Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17825

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,778,089	-				+0.9
1,778,115	+				+1.0
1,778,216	+				-2.0
1,778,224	-		BBR_RS17820	0.10	-0.5
1,778,257	-		BBR_RS17820	0.14	-0.4
1,778,290	-		BBR_RS17820	0.17	-1.5
1,778,298	+		BBR_RS17820	0.18	-2.1
1,778,302	+		BBR_RS17820	0.18	-0.9
1,778,316	-		BBR_RS17820	0.20	+0.3
1,778,355	+		BBR_RS17820	0.24	+0.9
1,778,355	+		BBR_RS17820	0.24	-2.7
1,778,363	-		BBR_RS17820	0.25	-0.6
1,778,381	-		BBR_RS17820	0.27	-0.1
1,778,383	+		BBR_RS17820	0.27	-0.9
1,778,480	-		BBR_RS17820	0.37	+1.1
1,778,546	+		BBR_RS17820	0.44	-0.3
1,778,563	-		BBR_RS17820	0.46	+0.4
1,778,568	+		BBR_RS17820	0.46	-0.1
1,778,621	+		BBR_RS17820	0.52	+1.3
1,778,638	+		BBR_RS17820	0.54	+1.5
1,778,646	-		BBR_RS17820	0.54	+1.6
1,778,649	-		BBR_RS17820	0.55	-0.7
1,778,649	-		BBR_RS17820	0.55	-1.4
1,778,658	+		BBR_RS17820	0.56	-0.1
1,778,660	+		BBR_RS17820	0.56	+0.5
1,778,660	+		BBR_RS17820	0.56	+1.1
1,778,660	+		BBR_RS17820	0.56	+1.3
1,778,666	-		BBR_RS17820	0.57	-0.7
1,778,666	-		BBR_RS17820	0.57	-1.2
1,778,739	-		BBR_RS17820	0.64	+0.5
1,778,746	+		BBR_RS17820	0.65	+0.1
1,778,761	-		BBR_RS17820	0.66	+0.1
1,778,798	-		BBR_RS17820	0.70	-1.0
1,778,801	+		BBR_RS17820	0.71	+0.5
1,778,811	+		BBR_RS17820	0.72	+2.6
1,778,838	+		BBR_RS17820	0.75	+0.4
1,778,838	+		BBR_RS17820	0.75	+1.2
1,778,902	-		BBR_RS17820	0.81	+1.4
1,778,910	-		BBR_RS17820	0.82	-1.4
1,778,929	-		BBR_RS17820	0.84	-0.9
1,778,946	-		BBR_RS17820	0.86	-0.9
1,779,032	+				-0.7
1,779,071	+				-0.8
1,779,079	-				-0.6
1,779,079	-				+1.2
1,779,110	-				-0.5
1,779,170	+		BBR_RS17825	0.14	+0.3
1,779,183	+		BBR_RS17825	0.16	-0.2
1,779,183	+		BBR_RS17825	0.16	-1.1
1,779,206	-		BBR_RS17825	0.19	+0.3
1,779,217	+		BBR_RS17825	0.20	-0.9
1,779,217	+		BBR_RS17825	0.20	+1.4
1,779,225	-		BBR_RS17825	0.22	+1.2
1,779,225	-		BBR_RS17825	0.22	-0.7
1,779,225	-		BBR_RS17825	0.22	-1.4
1,779,234	-		BBR_RS17825	0.23	+0.6
1,779,273	-		BBR_RS17825	0.28	-1.7
1,779,300	-		BBR_RS17825	0.32	-1.2
1,779,320	-		BBR_RS17825	0.35	-0.6
1,779,320	-		BBR_RS17825	0.35	+0.5
1,779,320	-		BBR_RS17825	0.35	-0.7
1,779,336	+		BBR_RS17825	0.37	-2.2
1,779,342	+		BBR_RS17825	0.38	-0.4
1,779,379	+		BBR_RS17825	0.43	+1.0
1,779,389	+		BBR_RS17825	0.45	-0.3
1,779,389	+		BBR_RS17825	0.45	-0.6
1,779,397	-		BBR_RS17825	0.46	-1.5
1,779,397	-		BBR_RS17825	0.46	-0.5
1,779,398	-		BBR_RS17825	0.46	-1.1
1,779,420	-		BBR_RS17825	0.49	+0.6
1,779,427	+		BBR_RS17825	0.50	+0.9
1,779,435	-		BBR_RS17825	0.51	-1.6
1,779,445	-		BBR_RS17825	0.53	+0.0
1,779,454	+		BBR_RS17825	0.54	-0.8
1,779,462	-		BBR_RS17825	0.55	-1.8
1,779,462	-		BBR_RS17825	0.55	-0.8
1,779,462	-		BBR_RS17825	0.55	-2.2
1,779,475	-		BBR_RS17825	0.57	-0.5
1,779,520	+		BBR_RS17825	0.64	+1.8
1,779,521	+		BBR_RS17825	0.64	+0.8
1,779,521	+		BBR_RS17825	0.64	-1.1
1,779,526	+		BBR_RS17825	0.64	+0.5
1,779,526	+		BBR_RS17825	0.64	+1.7
1,779,537	-		BBR_RS17825	0.66	-1.2
1,779,583	+		BBR_RS17825	0.73	-2.5
1,779,583	+		BBR_RS17825	0.73	-2.4
1,779,584	+		BBR_RS17825	0.73	+1.3
1,779,584	+		BBR_RS17825	0.73	+0.3
1,779,589	+		BBR_RS17825	0.73	-1.6
1,779,589	+		BBR_RS17825	0.73	+2.3
1,779,592	-		BBR_RS17825	0.74	-0.3
1,779,592	-		BBR_RS17825	0.74	+1.6
1,779,592	-		BBR_RS17825	0.74	+0.3
1,779,592	-		BBR_RS17825	0.74	-0.2
1,779,592	-		BBR_RS17825	0.74	-0.7
1,779,597	-		BBR_RS17825	0.75	-0.7
1,779,603	+		BBR_RS17825	0.75	-0.4
1,779,626	-		BBR_RS17825	0.79	+1.7
1,779,760	-				+1.1
1,779,760	-				-1.1
1,779,766	+				+0.4
1,779,833	+				-1.5
1,779,839	+				-0.9
1,779,839	+				-0.1
1,779,839	+				+0.0
1,779,841	-				+1.3
1,779,841	-				-0.0
1,779,846	+				-1.3
1,779,847	+				-1.6
1,779,847	+				-0.2
1,779,847	-				-0.6
1,779,847	-				-1.5
1,779,896	-		BBR_RS17830	0.16	-0.1
1,779,896	-		BBR_RS17830	0.16	-0.6
1,779,906	-		BBR_RS17830	0.17	-2.4
1,779,917	-		BBR_RS17830	0.18	-0.3
1,779,932	-		BBR_RS17830	0.20	+0.1
1,779,941	+		BBR_RS17830	0.21	+0.3
1,779,949	-		BBR_RS17830	0.22	-0.0
1,779,968	+		BBR_RS17830	0.25	-1.1
1,779,973	-		BBR_RS17830	0.25	+0.4
1,779,976	-		BBR_RS17830	0.25	-0.1
1,779,976	-		BBR_RS17830	0.25	+1.4
1,779,986	-		BBR_RS17830	0.27	+0.6
1,780,026	+		BBR_RS17830	0.32	-1.2
1,780,074	-		BBR_RS17830	0.38	-1.4
1,780,079	+		BBR_RS17830	0.38	+1.7
1,780,100	-		BBR_RS17830	0.41	+1.9
1,780,175	+		BBR_RS17830	0.50	+0.3
1,780,180	+		BBR_RS17830	0.50	+1.9
1,780,197	-		BBR_RS17830	0.53	-0.7
1,780,208	+		BBR_RS17830	0.54	+1.0
1,780,217	+		BBR_RS17830	0.55	-0.0
1,780,248	+		BBR_RS17830	0.59	-0.1
1,780,248	+		BBR_RS17830	0.59	+0.1
1,780,343	+		BBR_RS17830	0.70	+0.6
1,780,346	-		BBR_RS17830	0.71	+0.6
1,780,347	-		BBR_RS17830	0.71	+1.2
1,780,351	+		BBR_RS17830	0.71	-2.0
1,780,398	+		BBR_RS17830	0.77	+2.4
1,780,398	+		BBR_RS17830	0.77	-1.1
1,780,449	-		BBR_RS17830	0.83	-0.7
1,780,460	+		BBR_RS17830	0.85	+0.7
1,780,460	+		BBR_RS17830	0.85	-0.6
1,780,460	+		BBR_RS17830	0.85	-2.1
1,780,468	-		BBR_RS17830	0.86	+0.3
1,780,468	-		BBR_RS17830	0.86	+1.8
1,780,468	-		BBR_RS17830	0.86	+0.1
1,780,470	+		BBR_RS17830	0.86	+0.5
1,780,470	+		BBR_RS17830	0.86	+0.5
1,780,470	+		BBR_RS17830	0.86	+0.1
1,780,473	-		BBR_RS17830	0.86	+0.8
1,780,475	+		BBR_RS17830	0.87	-2.4
1,780,478	-		BBR_RS17830	0.87	-1.9
1,780,478	-		BBR_RS17830	0.87	+1.4
1,780,478	-		BBR_RS17830	0.87	+0.3
1,780,493	+		BBR_RS17830	0.89	-0.3
1,780,530	-				-0.5
1,780,539	-				-1.0
1,780,539	-				+1.7
1,780,541	+				-1.4
1,780,546	+				+0.2
1,780,554	-				+3.2
1,780,626	-				+1.8
1,780,675	+		BBR_RS17835	0.11	+1.5
1,780,683	-		BBR_RS17835	0.12	-0.8
1,780,683	-		BBR_RS17835	0.12	+0.5
1,780,683	-		BBR_RS17835	0.12	-0.3
1,780,712	-		BBR_RS17835	0.16	+1.0
1,780,712	-		BBR_RS17835	0.16	-0.0
1,780,714	+		BBR_RS17835	0.16	-0.8
1,780,733	+		BBR_RS17835	0.18	+2.7
1,780,741	-		BBR_RS17835	0.19	-1.9
1,780,741	-		BBR_RS17835	0.19	+1.6
1,780,748	-		BBR_RS17835	0.20	-0.9
1,780,751	+		BBR_RS17835	0.21	-0.1
1,780,759	+		BBR_RS17835	0.22	-0.7
1,780,759	+		BBR_RS17835	0.22	+0.8