Experiment: cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13250 and BBR_RS13255 are separated by 234 nucleotides BBR_RS13255 and BBR_RS13260 are separated by 102 nucleotides BBR_RS13260 and BBR_RS13265 are separated by 1 nucleotides BBR_RS13265 and BBR_RS20750 are separated by 137 nucleotides BBR_RS20750 and BBR_RS20755 are separated by 1 nucleotides
BBR_RS13250: BBR_RS13250 - alpha-glucosidase, at 746,467 to 748,281
_RS13250
BBR_RS13255: BBR_RS13255 - hypothetical protein, at 748,516 to 748,692
_RS13255
BBR_RS13260: BBR_RS13260 - ABC transporter substrate-binding protein, at 748,795 to 750,414
_RS13260
BBR_RS13265: BBR_RS13265 - peptide methionine sulfoxide reductase msrA/msrB, at 750,416 to 750,907
_RS13265
BBR_RS20750: BBR_RS20750 - GntR family transcriptional regulator, at 751,045 to 751,170
_RS20750
BBR_RS20755: BBR_RS20755 - IS3 family transposase, at 751,172 to 751,470
_RS20755
Position (kb) 748
749
750
751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 747.825 kb on + strand, within BBR_RS13250 at 747.828 kb on - strand, within BBR_RS13250 at 747.845 kb on + strand, within BBR_RS13250 at 747.877 kb on + strand, within BBR_RS13250 at 747.880 kb on - strand, within BBR_RS13250 at 747.885 kb on - strand, within BBR_RS13250 at 747.896 kb on - strand, within BBR_RS13250 at 747.947 kb on - strand, within BBR_RS13250 at 747.966 kb on + strand, within BBR_RS13250 at 747.974 kb on + strand, within BBR_RS13250 at 747.974 kb on - strand, within BBR_RS13250 at 747.982 kb on - strand, within BBR_RS13250 at 747.996 kb on + strand, within BBR_RS13250 at 748.008 kb on + strand, within BBR_RS13250 at 748.016 kb on - strand, within BBR_RS13250 at 748.022 kb on - strand, within BBR_RS13250 at 748.058 kb on + strand, within BBR_RS13250 at 748.083 kb on + strand, within BBR_RS13250 at 748.086 kb on - strand, within BBR_RS13250 at 748.086 kb on - strand, within BBR_RS13250 at 748.091 kb on - strand, within BBR_RS13250 at 748.148 kb on - strand at 748.157 kb on - strand at 748.213 kb on - strand at 748.218 kb on + strand at 748.236 kb on + strand at 748.239 kb on - strand at 748.243 kb on - strand at 748.244 kb on + strand at 748.244 kb on - strand at 748.308 kb on + strand at 748.308 kb on + strand at 748.414 kb on + strand at 748.415 kb on + strand at 748.428 kb on - strand at 748.428 kb on - strand at 748.471 kb on + strand at 748.471 kb on + strand at 748.471 kb on + strand at 748.471 kb on + strand at 748.479 kb on - strand at 748.479 kb on - strand at 748.479 kb on - strand at 748.479 kb on - strand at 748.479 kb on - strand at 748.491 kb on + strand at 748.499 kb on - strand at 748.499 kb on - strand at 748.552 kb on - strand, within BBR_RS13255 at 748.573 kb on + strand, within BBR_RS13255 at 748.588 kb on - strand, within BBR_RS13255 at 748.618 kb on + strand, within BBR_RS13255 at 748.618 kb on + strand, within BBR_RS13255 at 748.618 kb on - strand, within BBR_RS13255 at 748.642 kb on - strand, within BBR_RS13255 at 748.654 kb on + strand, within BBR_RS13255 at 748.657 kb on - strand, within BBR_RS13255 at 748.662 kb on - strand, within BBR_RS13255 at 748.671 kb on - strand, within BBR_RS13255 at 748.834 kb on + strand at 748.842 kb on + strand at 748.897 kb on + strand at 748.946 kb on - strand at 748.953 kb on + strand at 748.981 kb on + strand, within BBR_RS13260 at 748.996 kb on + strand, within BBR_RS13260 at 749.013 kb on - strand, within BBR_RS13260 at 749.023 kb on - strand, within BBR_RS13260 at 749.023 kb on - strand, within BBR_RS13260 at 749.058 kb on - strand, within BBR_RS13260 at 749.078 kb on + strand, within BBR_RS13260 at 749.097 kb on + strand, within BBR_RS13260 at 749.115 kb on + strand, within BBR_RS13260 at 749.146 kb on - strand, within BBR_RS13260 at 749.146 kb on - strand, within BBR_RS13260 at 749.158 kb on + strand, within BBR_RS13260 at 749.158 kb on + strand, within BBR_RS13260 at 749.165 kb on - strand, within BBR_RS13260 at 749.181 kb on + strand, within BBR_RS13260 at 749.201 kb on - strand, within BBR_RS13260 at 749.244 kb on - strand, within BBR_RS13260 at 749.244 kb on - strand, within BBR_RS13260 at 749.276 kb on - strand, within BBR_RS13260 at 749.276 kb on - strand, within BBR_RS13260 at 749.320 kb on + strand, within BBR_RS13260 at 749.338 kb on - strand, within BBR_RS13260 at 749.421 kb on + strand, within BBR_RS13260 at 749.429 kb on + strand, within BBR_RS13260 at 749.441 kb on - strand, within BBR_RS13260 at 749.461 kb on - strand, within BBR_RS13260 at 749.514 kb on + strand, within BBR_RS13260 at 749.522 kb on - strand, within BBR_RS13260 at 749.536 kb on - strand, within BBR_RS13260 at 749.545 kb on + strand, within BBR_RS13260 at 749.545 kb on + strand, within BBR_RS13260 at 749.545 kb on + strand, within BBR_RS13260 at 749.545 kb on + strand, within BBR_RS13260 at 749.553 kb on - strand, within BBR_RS13260 at 749.555 kb on + strand, within BBR_RS13260 at 749.563 kb on - strand, within BBR_RS13260 at 749.569 kb on + strand, within BBR_RS13260 at 749.624 kb on - strand, within BBR_RS13260 at 749.634 kb on + strand, within BBR_RS13260 at 749.669 kb on + strand, within BBR_RS13260 at 749.677 kb on - strand, within BBR_RS13260 at 749.719 kb on + strand, within BBR_RS13260 at 749.727 kb on - strand, within BBR_RS13260 at 749.787 kb on + strand, within BBR_RS13260 at 749.787 kb on + strand, within BBR_RS13260 at 749.795 kb on - strand, within BBR_RS13260 at 749.802 kb on + strand, within BBR_RS13260 at 749.867 kb on - strand, within BBR_RS13260 at 749.894 kb on + strand, within BBR_RS13260 at 749.934 kb on + strand, within BBR_RS13260 at 750.025 kb on - strand, within BBR_RS13260 at 750.042 kb on + strand, within BBR_RS13260 at 750.096 kb on - strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.098 kb on + strand, within BBR_RS13260 at 750.106 kb on - strand, within BBR_RS13260 at 750.106 kb on - strand, within BBR_RS13260 at 750.107 kb on + strand, within BBR_RS13260 at 750.108 kb on + strand, within BBR_RS13260 at 750.126 kb on - strand, within BBR_RS13260 at 750.159 kb on + strand, within BBR_RS13260 at 750.238 kb on + strand, within BBR_RS13260 at 750.240 kb on + strand, within BBR_RS13260 at 750.374 kb on + strand at 750.374 kb on + strand at 750.375 kb on - strand at 750.381 kb on - strand at 750.381 kb on - strand at 750.385 kb on + strand at 750.393 kb on - strand at 750.395 kb on + strand at 750.413 kb on + strand at 750.445 kb on + strand at 750.463 kb on - strand at 750.463 kb on - strand at 750.463 kb on - strand at 750.465 kb on + strand at 750.475 kb on + strand, within BBR_RS13265 at 750.514 kb on + strand, within BBR_RS13265 at 750.522 kb on - strand, within BBR_RS13265 at 750.529 kb on + strand, within BBR_RS13265 at 750.529 kb on + strand, within BBR_RS13265 at 750.531 kb on + strand, within BBR_RS13265 at 750.534 kb on + strand, within BBR_RS13265 at 750.534 kb on + strand, within BBR_RS13265 at 750.544 kb on + strand, within BBR_RS13265 at 750.559 kb on + strand, within BBR_RS13265 at 750.559 kb on + strand, within BBR_RS13265 at 750.619 kb on - strand, within BBR_RS13265 at 750.652 kb on + strand, within BBR_RS13265 at 750.678 kb on + strand, within BBR_RS13265 at 750.678 kb on + strand, within BBR_RS13265 at 750.705 kb on - strand, within BBR_RS13265 at 750.713 kb on + strand, within BBR_RS13265 at 750.713 kb on + strand, within BBR_RS13265 at 750.713 kb on + strand, within BBR_RS13265 at 750.713 kb on + strand, within BBR_RS13265 at 750.715 kb on + strand, within BBR_RS13265 at 750.716 kb on - strand, within BBR_RS13265 at 750.721 kb on - strand, within BBR_RS13265 at 750.786 kb on + strand, within BBR_RS13265 at 750.794 kb on - strand, within BBR_RS13265 at 750.814 kb on + strand, within BBR_RS13265 at 750.821 kb on + strand, within BBR_RS13265 at 750.837 kb on - strand, within BBR_RS13265 at 750.840 kb on - strand, within BBR_RS13265 at 750.847 kb on - strand, within BBR_RS13265 at 750.847 kb on - strand, within BBR_RS13265 at 750.854 kb on + strand, within BBR_RS13265 at 750.854 kb on + strand, within BBR_RS13265 at 750.902 kb on + strand at 750.902 kb on + strand at 750.910 kb on - strand at 750.910 kb on - strand at 750.921 kb on - strand at 750.931 kb on - strand at 750.973 kb on + strand at 750.981 kb on - strand at 750.981 kb on - strand at 750.981 kb on - strand at 750.982 kb on - strand at 751.088 kb on + strand, within BBR_RS20750 at 751.108 kb on - strand, within BBR_RS20750 at 751.108 kb on - strand, within BBR_RS20750 at 751.160 kb on + strand at 751.160 kb on + strand at 751.162 kb on + strand at 751.162 kb on + strand at 751.162 kb on + strand at 751.162 kb on + strand at 751.170 kb on - strand at 751.212 kb on - strand, within BBR_RS20755 at 751.217 kb on + strand, within BBR_RS20755 at 751.217 kb on + strand, within BBR_RS20755 at 751.225 kb on - strand, within BBR_RS20755 at 751.225 kb on - strand, within BBR_RS20755 at 751.230 kb on + strand, within BBR_RS20755 at 751.230 kb on + strand, within BBR_RS20755 at 751.238 kb on - strand, within BBR_RS20755 at 751.293 kb on - strand, within BBR_RS20755 at 751.345 kb on - strand, within BBR_RS20755 at 751.365 kb on + strand, within BBR_RS20755 at 751.373 kb on - strand, within BBR_RS20755 at 751.413 kb on + strand, within BBR_RS20755 at 751.413 kb on - strand, within BBR_RS20755 at 751.413 kb on - strand, within BBR_RS20755
Per-strain Table
Position Strand Gene LocusTag Fraction cage2; mouse2; day2; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482 remove 747,825 + BBR_RS13250 0.75 -1.0 747,828 - BBR_RS13250 0.75 +0.3 747,845 + BBR_RS13250 0.76 +0.3 747,877 + BBR_RS13250 0.78 +0.3 747,880 - BBR_RS13250 0.78 +0.3 747,885 - BBR_RS13250 0.78 +0.4 747,896 - BBR_RS13250 0.79 -0.3 747,947 - BBR_RS13250 0.82 +1.5 747,966 + BBR_RS13250 0.83 +2.7 747,974 + BBR_RS13250 0.83 -1.0 747,974 - BBR_RS13250 0.83 +0.1 747,982 - BBR_RS13250 0.83 +0.1 747,996 + BBR_RS13250 0.84 +0.5 748,008 + BBR_RS13250 0.85 +0.7 748,016 - BBR_RS13250 0.85 +0.3 748,022 - BBR_RS13250 0.86 -0.9 748,058 + BBR_RS13250 0.88 +2.0 748,083 + BBR_RS13250 0.89 -0.9 748,086 - BBR_RS13250 0.89 -0.0 748,086 - BBR_RS13250 0.89 -0.4 748,091 - BBR_RS13250 0.89 -0.4 748,148 - +0.6 748,157 - +1.3 748,213 - -0.8 748,218 + -0.2 748,236 + +0.4 748,239 - -1.6 748,243 - +0.6 748,244 + -2.4 748,244 - -0.3 748,308 + -0.9 748,308 + -0.5 748,414 + -0.1 748,415 + -1.1 748,428 - +0.8 748,428 - -0.1 748,471 + +1.1 748,471 + -1.6 748,471 + +0.1 748,471 + -0.2 748,479 - -1.8 748,479 - -1.1 748,479 - +1.0 748,479 - +0.4 748,479 - +0.7 748,491 + +0.3 748,499 - -1.7 748,499 - -1.6 748,552 - BBR_RS13255 0.20 +0.5 748,573 + BBR_RS13255 0.32 -2.1 748,588 - BBR_RS13255 0.41 +0.8 748,618 + BBR_RS13255 0.58 +0.1 748,618 + BBR_RS13255 0.58 -0.7 748,618 - BBR_RS13255 0.58 +1.2 748,642 - BBR_RS13255 0.71 -0.4 748,654 + BBR_RS13255 0.78 -1.2 748,657 - BBR_RS13255 0.80 -0.5 748,662 - BBR_RS13255 0.82 -1.0 748,671 - BBR_RS13255 0.88 -0.5 748,834 + +0.5 748,842 + +0.1 748,897 + -0.8 748,946 - -0.5 748,953 + +0.6 748,981 + BBR_RS13260 0.11 -1.9 748,996 + BBR_RS13260 0.12 +1.8 749,013 - BBR_RS13260 0.13 +0.2 749,023 - BBR_RS13260 0.14 -0.3 749,023 - BBR_RS13260 0.14 +0.0 749,058 - BBR_RS13260 0.16 -0.4 749,078 + BBR_RS13260 0.17 -1.3 749,097 + BBR_RS13260 0.19 +1.0 749,115 + BBR_RS13260 0.20 -0.3 749,146 - BBR_RS13260 0.22 -0.7 749,146 - BBR_RS13260 0.22 -0.4 749,158 + BBR_RS13260 0.22 -2.1 749,158 + BBR_RS13260 0.22 -1.0 749,165 - BBR_RS13260 0.23 -0.5 749,181 + BBR_RS13260 0.24 +0.6 749,201 - BBR_RS13260 0.25 -0.1 749,244 - BBR_RS13260 0.28 +0.8 749,244 - BBR_RS13260 0.28 -0.7 749,276 - BBR_RS13260 0.30 +0.6 749,276 - BBR_RS13260 0.30 -0.5 749,320 + BBR_RS13260 0.32 -0.0 749,338 - BBR_RS13260 0.34 -1.1 749,421 + BBR_RS13260 0.39 -1.6 749,429 + BBR_RS13260 0.39 -0.0 749,441 - BBR_RS13260 0.40 +0.3 749,461 - BBR_RS13260 0.41 +0.3 749,514 + BBR_RS13260 0.44 -2.5 749,522 - BBR_RS13260 0.45 -0.7 749,536 - BBR_RS13260 0.46 +0.6 749,545 + BBR_RS13260 0.46 +0.2 749,545 + BBR_RS13260 0.46 -0.6 749,545 + BBR_RS13260 0.46 +1.0 749,545 + BBR_RS13260 0.46 -0.1 749,553 - BBR_RS13260 0.47 -1.8 749,555 + BBR_RS13260 0.47 -0.1 749,563 - BBR_RS13260 0.47 +0.4 749,569 + BBR_RS13260 0.48 +0.3 749,624 - BBR_RS13260 0.51 -1.3 749,634 + BBR_RS13260 0.52 -0.4 749,669 + BBR_RS13260 0.54 -1.6 749,677 - BBR_RS13260 0.54 -1.1 749,719 + BBR_RS13260 0.57 -0.4 749,727 - BBR_RS13260 0.58 +0.5 749,787 + BBR_RS13260 0.61 +1.5 749,787 + BBR_RS13260 0.61 -0.0 749,795 - BBR_RS13260 0.62 -0.2 749,802 + BBR_RS13260 0.62 +0.0 749,867 - BBR_RS13260 0.66 +1.2 749,894 + BBR_RS13260 0.68 +0.3 749,934 + BBR_RS13260 0.70 +0.2 750,025 - BBR_RS13260 0.76 +0.6 750,042 + BBR_RS13260 0.77 -1.2 750,096 - BBR_RS13260 0.80 -0.3 750,098 + BBR_RS13260 0.80 -0.4 750,098 + BBR_RS13260 0.80 +0.1 750,098 + BBR_RS13260 0.80 -0.9 750,098 + BBR_RS13260 0.80 -0.6 750,098 + BBR_RS13260 0.80 +1.7 750,098 + BBR_RS13260 0.80 -1.1 750,098 + BBR_RS13260 0.80 +1.1 750,106 - BBR_RS13260 0.81 -1.1 750,106 - BBR_RS13260 0.81 -2.3 750,107 + BBR_RS13260 0.81 -0.5 750,108 + BBR_RS13260 0.81 +0.5 750,126 - BBR_RS13260 0.82 -0.3 750,159 + BBR_RS13260 0.84 +0.4 750,238 + BBR_RS13260 0.89 +0.5 750,240 + BBR_RS13260 0.89 -0.7 750,374 + +0.5 750,374 + +0.8 750,375 - -0.2 750,381 - -0.3 750,381 - -1.0 750,385 + -0.3 750,393 - +1.6 750,395 + -1.9 750,413 + +0.5 750,445 + +1.1 750,463 - -0.4 750,463 - +1.0 750,463 - -1.8 750,465 + +0.9 750,475 + BBR_RS13265 0.12 +0.5 750,514 + BBR_RS13265 0.20 +1.1 750,522 - BBR_RS13265 0.22 -1.4 750,529 + BBR_RS13265 0.23 +0.9 750,529 + BBR_RS13265 0.23 +0.3 750,531 + BBR_RS13265 0.23 -1.5 750,534 + BBR_RS13265 0.24 +1.0 750,534 + BBR_RS13265 0.24 -0.8 750,544 + BBR_RS13265 0.26 +0.3 750,559 + BBR_RS13265 0.29 -0.9 750,559 + BBR_RS13265 0.29 -0.2 750,619 - BBR_RS13265 0.41 -1.2 750,652 + BBR_RS13265 0.48 +0.7 750,678 + BBR_RS13265 0.53 +1.7 750,678 + BBR_RS13265 0.53 +1.0 750,705 - BBR_RS13265 0.59 -0.8 750,713 + BBR_RS13265 0.60 +0.6 750,713 + BBR_RS13265 0.60 -0.8 750,713 + BBR_RS13265 0.60 +1.5 750,713 + BBR_RS13265 0.60 +1.0 750,715 + BBR_RS13265 0.61 -0.3 750,716 - BBR_RS13265 0.61 +0.7 750,721 - BBR_RS13265 0.62 +1.8 750,786 + BBR_RS13265 0.75 +1.8 750,794 - BBR_RS13265 0.77 +0.9 750,814 + BBR_RS13265 0.81 +1.0 750,821 + BBR_RS13265 0.82 -1.5 750,837 - BBR_RS13265 0.86 +0.6 750,840 - BBR_RS13265 0.86 -1.9 750,847 - BBR_RS13265 0.88 +1.4 750,847 - BBR_RS13265 0.88 -0.2 750,854 + BBR_RS13265 0.89 -1.8 750,854 + BBR_RS13265 0.89 +0.7 750,902 + -0.6 750,902 + -2.0 750,910 - +0.6 750,910 - -0.1 750,921 - -0.1 750,931 - +0.2 750,973 + -0.7 750,981 - -1.5 750,981 - -0.4 750,981 - +0.2 750,982 - -2.0 751,088 + BBR_RS20750 0.34 +0.0 751,108 - BBR_RS20750 0.50 +0.9 751,108 - BBR_RS20750 0.50 +1.0 751,160 + +1.0 751,160 + -1.3 751,162 + -1.5 751,162 + +0.3 751,162 + -2.3 751,162 + +0.6 751,170 - +0.9 751,212 - BBR_RS20755 0.13 -0.2 751,217 + BBR_RS20755 0.15 +1.0 751,217 + BBR_RS20755 0.15 -0.0 751,225 - BBR_RS20755 0.18 -0.2 751,225 - BBR_RS20755 0.18 -0.8 751,230 + BBR_RS20755 0.19 -1.3 751,230 + BBR_RS20755 0.19 +0.8 751,238 - BBR_RS20755 0.22 -0.8 751,293 - BBR_RS20755 0.40 -0.5 751,345 - BBR_RS20755 0.58 +1.2 751,365 + BBR_RS20755 0.65 -0.6 751,373 - BBR_RS20755 0.67 -1.4 751,413 + BBR_RS20755 0.81 +1.1 751,413 - BBR_RS20755 0.81 +0.8 751,413 - BBR_RS20755 0.81 +0.8
Or see this region's nucleotide sequence