53_000033 at 41.925 kb on - strand, within ABIE53_000033 at 41.965 kb on + strand, within ABIE53_000033 at 41.965 kb on + strand, within ABIE53_000033 at 41.965 kb on + strand, within ABIE53_000033 at 41.965 kb on + strand, within ABIE53_000033 at 41.966 kb on - strand, within ABIE53_000033 at 41.966 kb on - strand, within ABIE53_000033 at 41.966 kb on - strand, within ABIE53_000033 at 41.991 kb on + strand, within ABIE53_000033 at 42.120 kb on + strand, within ABIE53_000033 at 42.120 kb on + strand, within ABIE53_000033 at 42.120 kb on + strand, within ABIE53_000033 at 42.121 kb on - strand, within ABIE53_000033 at 42.174 kb on + strand at 42.174 kb on + strand at 42.174 kb on + strand at 42.174 kb on + strand at 42.175 kb on - strand at 42.175 kb on - strand at 42.225 kb on - strand at 42.225 kb on - strand at 42.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB_gent remove 40,840 - -0.7 40,898 + +0.2 40,898 + -0.9 40,899 - -1.2 40,899 - -0.7 40,954 - +2.2 40,954 - +0.9 40,954 - -1.0 40,954 - +0.6 40,965 + ABIE53_000032 0.10 +0.2 40,966 - ABIE53_000032 0.10 +0.2 40,968 + ABIE53_000032 0.10 +0.2 40,968 + ABIE53_000032 0.10 +1.0 40,968 + ABIE53_000032 0.10 +0.9 40,968 + ABIE53_000032 0.10 -0.3 40,968 + ABIE53_000032 0.10 +0.2 40,968 + ABIE53_000032 0.10 +0.7 40,969 - ABIE53_000032 0.11 +2.2 40,969 - ABIE53_000032 0.11 -1.0 40,969 - ABIE53_000032 0.11 -1.4 41,007 + ABIE53_000032 0.16 -0.3 41,007 + ABIE53_000032 0.16 +0.8 41,007 + ABIE53_000032 0.16 -0.8 41,007 + ABIE53_000032 0.16 +0.9 41,008 - ABIE53_000032 0.16 -0.4 41,008 - ABIE53_000032 0.16 -1.0 41,150 + ABIE53_000032 0.37 -0.9 41,151 - ABIE53_000032 0.37 -0.9 41,151 - ABIE53_000032 0.37 -0.7 41,151 - ABIE53_000032 0.37 -1.5 41,151 - ABIE53_000032 0.37 -1.3 41,151 - ABIE53_000032 0.37 -1.1 41,168 + ABIE53_000032 0.40 -1.4 41,168 + ABIE53_000032 0.40 +0.6 41,168 + ABIE53_000032 0.40 -0.5 41,168 + ABIE53_000032 0.40 +0.0 41,169 - ABIE53_000032 0.40 +0.0 41,169 - ABIE53_000032 0.40 +0.1 41,169 - ABIE53_000032 0.40 -0.2 41,169 - ABIE53_000032 0.40 +0.3 41,213 + ABIE53_000032 0.47 -1.5 41,213 + ABIE53_000032 0.47 -0.8 41,213 + ABIE53_000032 0.47 +0.6 41,214 - ABIE53_000032 0.47 -0.1 41,214 - ABIE53_000032 0.47 -1.4 41,214 - ABIE53_000032 0.47 -0.3 41,214 - ABIE53_000032 0.47 -0.4 41,214 - ABIE53_000032 0.47 +0.2 41,214 - ABIE53_000032 0.47 -0.3 41,219 + ABIE53_000032 0.47 -1.0 41,219 + ABIE53_000032 0.47 -0.2 41,376 + ABIE53_000032 0.71 -0.3 41,376 + ABIE53_000032 0.71 -0.2 41,376 + ABIE53_000032 0.71 +3.2 41,376 + ABIE53_000032 0.71 -0.5 41,377 - ABIE53_000032 0.71 +0.5 41,377 - ABIE53_000032 0.71 +0.4 41,408 + ABIE53_000032 0.75 -2.0 41,408 + ABIE53_000032 0.75 -0.1 41,408 + ABIE53_000032 0.75 +3.2 41,408 + ABIE53_000032 0.75 -0.6 41,408 + ABIE53_000032 0.75 +0.3 41,409 - ABIE53_000032 0.76 +0.0 41,409 - ABIE53_000032 0.76 +0.7 41,409 - ABIE53_000032 0.76 -0.2 41,409 - ABIE53_000032 0.76 +1.2 41,409 - ABIE53_000032 0.76 +0.2 41,440 + ABIE53_000032 0.80 -1.1 41,440 + ABIE53_000032 0.80 +0.2 41,486 + ABIE53_000032 0.87 +0.8 41,486 + ABIE53_000032 0.87 +0.5 41,486 + ABIE53_000032 0.87 +0.2 41,486 + ABIE53_000032 0.87 -1.1 41,487 - ABIE53_000032 0.87 +0.2 41,487 - ABIE53_000032 0.87 -0.9 41,487 - ABIE53_000032 0.87 -0.7 41,487 - ABIE53_000032 0.87 +0.4 41,563 + +0.7 41,563 + -0.5 41,564 - -1.5 41,564 - +2.0 41,604 + +0.6 41,604 + +0.2 41,604 + -0.1 41,604 + +0.3 41,604 + +1.8 41,604 + +0.0 41,604 + +0.1 41,605 - +0.6 41,605 - +2.8 41,605 - +1.5 41,605 - -3.8 41,605 - +0.4 41,606 + +0.2 41,607 - +2.2 41,607 - +1.3 41,739 + -0.3 41,739 + -0.3 41,739 + +0.3 41,739 + -2.0 41,739 + +0.3 41,740 - +0.6 41,740 - +0.7 41,740 - -0.5 41,780 + -1.6 41,780 + +1.7 41,780 + -1.9 41,780 + -1.7 41,780 + +0.4 41,780 + +2.2 41,780 + -1.7 41,780 + +2.2 41,780 + +1.4 41,780 + +0.2 41,780 + +0.5 41,780 + +1.5 41,780 + +1.8 41,781 - +2.2 41,781 - +0.0 41,781 - +0.4 41,781 - -0.1 41,781 - +0.1 41,781 - +2.2 41,781 - +0.2 41,781 - +0.1 41,781 - -0.6 41,781 - -0.4 41,781 - -0.1 41,781 - +0.0 41,781 - +0.6 41,799 + +1.6 41,799 + -0.6 41,800 - +3.2 41,800 - -0.4 41,804 + +0.2 41,804 + +1.1 41,804 + -2.2 41,805 - -1.1 41,805 - +0.1 41,805 - -1.8 41,805 - +0.3 41,805 - -0.7 41,883 + ABIE53_000033 0.14 +1.0 41,883 + ABIE53_000033 0.14 -1.2 41,883 + ABIE53_000033 0.14 -0.1 41,883 + ABIE53_000033 0.14 -0.0 41,883 + ABIE53_000033 0.14 +0.0 41,884 - ABIE53_000033 0.15 +0.5 41,884 - ABIE53_000033 0.15 +1.2 41,884 - ABIE53_000033 0.15 +0.6 41,884 - ABIE53_000033 0.15 -2.1 41,884 - ABIE53_000033 0.15 +1.4 41,884 - ABIE53_000033 0.15 -0.6 41,884 - ABIE53_000033 0.15 +0.3 41,884 - ABIE53_000033 0.15 +0.3 41,884 - ABIE53_000033 0.15 -0.1 41,906 + ABIE53_000033 0.21 +0.7 41,906 + ABIE53_000033 0.21 -1.2 41,906 + ABIE53_000033 0.21 -1.2 41,906 + ABIE53_000033 0.21 +1.5 41,907 - ABIE53_000033 0.22 -0.2 41,907 - ABIE53_000033 0.22 +0.1 41,907 - ABIE53_000033 0.22 -1.4 41,907 - ABIE53_000033 0.22 -0.2 41,924 + ABIE53_000033 0.27 -1.1 41,924 + ABIE53_000033 0.27 +0.6 41,925 - ABIE53_000033 0.27 -0.2 41,925 - ABIE53_000033 0.27 +0.8 41,925 - ABIE53_000033 0.27 +0.6 41,925 - ABIE53_000033 0.27 +0.1 41,925 - ABIE53_000033 0.27 -0.3 41,925 - ABIE53_000033 0.27 +1.3 41,965 + ABIE53_000033 0.39 -0.4 41,965 + ABIE53_000033 0.39 -0.1 41,965 + ABIE53_000033 0.39 -1.0 41,965 + ABIE53_000033 0.39 -2.3 41,966 - ABIE53_000033 0.39 -0.6 41,966 - ABIE53_000033 0.39 -0.0 41,966 - ABIE53_000033 0.39 -0.2 41,991 + ABIE53_000033 0.47 -2.4 42,120 + ABIE53_000033 0.86 +0.1 42,120 + ABIE53_000033 0.86 -1.2 42,120 + ABIE53_000033 0.86 -0.2 42,121 - ABIE53_000033 0.86 -0.4 42,174 + -0.5 42,174 + -0.8 42,174 + -1.2 42,174 + -0.2 42,175 - +0.0 42,175 - +2.8 42,225 - -0.2 42,225 - +2.0 42,241 - -0.9
Or see this region's nucleotide sequence