Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20750

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13260 and BBR_RS13265 are separated by 1 nucleotidesBBR_RS13265 and BBR_RS20750 are separated by 137 nucleotidesBBR_RS20750 and BBR_RS20755 are separated by 1 nucleotidesBBR_RS20755 and BBR_RS13270 are separated by 131 nucleotides BBR_RS13260: BBR_RS13260 - ABC transporter substrate-binding protein, at 748,795 to 750,414 _RS13260 BBR_RS13265: BBR_RS13265 - peptide methionine sulfoxide reductase msrA/msrB, at 750,416 to 750,907 _RS13265 BBR_RS20750: BBR_RS20750 - GntR family transcriptional regulator, at 751,045 to 751,170 _RS20750 BBR_RS20755: BBR_RS20755 - IS3 family transposase, at 751,172 to 751,470 _RS20755 BBR_RS13270: BBR_RS13270 - ABC transporter ATP-binding protein, at 751,602 to 752,414 _RS13270 Position (kb) 751 752Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 750.096 kb on - strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.098 kb on + strand, within BBR_RS13260at 750.106 kb on - strand, within BBR_RS13260at 750.106 kb on - strand, within BBR_RS13260at 750.107 kb on + strand, within BBR_RS13260at 750.108 kb on + strand, within BBR_RS13260at 750.126 kb on - strand, within BBR_RS13260at 750.159 kb on + strand, within BBR_RS13260at 750.238 kb on + strand, within BBR_RS13260at 750.240 kb on + strand, within BBR_RS13260at 750.374 kb on + strandat 750.374 kb on + strandat 750.375 kb on - strandat 750.381 kb on - strandat 750.381 kb on - strandat 750.385 kb on + strandat 750.393 kb on - strandat 750.395 kb on + strandat 750.413 kb on + strandat 750.445 kb on + strandat 750.463 kb on - strandat 750.463 kb on - strandat 750.463 kb on - strandat 750.465 kb on + strandat 750.475 kb on + strand, within BBR_RS13265at 750.514 kb on + strand, within BBR_RS13265at 750.522 kb on - strand, within BBR_RS13265at 750.529 kb on + strand, within BBR_RS13265at 750.529 kb on + strand, within BBR_RS13265at 750.531 kb on + strand, within BBR_RS13265at 750.534 kb on + strand, within BBR_RS13265at 750.534 kb on + strand, within BBR_RS13265at 750.544 kb on + strand, within BBR_RS13265at 750.559 kb on + strand, within BBR_RS13265at 750.559 kb on + strand, within BBR_RS13265at 750.619 kb on - strand, within BBR_RS13265at 750.652 kb on + strand, within BBR_RS13265at 750.678 kb on + strand, within BBR_RS13265at 750.678 kb on + strand, within BBR_RS13265at 750.705 kb on - strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.713 kb on + strand, within BBR_RS13265at 750.715 kb on + strand, within BBR_RS13265at 750.716 kb on - strand, within BBR_RS13265at 750.721 kb on - strand, within BBR_RS13265at 750.786 kb on + strand, within BBR_RS13265at 750.794 kb on - strand, within BBR_RS13265at 750.814 kb on + strand, within BBR_RS13265at 750.821 kb on + strand, within BBR_RS13265at 750.837 kb on - strand, within BBR_RS13265at 750.840 kb on - strand, within BBR_RS13265at 750.847 kb on - strand, within BBR_RS13265at 750.847 kb on - strand, within BBR_RS13265at 750.854 kb on + strand, within BBR_RS13265at 750.854 kb on + strand, within BBR_RS13265at 750.902 kb on + strandat 750.902 kb on + strandat 750.910 kb on - strandat 750.910 kb on - strandat 750.921 kb on - strandat 750.931 kb on - strandat 750.973 kb on + strandat 750.981 kb on - strandat 750.981 kb on - strandat 750.981 kb on - strandat 750.982 kb on - strandat 751.088 kb on + strand, within BBR_RS20750at 751.108 kb on - strand, within BBR_RS20750at 751.108 kb on - strand, within BBR_RS20750at 751.160 kb on + strandat 751.160 kb on + strandat 751.162 kb on + strandat 751.162 kb on + strandat 751.162 kb on + strandat 751.162 kb on + strandat 751.170 kb on - strandat 751.212 kb on - strand, within BBR_RS20755at 751.217 kb on + strand, within BBR_RS20755at 751.217 kb on + strand, within BBR_RS20755at 751.225 kb on - strand, within BBR_RS20755at 751.225 kb on - strand, within BBR_RS20755at 751.230 kb on + strand, within BBR_RS20755at 751.230 kb on + strand, within BBR_RS20755at 751.238 kb on - strand, within BBR_RS20755at 751.293 kb on - strand, within BBR_RS20755at 751.345 kb on - strand, within BBR_RS20755at 751.365 kb on + strand, within BBR_RS20755at 751.373 kb on - strand, within BBR_RS20755at 751.413 kb on + strand, within BBR_RS20755at 751.413 kb on - strand, within BBR_RS20755at 751.413 kb on - strand, within BBR_RS20755at 751.490 kb on + strandat 751.490 kb on + strandat 751.490 kb on + strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.498 kb on - strandat 751.519 kb on + strandat 751.596 kb on - strandat 751.597 kb on + strandat 751.624 kb on + strandat 751.671 kb on + strandat 751.679 kb on - strandat 751.689 kb on - strand, within BBR_RS13270at 751.714 kb on + strand, within BBR_RS13270at 751.742 kb on - strand, within BBR_RS13270at 751.744 kb on + strand, within BBR_RS13270at 751.752 kb on + strand, within BBR_RS13270at 751.754 kb on + strand, within BBR_RS13270at 751.754 kb on + strand, within BBR_RS13270at 751.754 kb on + strand, within BBR_RS13270at 751.761 kb on + strand, within BBR_RS13270at 751.768 kb on + strand, within BBR_RS13270at 751.771 kb on + strand, within BBR_RS13270at 751.775 kb on + strand, within BBR_RS13270at 751.833 kb on - strand, within BBR_RS13270at 751.833 kb on - strand, within BBR_RS13270at 751.833 kb on - strand, within BBR_RS13270at 751.843 kb on - strand, within BBR_RS13270at 751.881 kb on + strand, within BBR_RS13270at 751.901 kb on - strand, within BBR_RS13270at 751.951 kb on + strand, within BBR_RS13270at 751.988 kb on + strand, within BBR_RS13270at 751.988 kb on + strand, within BBR_RS13270at 751.988 kb on + strand, within BBR_RS13270at 752.055 kb on - strand, within BBR_RS13270at 752.055 kb on - strand, within BBR_RS13270at 752.097 kb on - strand, within BBR_RS13270at 752.107 kb on + strand, within BBR_RS13270at 752.138 kb on + strand, within BBR_RS13270at 752.162 kb on + strand, within BBR_RS13270at 752.170 kb on - strand, within BBR_RS13270

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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750,096 - BBR_RS13260 0.80 +0.1
750,098 + BBR_RS13260 0.80 -1.8
750,098 + BBR_RS13260 0.80 -2.7
750,098 + BBR_RS13260 0.80 -1.9
750,098 + BBR_RS13260 0.80 +0.2
750,098 + BBR_RS13260 0.80 -1.0
750,098 + BBR_RS13260 0.80 +0.4
750,098 + BBR_RS13260 0.80 -0.1
750,106 - BBR_RS13260 0.81 +2.2
750,106 - BBR_RS13260 0.81 -1.9
750,107 + BBR_RS13260 0.81 +1.6
750,108 + BBR_RS13260 0.81 +1.3
750,126 - BBR_RS13260 0.82 +1.4
750,159 + BBR_RS13260 0.84 +1.9
750,238 + BBR_RS13260 0.89 -1.1
750,240 + BBR_RS13260 0.89 +0.9
750,374 + -0.3
750,374 + +0.9
750,375 - -1.0
750,381 - +2.1
750,381 - +2.1
750,385 + +0.3
750,393 - +0.4
750,395 + +1.2
750,413 + -2.1
750,445 + +2.0
750,463 - -1.7
750,463 - -0.1
750,463 - -1.4
750,465 + -1.6
750,475 + BBR_RS13265 0.12 -0.0
750,514 + BBR_RS13265 0.20 -1.5
750,522 - BBR_RS13265 0.22 +0.5
750,529 + BBR_RS13265 0.23 -0.8
750,529 + BBR_RS13265 0.23 +0.4
750,531 + BBR_RS13265 0.23 +1.5
750,534 + BBR_RS13265 0.24 -1.6
750,534 + BBR_RS13265 0.24 +1.7
750,544 + BBR_RS13265 0.26 +1.0
750,559 + BBR_RS13265 0.29 +2.1
750,559 + BBR_RS13265 0.29 -1.7
750,619 - BBR_RS13265 0.41 -0.6
750,652 + BBR_RS13265 0.48 -1.8
750,678 + BBR_RS13265 0.53 -0.3
750,678 + BBR_RS13265 0.53 +0.9
750,705 - BBR_RS13265 0.59 -0.6
750,713 + BBR_RS13265 0.60 -1.1
750,713 + BBR_RS13265 0.60 -0.2
750,713 + BBR_RS13265 0.60 +1.7
750,713 + BBR_RS13265 0.60 -2.0
750,715 + BBR_RS13265 0.61 +0.6
750,716 - BBR_RS13265 0.61 +2.7
750,721 - BBR_RS13265 0.62 -0.7
750,786 + BBR_RS13265 0.75 +0.5
750,794 - BBR_RS13265 0.77 +1.8
750,814 + BBR_RS13265 0.81 +2.0
750,821 + BBR_RS13265 0.82 -1.1
750,837 - BBR_RS13265 0.86 +1.1
750,840 - BBR_RS13265 0.86 -0.5
750,847 - BBR_RS13265 0.88 -1.4
750,847 - BBR_RS13265 0.88 -0.4
750,854 + BBR_RS13265 0.89 -0.3
750,854 + BBR_RS13265 0.89 +0.7
750,902 + -2.0
750,902 + -1.4
750,910 - -0.7
750,910 - +1.7
750,921 - +0.8
750,931 - -0.5
750,973 + -1.3
750,981 - +2.5
750,981 - +1.7
750,981 - -0.4
750,982 - -1.2
751,088 + BBR_RS20750 0.34 -1.7
751,108 - BBR_RS20750 0.50 -0.4
751,108 - BBR_RS20750 0.50 -1.6
751,160 + -0.1
751,160 + -1.8
751,162 + +0.9
751,162 + -0.9
751,162 + +0.9
751,162 + -0.9
751,170 - +1.1
751,212 - BBR_RS20755 0.13 +0.8
751,217 + BBR_RS20755 0.15 +1.2
751,217 + BBR_RS20755 0.15 -0.8
751,225 - BBR_RS20755 0.18 -0.7
751,225 - BBR_RS20755 0.18 -0.4
751,230 + BBR_RS20755 0.19 -0.3
751,230 + BBR_RS20755 0.19 +0.6
751,238 - BBR_RS20755 0.22 -0.2
751,293 - BBR_RS20755 0.40 -0.3
751,345 - BBR_RS20755 0.58 +1.3
751,365 + BBR_RS20755 0.65 +2.1
751,373 - BBR_RS20755 0.67 +1.8
751,413 + BBR_RS20755 0.81 +1.6
751,413 - BBR_RS20755 0.81 -0.4
751,413 - BBR_RS20755 0.81 +0.8
751,490 + +1.7
751,490 + -0.2
751,490 + +1.6
751,498 - -2.1
751,498 - -1.3
751,498 - +1.0
751,498 - -1.4
751,498 - +1.3
751,498 - -0.2
751,519 + +0.5
751,596 - +1.3
751,597 + +0.1
751,624 + -1.9
751,671 + -1.6
751,679 - -0.8
751,689 - BBR_RS13270 0.11 +1.7
751,714 + BBR_RS13270 0.14 +0.5
751,742 - BBR_RS13270 0.17 -1.3
751,744 + BBR_RS13270 0.17 +4.2
751,752 + BBR_RS13270 0.18 +0.2
751,754 + BBR_RS13270 0.19 +1.1
751,754 + BBR_RS13270 0.19 -1.8
751,754 + BBR_RS13270 0.19 +0.8
751,761 + BBR_RS13270 0.20 -0.5
751,768 + BBR_RS13270 0.20 -0.7
751,771 + BBR_RS13270 0.21 -0.5
751,775 + BBR_RS13270 0.21 +0.5
751,833 - BBR_RS13270 0.28 +1.0
751,833 - BBR_RS13270 0.28 +0.2
751,833 - BBR_RS13270 0.28 -1.1
751,843 - BBR_RS13270 0.30 +1.5
751,881 + BBR_RS13270 0.34 +2.2
751,901 - BBR_RS13270 0.37 -0.2
751,951 + BBR_RS13270 0.43 -0.1
751,988 + BBR_RS13270 0.47 +2.0
751,988 + BBR_RS13270 0.47 +0.6
751,988 + BBR_RS13270 0.47 +1.3
752,055 - BBR_RS13270 0.56 +0.6
752,055 - BBR_RS13270 0.56 -1.0
752,097 - BBR_RS13270 0.61 +1.3
752,107 + BBR_RS13270 0.62 +0.2
752,138 + BBR_RS13270 0.66 -0.6
752,162 + BBR_RS13270 0.69 -0.4
752,170 - BBR_RS13270 0.70 -2.0

Or see this region's nucleotide sequence