Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17265

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,650,098	+		BBR_RS17255	0.18	+0.6
1,650,098	+		BBR_RS17255	0.18	+0.5
1,650,123	+		BBR_RS17255	0.22	+0.6
1,650,124	+		BBR_RS17255	0.23	-0.6
1,650,132	-		BBR_RS17255	0.24	-1.3
1,650,181	-		BBR_RS17255	0.34	-0.2
1,650,217	-		BBR_RS17255	0.40	-1.7
1,650,217	-		BBR_RS17255	0.40	-0.9
1,650,237	+		BBR_RS17255	0.44	+0.8
1,650,237	+		BBR_RS17255	0.44	-1.6
1,650,262	+		BBR_RS17255	0.49	+0.4
1,650,264	+		BBR_RS17255	0.50	+0.6
1,650,285	-		BBR_RS17255	0.54	-1.5
1,650,373	+		BBR_RS17255	0.71	+0.1
1,650,379	-		BBR_RS17255	0.72	+1.7
1,650,381	+		BBR_RS17255	0.72	+0.7
1,650,381	-		BBR_RS17255	0.72	+0.3
1,650,389	-		BBR_RS17255	0.74	-1.7
1,650,429	+		BBR_RS17255	0.81	-1.4
1,650,439	+		BBR_RS17255	0.83	-0.3
1,650,444	-		BBR_RS17255	0.84	+0.6
1,650,446	+		BBR_RS17255	0.85	+2.2
1,650,447	-		BBR_RS17255	0.85	+0.4
1,650,457	-		BBR_RS17255	0.87	+1.6
1,650,464	+		BBR_RS17255	0.88	+1.1
1,650,474	+				-0.9
1,650,517	+				-2.1
1,650,517	+				-1.0
1,650,525	-				-0.7
1,650,526	+				+1.1
1,650,595	+				+1.7
1,650,595	-				+0.5
1,650,629	-		BBR_RS17260	0.12	+1.3
1,650,648	-		BBR_RS17260	0.16	-0.6
1,650,661	+		BBR_RS17260	0.19	-0.8
1,650,669	-		BBR_RS17260	0.21	+1.3
1,650,671	+		BBR_RS17260	0.21	-0.5
1,650,755	-		BBR_RS17260	0.39	+0.7
1,650,757	-		BBR_RS17260	0.39	+0.9
1,650,833	-		BBR_RS17260	0.55	+1.3
1,650,839	+		BBR_RS17260	0.57	-2.1
1,650,852	-		BBR_RS17260	0.59	+0.8
1,650,852	-		BBR_RS17260	0.59	-0.1
1,650,874	+		BBR_RS17260	0.64	+0.4
1,650,907	+		BBR_RS17260	0.71	+0.7
1,650,907	+		BBR_RS17260	0.71	-2.0
1,650,918	+		BBR_RS17260	0.73	-0.1
1,650,926	-		BBR_RS17260	0.75	+0.6
1,650,954	+		BBR_RS17260	0.81	+1.9
1,650,954	-		BBR_RS17260	0.81	+0.7
1,650,956	+		BBR_RS17260	0.82	-2.0
1,650,980	+		BBR_RS17260	0.87	-1.0
1,650,980	+		BBR_RS17260	0.87	+0.4
1,650,988	-		BBR_RS17260	0.88	+3.1
1,650,994	+		BBR_RS17260	0.90	-0.4
1,651,002	-				+1.7
1,651,039	-				-1.8
1,651,054	-				+1.5
1,651,054	-				-1.4
1,651,058	-				-2.1
1,651,058	-				-1.2
1,651,084	-				+1.7
1,651,084	-				+1.7
1,651,084	-				-1.5
1,651,092	+				-0.7
1,651,223	+		BBR_RS17265	0.11	+2.3
1,651,271	-		BBR_RS17265	0.14	+1.1
1,651,277	-		BBR_RS17265	0.14	+0.7
1,651,287	-		BBR_RS17265	0.15	-1.4
1,651,311	-		BBR_RS17265	0.17	+1.5
1,651,364	+		BBR_RS17265	0.20	-1.3
1,651,372	-		BBR_RS17265	0.20	+1.7
1,651,372	-		BBR_RS17265	0.20	+1.3
1,651,396	+		BBR_RS17265	0.22	+2.9
1,651,397	+		BBR_RS17265	0.22	+1.5
1,651,397	-		BBR_RS17265	0.22	-0.6
1,651,440	-		BBR_RS17265	0.25	-1.6
1,651,447	-		BBR_RS17265	0.25	+0.1
1,651,464	-		BBR_RS17265	0.26	+1.2
1,651,464	-		BBR_RS17265	0.26	+1.7
1,651,475	-		BBR_RS17265	0.27	+1.6
1,651,475	-		BBR_RS17265	0.27	+0.6
1,651,485	-		BBR_RS17265	0.28	-1.1
1,651,490	-		BBR_RS17265	0.28	+1.1
1,651,492	+		BBR_RS17265	0.28	-1.5
1,651,502	-		BBR_RS17265	0.29	-0.5
1,651,530	-		BBR_RS17265	0.31	-0.4
1,651,553	-		BBR_RS17265	0.32	-0.7
1,651,560	-		BBR_RS17265	0.32	-1.8
1,651,583	-		BBR_RS17265	0.34	+0.6
1,651,595	+		BBR_RS17265	0.35	+0.9
1,651,595	+		BBR_RS17265	0.35	-0.7
1,651,603	-		BBR_RS17265	0.35	-2.0
1,651,603	-		BBR_RS17265	0.35	-0.6
1,651,634	+		BBR_RS17265	0.37	-0.3
1,651,690	-		BBR_RS17265	0.41	-2.3
1,651,690	-		BBR_RS17265	0.41	+0.7
1,651,713	-		BBR_RS17265	0.42	+0.2
1,651,713	-		BBR_RS17265	0.42	-0.6
1,651,722	+		BBR_RS17265	0.43	+0.4
1,651,783	+		BBR_RS17265	0.47	+1.9
1,651,836	+		BBR_RS17265	0.50	+0.0
1,651,838	-		BBR_RS17265	0.50	-0.7
1,651,868	-		BBR_RS17265	0.52	+0.7
1,651,960	+		BBR_RS17265	0.58	+1.0
1,651,969	-		BBR_RS17265	0.59	-2.4
1,651,969	-		BBR_RS17265	0.59	-0.9
1,651,978	-		BBR_RS17265	0.59	+1.1
1,651,978	-		BBR_RS17265	0.59	+2.2
1,652,056	+		BBR_RS17265	0.64	+1.6
1,652,084	+		BBR_RS17265	0.66	-1.1
1,652,092	-		BBR_RS17265	0.67	+0.4
1,652,150	+		BBR_RS17265	0.70	-1.2
1,652,193	+		BBR_RS17265	0.73	+1.7
1,652,201	-		BBR_RS17265	0.74	-2.2
1,652,295	-		BBR_RS17265	0.80	-1.5
1,652,295	-		BBR_RS17265	0.80	-2.0
1,652,295	-		BBR_RS17265	0.80	-1.3
1,652,299	+		BBR_RS17265	0.80	-0.5
1,652,299	+		BBR_RS17265	0.80	-0.7
1,652,304	+		BBR_RS17265	0.80	+0.1
1,652,307	-		BBR_RS17265	0.80	+0.5
1,652,307	-		BBR_RS17265	0.80	+1.5
1,652,307	-		BBR_RS17265	0.80	-0.1
1,652,313	+		BBR_RS17265	0.81	-0.8
1,652,356	+		BBR_RS17265	0.84	+1.4
1,652,356	+		BBR_RS17265	0.84	-1.1
1,652,364	-		BBR_RS17265	0.84	-1.0
1,652,364	-		BBR_RS17265	0.84	+0.2
1,652,371	+		BBR_RS17265	0.85	+2.0
1,652,423	+		BBR_RS17265	0.88	-1.3
1,652,456	+				-0.1
1,652,487	+				-1.7
1,652,503	-				+2.2
1,652,503	-				-0.9
1,652,504	-				+0.2
1,652,510	-				+2.0
1,652,526	-				+1.7
1,652,526	-				-1.2
1,652,537	-				+0.8
1,652,543	-				+1.9
1,652,570	+				+1.2
1,652,608	-				-0.6
1,652,612	-				-2.2
1,652,621	-				+0.8
1,652,633	-				-0.5
1,652,651	+				-1.6
1,652,667	+				+1.1
1,652,675	-				+3.0
1,652,698	-				+1.5
1,652,698	-				+1.0
1,652,723	+				+2.9
1,652,724	-				+2.0
1,652,731	-				+0.1
1,652,731	-				+0.9
1,652,742	+				-0.8
1,652,747	+				+1.3
1,652,788	-				+0.4
1,652,793	-				+0.0
1,652,811	-				+1.8
1,652,813	+				-0.9
1,652,833	+		BBR_RS17270	0.10	+2.6
1,652,833	+		BBR_RS17270	0.10	-1.6
1,652,833	-		BBR_RS17270	0.10	-0.3
1,652,882	-		BBR_RS17270	0.17	+0.6
1,652,882	-		BBR_RS17270	0.17	+1.3
1,652,889	-		BBR_RS17270	0.18	+0.6
1,652,895	+		BBR_RS17270	0.18	+1.0
1,652,900	+		BBR_RS17270	0.19	-1.4
1,652,900	+		BBR_RS17270	0.19	+0.2
1,652,905	+		BBR_RS17270	0.20	+3.7
1,652,908	-		BBR_RS17270	0.20	-0.2
1,652,913	-		BBR_RS17270	0.21	-1.2
1,652,919	-		BBR_RS17270	0.21	-1.8
1,652,935	-		BBR_RS17270	0.24	+1.1
1,652,947	+		BBR_RS17270	0.25	-1.4
1,652,953	+		BBR_RS17270	0.26	-1.1
1,653,031	-		BBR_RS17270	0.36	-1.7
1,653,045	+		BBR_RS17270	0.38	+0.1
1,653,073	+		BBR_RS17270	0.42	-1.2
1,653,099	-		BBR_RS17270	0.45	+1.3
1,653,101	-		BBR_RS17270	0.45	+0.7
1,653,101	-		BBR_RS17270	0.45	+1.8
1,653,132	+		BBR_RS17270	0.49	+0.7
1,653,132	+		BBR_RS17270	0.49	+2.3
1,653,132	+		BBR_RS17270	0.49	+0.8
1,653,140	-		BBR_RS17270	0.50	+0.4
1,653,140	-		BBR_RS17270	0.50	+2.3
1,653,140	-		BBR_RS17270	0.50	-1.8
1,653,148	+		BBR_RS17270	0.51	+0.6
1,653,167	-		BBR_RS17270	0.54	-0.8
1,653,170	+		BBR_RS17270	0.54	+1.1
1,653,178	-		BBR_RS17270	0.55	+1.1
1,653,239	+		BBR_RS17270	0.63	+1.1
1,653,250	+		BBR_RS17270	0.65	-1.0
1,653,250	+		BBR_RS17270	0.65	-0.6
1,653,258	-		BBR_RS17270	0.66	+2.0
1,653,258	-		BBR_RS17270	0.66	+0.7
1,653,258	-		BBR_RS17270	0.66	+1.6
1,653,258	-		BBR_RS17270	0.66	+1.9
1,653,258	-		BBR_RS17270	0.66	-1.5
1,653,258	-		BBR_RS17270	0.66	-0.7
1,653,260	+		BBR_RS17270	0.66	+2.0
1,653,260	+		BBR_RS17270	0.66	+1.0
1,653,263	-		BBR_RS17270	0.66	+1.0
1,653,268	-		BBR_RS17270	0.67	+0.5
1,653,268	-		BBR_RS17270	0.67	+0.1
1,653,295	+		BBR_RS17270	0.70	+0.6
1,653,295	+		BBR_RS17270	0.70	+1.0
1,653,295	+		BBR_RS17270	0.70	+1.9
1,653,298	-		BBR_RS17270	0.71	+1.9
1,653,336	-		BBR_RS17270	0.76	+0.1
1,653,342	-		BBR_RS17270	0.77	+0.4
1,653,373	+		BBR_RS17270	0.81	+1.4
1,653,394	-		BBR_RS17270	0.83	-0.9
1,653,425	-		BBR_RS17270	0.87	+0.5
1,653,474	-				+0.4
1,653,529	-				+1.8
1,653,550	-				-0.5
1,653,550	-				-0.1
1,653,577	-				-0.3