Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17570

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,719,477	-		BBR_RS17565	0.47	+3.1
1,719,485	-		BBR_RS17565	0.48	+0.4
1,719,487	+		BBR_RS17565	0.48	-0.5
1,719,487	+		BBR_RS17565	0.48	-0.1
1,719,487	+		BBR_RS17565	0.48	+1.0
1,719,488	-		BBR_RS17565	0.48	+0.4
1,719,488	-		BBR_RS17565	0.48	-2.2
1,719,506	+		BBR_RS17565	0.49	+2.6
1,719,533	+		BBR_RS17565	0.50	-1.3
1,719,533	+		BBR_RS17565	0.50	-0.8
1,719,533	+		BBR_RS17565	0.50	-0.9
1,719,541	-		BBR_RS17565	0.51	-0.3
1,719,543	+		BBR_RS17565	0.51	-0.9
1,719,546	-		BBR_RS17565	0.51	-1.2
1,719,551	+		BBR_RS17565	0.51	-1.2
1,719,551	+		BBR_RS17565	0.51	+0.5
1,719,551	-		BBR_RS17565	0.51	-2.3
1,719,561	-		BBR_RS17565	0.52	-0.8
1,719,564	-		BBR_RS17565	0.52	+1.6
1,719,565	+		BBR_RS17565	0.52	-1.0
1,719,567	+		BBR_RS17565	0.52	+0.1
1,719,573	-		BBR_RS17565	0.53	+2.4
1,719,573	-		BBR_RS17565	0.53	-0.3
1,719,586	-		BBR_RS17565	0.54	-0.1
1,719,600	-		BBR_RS17565	0.54	-0.9
1,719,606	+		BBR_RS17565	0.55	+0.0
1,719,709	-		BBR_RS17565	0.61	-0.6
1,719,758	+		BBR_RS17565	0.64	-0.1
1,719,758	+		BBR_RS17565	0.64	+2.3
1,719,766	-		BBR_RS17565	0.64	+1.1
1,719,766	-		BBR_RS17565	0.64	+1.0
1,719,810	+		BBR_RS17565	0.67	-0.3
1,719,842	-		BBR_RS17565	0.69	-0.0
1,719,849	-		BBR_RS17565	0.69	+0.5
1,719,849	-		BBR_RS17565	0.69	-1.0
1,719,860	+		BBR_RS17565	0.70	+1.1
1,719,860	+		BBR_RS17565	0.70	-0.1
1,719,860	+		BBR_RS17565	0.70	+2.4
1,719,868	-		BBR_RS17565	0.71	-1.2
1,719,874	+		BBR_RS17565	0.71	-1.7
1,719,880	-		BBR_RS17565	0.71	-0.6
1,719,880	-		BBR_RS17565	0.71	+0.7
1,719,891	+		BBR_RS17565	0.72	+3.1
1,719,899	-		BBR_RS17565	0.72	-1.6
1,719,899	-		BBR_RS17565	0.72	-1.1
1,719,899	-		BBR_RS17565	0.72	+1.3
1,719,924	-		BBR_RS17565	0.74	-0.1
1,719,960	+		BBR_RS17565	0.76	-1.4
1,719,960	+		BBR_RS17565	0.76	+1.6
1,720,037	+		BBR_RS17565	0.81	+1.4
1,720,070	+		BBR_RS17565	0.83	+1.3
1,720,070	+		BBR_RS17565	0.83	-2.1
1,720,133	+		BBR_RS17565	0.86	+1.8
1,720,148	+		BBR_RS17565	0.87	-0.8
1,720,153	-		BBR_RS17565	0.88	+2.8
1,720,156	-		BBR_RS17565	0.88	+1.7
1,720,179	+		BBR_RS17565	0.89	-1.4
1,720,255	+				+0.4
1,720,255	+				-0.7
1,720,263	-				-2.3
1,720,283	-				-0.6
1,720,283	-				-2.1
1,720,295	-				-1.7
1,720,345	-				-0.4
1,720,355	-				-1.4
1,720,426	+				+0.2
1,720,430	+				+1.3
1,720,438	-				-1.0
1,720,438	-				-0.5
1,720,473	-				+0.7
1,720,480	+				-0.9
1,720,480	+				-1.5
1,720,480	+				+0.5
1,720,482	+				-1.3
1,720,490	-				-0.5
1,720,490	-				-1.0
1,720,490	-				-0.9
1,720,493	-				-0.5
1,720,493	-				+1.9
1,720,523	-				+2.0
1,720,539	-				+0.3
1,720,559	-		BBR_RS17570	0.12	-1.2
1,720,570	+		BBR_RS17570	0.14	+1.7
1,720,588	-		BBR_RS17570	0.16	+0.3
1,720,605	-		BBR_RS17570	0.19	-0.2
1,720,640	+		BBR_RS17570	0.24	+0.4
1,720,674	+		BBR_RS17570	0.28	-0.9
1,720,680	+		BBR_RS17570	0.29	+0.3
1,720,682	-		BBR_RS17570	0.30	+0.1
1,720,682	-		BBR_RS17570	0.30	+0.0
1,720,688	-		BBR_RS17570	0.30	-0.6
1,720,712	-		BBR_RS17570	0.34	+1.2
1,720,714	-		BBR_RS17570	0.34	+0.0
1,720,740	+		BBR_RS17570	0.38	+1.1
1,720,774	+		BBR_RS17570	0.42	-0.6
1,720,793	+		BBR_RS17570	0.45	-0.1
1,720,817	+		BBR_RS17570	0.48	+0.0
1,720,843	+		BBR_RS17570	0.52	+0.6
1,720,849	+		BBR_RS17570	0.53	-0.6
1,720,856	+		BBR_RS17570	0.54	+0.9
1,720,858	-		BBR_RS17570	0.54	+1.3
1,720,858	-		BBR_RS17570	0.54	-2.1
1,720,872	-		BBR_RS17570	0.56	-0.2
1,720,897	+		BBR_RS17570	0.60	-0.1
1,720,905	-		BBR_RS17570	0.61	+0.7
1,720,907	+		BBR_RS17570	0.61	+0.1
1,720,907	+		BBR_RS17570	0.61	+0.6
1,720,915	-		BBR_RS17570	0.62	+0.7
1,720,933	+		BBR_RS17570	0.65	-1.4
1,720,957	+		BBR_RS17570	0.68	-0.2
1,720,957	+		BBR_RS17570	0.68	+1.3
1,720,957	+		BBR_RS17570	0.68	+3.5
1,720,957	+		BBR_RS17570	0.68	-1.2
1,720,965	-		BBR_RS17570	0.69	-1.8
1,720,965	-		BBR_RS17570	0.69	+0.9
1,721,001	-		BBR_RS17570	0.74	-1.2
1,721,011	-		BBR_RS17570	0.75	-0.2
1,721,021	-		BBR_RS17570	0.77	-0.3
1,721,050	+		BBR_RS17570	0.81	-1.0
1,721,055	-		BBR_RS17570	0.82	-0.3
1,721,086	-		BBR_RS17570	0.86	-0.1
1,721,092	+		BBR_RS17570	0.87	+1.2
1,721,100	-		BBR_RS17570	0.88	+1.5
1,721,149	-				+2.8
1,721,159	-				+0.6
1,721,162	-				+0.5
1,721,166	+				-1.1
1,721,226	+				-2.4
1,721,285	+				-1.5
1,721,292	+				-0.6
1,721,292	+				+1.5
1,721,297	+				-0.7
1,721,302	+				-1.2
1,721,302	+				-2.9
1,721,302	+				+2.7
1,721,305	-				+0.6
1,721,319	+				+0.2
1,721,325	-				+0.7
1,721,329	-				+0.7
1,721,329	-				+1.2
1,721,332	+				-1.0
1,721,332	+				-0.3
1,721,332	+				+1.6
1,721,332	+				-0.8
1,721,340	-				-0.5
1,721,340	-				-2.1
1,721,365	+				+1.7
1,721,371	+				+0.1
1,721,371	+				-2.3
1,721,373	-				-1.7
1,721,373	-				-0.5
1,721,403	-				+0.6
1,721,410	+				-1.7
1,721,418	-				+2.1
1,721,423	-				-1.2
1,721,423	-				+0.1
1,721,430	+				+1.0
1,721,430	+				+1.0
1,721,430	+				-1.7
1,721,440	+				-1.0
1,721,452	+				+1.9
1,721,464	+				+0.2
1,721,472	-				+0.5
1,721,522	+		BBR_RS17575	0.14	+2.6
1,721,523	+		BBR_RS17575	0.14	+2.4
1,721,531	-		BBR_RS17575	0.15	-0.8
1,721,535	+		BBR_RS17575	0.15	+1.2
1,721,535	+		BBR_RS17575	0.15	+0.1
1,721,586	+		BBR_RS17575	0.20	+0.6
1,721,588	-		BBR_RS17575	0.20	+0.3
1,721,608	-		BBR_RS17575	0.22	+1.9
1,721,608	-		BBR_RS17575	0.22	+2.2
1,721,666	-		BBR_RS17575	0.27	-0.4
1,721,684	+		BBR_RS17575	0.29	+0.2
1,721,689	+		BBR_RS17575	0.29	+1.7
1,721,689	+		BBR_RS17575	0.29	+2.2
1,721,697	-		BBR_RS17575	0.30	+0.1
1,721,716	-		BBR_RS17575	0.31	+0.8
1,721,735	+		BBR_RS17575	0.33	+0.2
1,721,735	+		BBR_RS17575	0.33	+1.2
1,721,743	+		BBR_RS17575	0.34	+1.1
1,721,743	+		BBR_RS17575	0.34	-0.7
1,721,750	-		BBR_RS17575	0.34	-0.0
1,721,751	-		BBR_RS17575	0.35	+0.7
1,721,795	-		BBR_RS17575	0.39	+0.9
1,721,820	+		BBR_RS17575	0.41	-1.3
1,721,830	-		BBR_RS17575	0.42	+2.0
1,721,849	-		BBR_RS17575	0.43	-1.1
1,721,856	-		BBR_RS17575	0.44	+1.3
1,721,861	+		BBR_RS17575	0.44	-1.3
1,721,861	+		BBR_RS17575	0.44	+2.7
1,721,897	-		BBR_RS17575	0.48	+0.1
1,721,921	+		BBR_RS17575	0.50	-0.9
1,721,921	+		BBR_RS17575	0.50	+1.0
1,721,921	+		BBR_RS17575	0.50	+0.8
1,721,929	-		BBR_RS17575	0.50	+2.1
1,721,935	+		BBR_RS17575	0.51	+0.5
1,721,962	+		BBR_RS17575	0.53	+0.2
1,721,970	-		BBR_RS17575	0.54	-0.4
1,721,970	-		BBR_RS17575	0.54	-0.3
1,721,972	+		BBR_RS17575	0.54	+0.8
1,721,972	-		BBR_RS17575	0.54	+0.9
1,721,980	-		BBR_RS17575	0.55	-1.0
1,722,029	-		BBR_RS17575	0.59	-2.0
1,722,045	+		BBR_RS17575	0.61	-1.1
1,722,045	+		BBR_RS17575	0.61	+2.6
1,722,046	-		BBR_RS17575	0.61	+1.0
1,722,077	-		BBR_RS17575	0.64	-1.1
1,722,087	-		BBR_RS17575	0.65	-0.9
1,722,107	-		BBR_RS17575	0.66	-0.0
1,722,134	-		BBR_RS17575	0.69	-0.8