Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18550

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,946,879	+				-0.0
1,946,879	+				+0.4
1,946,879	+				-0.3
1,946,879	+				+0.2
1,946,882	-				-1.2
1,946,887	-				-1.4
1,946,892	-				-0.4
1,946,927	+				+1.9
1,946,995	+				+0.3
1,947,005	+				+1.2
1,947,013	-				+0.8
1,947,022	-				+1.4
1,947,022	-				+2.3
1,947,022	-				-0.7
1,947,043	+				+0.6
1,947,043	+				-1.2
1,947,053	+		BBR_RS18545	0.12	-0.6
1,947,074	+		BBR_RS18545	0.17	-0.6
1,947,082	-		BBR_RS18545	0.19	-0.6
1,947,101	+		BBR_RS18545	0.24	+0.8
1,947,119	+		BBR_RS18545	0.28	+1.7
1,947,134	+		BBR_RS18545	0.32	+0.5
1,947,147	+		BBR_RS18545	0.35	-2.2
1,947,147	+		BBR_RS18545	0.35	+0.2
1,947,150	-		BBR_RS18545	0.36	-0.7
1,947,151	+		BBR_RS18545	0.36	+1.6
1,947,155	-		BBR_RS18545	0.37	+1.3
1,947,155	-		BBR_RS18545	0.37	+0.0
1,947,171	+		BBR_RS18545	0.41	-0.7
1,947,182	+		BBR_RS18545	0.43	+0.6
1,947,190	-		BBR_RS18545	0.45	-0.3
1,947,220	-		BBR_RS18545	0.52	+0.7
1,947,296	-		BBR_RS18545	0.71	-0.9
1,947,313	+		BBR_RS18545	0.75	+1.7
1,947,347	+		BBR_RS18545	0.83	+1.6
1,947,347	+		BBR_RS18545	0.83	+0.2
1,947,347	+		BBR_RS18545	0.83	+0.5
1,947,347	+		BBR_RS18545	0.83	-0.5
1,947,357	+		BBR_RS18545	0.86	-1.4
1,947,357	+		BBR_RS18545	0.86	-1.0
1,947,375	+				-1.4
1,947,375	-				+1.4
1,947,391	+				-0.1
1,947,395	+				+0.6
1,947,405	-				-0.0
1,947,413	-				-0.3
1,947,443	-				+0.4
1,947,443	-				+1.7
1,947,443	-				+3.0
1,947,443	-				-1.2
1,947,443	-				+3.3
1,947,443	-				+2.1
1,947,460	-				-1.0
1,947,482	-				+0.0
1,947,495	-				-0.2
1,947,601	+				+1.8
1,947,606	+				+2.2
1,947,615	-				+2.0
1,947,668	+		BBR_RS18550	0.10	+0.2
1,947,689	+		BBR_RS18550	0.12	+1.0
1,947,689	+		BBR_RS18550	0.12	-0.4
1,947,689	+		BBR_RS18550	0.12	+2.1
1,947,697	-		BBR_RS18550	0.13	-1.8
1,947,699	+		BBR_RS18550	0.13	+0.3
1,947,710	+		BBR_RS18550	0.14	+1.2
1,947,744	+		BBR_RS18550	0.17	+2.4
1,947,775	+		BBR_RS18550	0.20	+1.2
1,947,783	-		BBR_RS18550	0.21	+3.7
1,947,789	+		BBR_RS18550	0.22	+3.9
1,947,794	-		BBR_RS18550	0.22	+4.0
1,947,794	-		BBR_RS18550	0.22	+4.5
1,947,813	+		BBR_RS18550	0.24	+4.2
1,947,828	-		BBR_RS18550	0.26	+1.3
1,947,828	-		BBR_RS18550	0.26	+3.7
1,947,838	-		BBR_RS18550	0.26	+3.4
1,947,847	-		BBR_RS18550	0.27	+3.8
1,947,861	+		BBR_RS18550	0.29	+3.1
1,947,863	-		BBR_RS18550	0.29	+4.5
1,947,863	-		BBR_RS18550	0.29	+4.2
1,947,952	+		BBR_RS18550	0.37	+4.3
1,947,960	-		BBR_RS18550	0.38	+2.1
1,947,960	-		BBR_RS18550	0.38	+4.0
1,947,971	-		BBR_RS18550	0.39	+3.5
1,948,002	+		BBR_RS18550	0.42	+3.8
1,948,002	+		BBR_RS18550	0.42	+3.1
1,948,031	-		BBR_RS18550	0.45	+4.2
1,948,082	+		BBR_RS18550	0.50	+4.1
1,948,090	-		BBR_RS18550	0.51	+4.2
1,948,139	-		BBR_RS18550	0.55	+3.8
1,948,144	-		BBR_RS18550	0.56	+3.1
1,948,150	-		BBR_RS18550	0.57	+3.6
1,948,157	+		BBR_RS18550	0.57	+4.3
1,948,162	-		BBR_RS18550	0.58	+4.6
1,948,175	-		BBR_RS18550	0.59	+1.9
1,948,208	-		BBR_RS18550	0.62	+2.6
1,948,226	+		BBR_RS18550	0.64	+4.5
1,948,242	+		BBR_RS18550	0.65	+3.7
1,948,244	-		BBR_RS18550	0.66	+3.6
1,948,281	-		BBR_RS18550	0.69	+3.9
1,948,287	-		BBR_RS18550	0.70	+2.5
1,948,287	-		BBR_RS18550	0.70	+4.5
1,948,347	+		BBR_RS18550	0.76	+4.3
1,948,355	+		BBR_RS18550	0.76	+3.1
1,948,357	+		BBR_RS18550	0.76	+4.7
1,948,363	-		BBR_RS18550	0.77	+2.8
1,948,363	-		BBR_RS18550	0.77	+4.2
1,948,371	+		BBR_RS18550	0.78	+4.4
1,948,385	-		BBR_RS18550	0.79	+4.3
1,948,399	-		BBR_RS18550	0.81	+3.6
1,948,464	-		BBR_RS18550	0.87	+4.0
1,948,504	+				+2.8
1,948,543	-				+4.8
1,948,551	-				+4.2
1,948,578	+				+4.2
1,948,592	-				+4.4
1,948,598	+				+4.6
1,948,617	-				+2.4
1,948,617	-				-1.7
1,948,627	+				+3.2
1,948,720	+				+0.5
1,948,751	+				+1.1
1,948,751	+				-0.0
1,948,754	+				-1.6
1,948,759	-				+0.8
1,948,809	-				-0.3
1,948,821	+				-1.2
1,948,888	+				+0.7
1,948,916	-		BBR_RS18555	0.13	-0.5
1,948,916	-		BBR_RS18555	0.13	+0.4
1,948,918	-		BBR_RS18555	0.13	-0.4
1,948,921	-		BBR_RS18555	0.14	+0.0
1,948,981	+		BBR_RS18555	0.22	-0.8
1,948,993	+		BBR_RS18555	0.24	+1.5
1,948,998	+		BBR_RS18555	0.24	+1.8
1,949,001	-		BBR_RS18555	0.25	-1.5
1,949,015	+		BBR_RS18555	0.27	+1.2
1,949,015	+		BBR_RS18555	0.27	-1.9
1,949,015	-		BBR_RS18555	0.27	-0.5
1,949,053	+		BBR_RS18555	0.32	-2.2
1,949,059	-		BBR_RS18555	0.33	+0.1
1,949,063	+		BBR_RS18555	0.33	-0.6
1,949,071	-		BBR_RS18555	0.34	-0.6
1,949,079	+		BBR_RS18555	0.36	+0.6
1,949,087	-		BBR_RS18555	0.37	+0.6
1,949,087	-		BBR_RS18555	0.37	-2.1
1,949,087	-		BBR_RS18555	0.37	-1.8
1,949,091	-		BBR_RS18555	0.37	-0.1
1,949,097	-		BBR_RS18555	0.38	-2.3
1,949,103	+		BBR_RS18555	0.39	+1.3
1,949,111	-		BBR_RS18555	0.40	+0.7
1,949,117	-		BBR_RS18555	0.41	-0.9
1,949,127	+		BBR_RS18555	0.42	+0.0
1,949,150	+		BBR_RS18555	0.45	-1.2
1,949,153	-		BBR_RS18555	0.46	-0.4
1,949,183	-		BBR_RS18555	0.50	-0.5
1,949,210	-		BBR_RS18555	0.54	-0.2
1,949,215	-		BBR_RS18555	0.54	+2.5
1,949,225	-		BBR_RS18555	0.56	+0.4
1,949,232	-		BBR_RS18555	0.57	-0.3
1,949,239	+		BBR_RS18555	0.58	+0.9
1,949,239	+		BBR_RS18555	0.58	-2.4
1,949,239	+		BBR_RS18555	0.58	+0.4
1,949,239	+		BBR_RS18555	0.58	+1.2
1,949,247	-		BBR_RS18555	0.59	-1.0
1,949,247	-		BBR_RS18555	0.59	-0.1
1,949,247	-		BBR_RS18555	0.59	-1.1
1,949,299	+		BBR_RS18555	0.66	+0.6
1,949,329	-		BBR_RS18555	0.70	-0.2
1,949,341	+		BBR_RS18555	0.72	-1.8
1,949,362	+		BBR_RS18555	0.75	-0.7
1,949,428	+		BBR_RS18555	0.84	-1.9
1,949,433	+		BBR_RS18555	0.84	+0.4
1,949,433	+		BBR_RS18555	0.84	-0.6
1,949,441	-		BBR_RS18555	0.85	-0.1
1,949,443	-		BBR_RS18555	0.86	-1.1
1,949,451	-		BBR_RS18555	0.87	-1.1
1,949,487	+				-0.4
1,949,495	-				+2.6
1,949,544	-				+0.6
1,949,549	+				+1.1
1,949,549	+				+2.6
1,949,586	+				-0.1
1,949,586	+				+0.1
1,949,594	-				-1.7
1,949,594	-				+1.0