Experiment: LB_DAP agar plate, outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004024 and ABIE53_004025 are separated by 399 nucleotides ABIE53_004025 and ABIE53_004026 overlap by 4 nucleotides
ABIE53_004024: ABIE53_004024 - hypothetical protein, at 182,912 to 183,757
_004024
ABIE53_004025: ABIE53_004025 - GntR family transcriptional regulator of vanillate catabolism, at 184,157 to 184,858
_004025
ABIE53_004026: ABIE53_004026 - LysR family transcriptional regulator of gallate degradation, at 184,855 to 186,201
_004026
Position (kb) 184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 183.228 kb on + strand, within ABIE53_004024 at 183.591 kb on + strand, within ABIE53_004024 at 183.591 kb on + strand, within ABIE53_004024 at 183.591 kb on + strand, within ABIE53_004024 at 183.592 kb on - strand, within ABIE53_004024 at 183.592 kb on - strand, within ABIE53_004024 at 183.699 kb on + strand at 183.700 kb on - strand at 183.774 kb on + strand at 183.808 kb on + strand at 183.808 kb on + strand at 183.810 kb on + strand at 183.810 kb on + strand at 183.810 kb on + strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.889 kb on + strand at 184.012 kb on + strand at 184.012 kb on + strand at 184.013 kb on - strand at 184.125 kb on + strand at 184.125 kb on + strand at 184.127 kb on + strand at 184.127 kb on + strand at 184.128 kb on - strand at 184.128 kb on - strand at 184.148 kb on + strand at 184.148 kb on + strand at 184.350 kb on - strand, within ABIE53_004025 at 184.521 kb on + strand, within ABIE53_004025 at 184.522 kb on - strand, within ABIE53_004025 at 184.544 kb on + strand, within ABIE53_004025 at 184.545 kb on - strand, within ABIE53_004025 at 184.706 kb on + strand, within ABIE53_004025 at 184.706 kb on + strand, within ABIE53_004025 at 184.789 kb on + strand at 184.789 kb on + strand at 184.789 kb on + strand at 184.790 kb on - strand at 184.790 kb on - strand at 184.790 kb on - strand at 184.917 kb on + strand at 184.917 kb on + strand at 184.918 kb on - strand at 184.918 kb on - strand at 184.918 kb on - strand at 184.918 kb on - strand at 184.918 kb on - strand at 184.944 kb on + strand at 184.985 kb on + strand at 184.985 kb on + strand at 184.985 kb on + strand at 184.986 kb on - strand at 185.065 kb on - strand, within ABIE53_004026 at 185.076 kb on - strand, within ABIE53_004026 at 185.266 kb on + strand, within ABIE53_004026 at 185.267 kb on - strand, within ABIE53_004026 at 185.267 kb on - strand, within ABIE53_004026 at 185.370 kb on + strand, within ABIE53_004026 at 185.370 kb on + strand, within ABIE53_004026 at 185.418 kb on + strand, within ABIE53_004026 at 185.419 kb on - strand, within ABIE53_004026 at 185.419 kb on - strand, within ABIE53_004026 at 185.419 kb on - strand, within ABIE53_004026 at 185.504 kb on + strand, within ABIE53_004026 at 185.514 kb on + strand, within ABIE53_004026 at 185.515 kb on - strand, within ABIE53_004026 at 185.536 kb on - strand, within ABIE53_004026 at 185.536 kb on - strand, within ABIE53_004026 at 185.656 kb on + strand, within ABIE53_004026
Per-strain Table
Position Strand Gene LocusTag Fraction LB_DAP agar plate, outgrowth in LB remove 183,228 + ABIE53_004024 0.37 +0.0 183,591 + ABIE53_004024 0.80 -0.2 183,591 + ABIE53_004024 0.80 -0.5 183,591 + ABIE53_004024 0.80 -3.6 183,592 - ABIE53_004024 0.80 -0.5 183,592 - ABIE53_004024 0.80 -1.3 183,699 + +0.0 183,700 - -1.3 183,774 + +0.7 183,808 + +0.3 183,808 + +1.7 183,810 + +0.5 183,810 + -0.5 183,810 + +0.1 183,811 - +3.7 183,811 - +0.3 183,889 + +0.8 184,012 + -0.6 184,012 + -2.8 184,013 - -0.1 184,125 + +1.5 184,125 + +4.3 184,127 + +0.6 184,127 + -0.9 184,128 - -1.6 184,128 - +1.5 184,148 + +1.4 184,148 + -0.5 184,350 - ABIE53_004025 0.27 -1.9 184,521 + ABIE53_004025 0.52 +1.3 184,522 - ABIE53_004025 0.52 -1.0 184,544 + ABIE53_004025 0.55 -1.6 184,545 - ABIE53_004025 0.55 -1.1 184,706 + ABIE53_004025 0.78 -2.1 184,706 + ABIE53_004025 0.78 -1.7 184,789 + -0.7 184,789 + +0.4 184,789 + -0.4 184,790 - +0.1 184,790 - -2.3 184,790 - -2.0 184,917 + +0.4 184,917 + -0.0 184,918 - +0.5 184,918 - -1.6 184,918 - +0.0 184,918 - -2.8 184,918 - +4.5 184,944 + -0.9 184,985 + -2.1 184,985 + -0.3 184,985 + -2.0 184,986 - +1.0 185,065 - ABIE53_004026 0.16 -1.8 185,076 - ABIE53_004026 0.16 -1.9 185,266 + ABIE53_004026 0.31 +0.1 185,267 - ABIE53_004026 0.31 +0.1 185,267 - ABIE53_004026 0.31 -1.4 185,370 + ABIE53_004026 0.38 -0.7 185,370 + ABIE53_004026 0.38 -0.9 185,418 + ABIE53_004026 0.42 -0.5 185,419 - ABIE53_004026 0.42 +1.7 185,419 - ABIE53_004026 0.42 -2.7 185,419 - ABIE53_004026 0.42 -0.2 185,504 + ABIE53_004026 0.48 +0.3 185,514 + ABIE53_004026 0.49 +0.3 185,515 - ABIE53_004026 0.49 -0.4 185,536 - ABIE53_004026 0.51 -0.6 185,536 - ABIE53_004026 0.51 +1.1 185,656 + ABIE53_004026 0.59 -1.9
Or see this region's nucleotide sequence