Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14825

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
1,100,195	+		BBR_RS14820	0.39	-1.2
1,100,208	+		BBR_RS14820	0.40	-0.3
1,100,213	+		BBR_RS14820	0.40	+1.1
1,100,213	+		BBR_RS14820	0.40	-0.8
1,100,239	+		BBR_RS14820	0.42	+1.1
1,100,244	+		BBR_RS14820	0.42	+2.1
1,100,252	-		BBR_RS14820	0.43	+1.5
1,100,252	-		BBR_RS14820	0.43	-1.0
1,100,252	-		BBR_RS14820	0.43	-0.1
1,100,271	+		BBR_RS14820	0.44	-0.6
1,100,340	+		BBR_RS14820	0.49	-1.6
1,100,348	-		BBR_RS14820	0.49	+1.1
1,100,353	-		BBR_RS14820	0.50	+2.1
1,100,375	-		BBR_RS14820	0.51	+1.8
1,100,380	-		BBR_RS14820	0.52	-2.6
1,100,380	-		BBR_RS14820	0.52	+1.0
1,100,432	+		BBR_RS14820	0.55	-0.4
1,100,441	+		BBR_RS14820	0.56	+0.8
1,100,454	-		BBR_RS14820	0.57	-1.2
1,100,519	-		BBR_RS14820	0.61	+0.1
1,100,537	-		BBR_RS14820	0.63	-0.3
1,100,543	+		BBR_RS14820	0.63	+2.4
1,100,573	+		BBR_RS14820	0.65	-1.0
1,100,588	+		BBR_RS14820	0.66	+1.6
1,100,663	-		BBR_RS14820	0.71	+1.4
1,100,668	+		BBR_RS14820	0.72	+1.8
1,100,719	-		BBR_RS14820	0.75	-0.1
1,100,726	+		BBR_RS14820	0.76	+0.3
1,100,726	+		BBR_RS14820	0.76	-0.1
1,100,777	+		BBR_RS14820	0.79	+1.7
1,100,777	+		BBR_RS14820	0.79	+1.8
1,100,785	-		BBR_RS14820	0.80	-0.3
1,100,824	-		BBR_RS14820	0.83	+0.8
1,100,838	+		BBR_RS14820	0.84	-2.0
1,100,860	+		BBR_RS14820	0.85	-0.7
1,100,892	+		BBR_RS14820	0.88	+0.2
1,100,934	-				+0.0
1,100,955	-				+1.7
1,101,097	+				+0.2
1,101,121	+				+1.1
1,101,129	-				-2.3
1,101,140	-				+0.4
1,101,142	+				+0.6
1,101,150	-				+0.5
1,101,150	-				-1.6
1,101,197	-				-1.4
1,101,255	-				-0.7
1,101,255	-				+1.4
1,101,256	-				+0.5
1,101,260	+				+0.6
1,101,260	+				+1.8
1,101,269	-				+0.6
1,101,327	+		BBR_RS14825	0.11	+0.2
1,101,336	-		BBR_RS14825	0.12	+0.2
1,101,336	-		BBR_RS14825	0.12	+0.6
1,101,404	-		BBR_RS14825	0.16	+0.9
1,101,456	+		BBR_RS14825	0.19	-0.6
1,101,497	-		BBR_RS14825	0.22	-1.6
1,101,534	-		BBR_RS14825	0.25	+0.4
1,101,539	-		BBR_RS14825	0.25	+1.0
1,101,574	-		BBR_RS14825	0.27	-1.5
1,101,574	-		BBR_RS14825	0.27	-1.6
1,101,613	+		BBR_RS14825	0.30	+0.7
1,101,621	-		BBR_RS14825	0.30	-1.5
1,101,621	-		BBR_RS14825	0.30	+0.5
1,101,714	-		BBR_RS14825	0.36	+1.9
1,101,714	-		BBR_RS14825	0.36	-1.6
1,101,714	-		BBR_RS14825	0.36	+0.1
1,101,760	+		BBR_RS14825	0.39	-1.0
1,101,822	-		BBR_RS14825	0.43	-0.1
1,101,845	+		BBR_RS14825	0.45	-1.6
1,101,845	+		BBR_RS14825	0.45	-2.0
1,101,882	+		BBR_RS14825	0.47	-2.8
1,101,882	+		BBR_RS14825	0.47	+2.5
1,101,892	+		BBR_RS14825	0.48	-0.7
1,101,892	+		BBR_RS14825	0.48	+0.9
1,101,902	+		BBR_RS14825	0.49	+0.9
1,101,965	+		BBR_RS14825	0.53	+1.7
1,101,967	+		BBR_RS14825	0.53	+0.4
1,101,968	+		BBR_RS14825	0.53	+0.7
1,102,021	+		BBR_RS14825	0.56	-0.4
1,102,024	-		BBR_RS14825	0.57	+1.5
1,102,024	-		BBR_RS14825	0.57	+0.3
1,102,109	-		BBR_RS14825	0.62	+0.9
1,102,109	-		BBR_RS14825	0.62	+1.6
1,102,130	+		BBR_RS14825	0.64	+0.2
1,102,147	+		BBR_RS14825	0.65	+1.6
1,102,210	+		BBR_RS14825	0.69	+0.1
1,102,210	+		BBR_RS14825	0.69	+1.4
1,102,214	-		BBR_RS14825	0.69	+1.6
1,102,243	+		BBR_RS14825	0.71	-0.0
1,102,285	+		BBR_RS14825	0.74	+0.2
1,102,307	+		BBR_RS14825	0.75	+1.3
1,102,519	-		BBR_RS14825	0.89	-0.4
1,102,527	+		BBR_RS14825	0.90	-0.8
1,102,529	-		BBR_RS14825	0.90	+1.0
1,102,529	-		BBR_RS14825	0.90	-0.9
1,102,588	+				+1.2
1,102,602	-				+0.4
1,102,643	+				-0.3
1,102,656	+				-1.3
1,102,656	+				+0.4
1,102,709	-				-0.8
1,102,756	+				-1.4
1,102,766	+				-1.9
1,102,856	+				-0.3
1,102,947	-		BBR_RS14830	0.10	-1.1
1,102,947	-		BBR_RS14830	0.10	+0.0
1,102,947	-		BBR_RS14830	0.10	-1.6
1,102,961	+		BBR_RS14830	0.11	+0.8
1,102,962	+		BBR_RS14830	0.11	+0.2
1,102,970	-		BBR_RS14830	0.12	-0.4
1,103,036	-		BBR_RS14830	0.17	+1.5
1,103,036	-		BBR_RS14830	0.17	-1.0
1,103,091	+		BBR_RS14830	0.21	-0.0
1,103,093	+		BBR_RS14830	0.21	-1.3
1,103,096	+		BBR_RS14830	0.21	-1.8
1,103,099	-		BBR_RS14830	0.22	+1.1
1,103,125	-		BBR_RS14830	0.24	-2.5
1,103,150	+		BBR_RS14830	0.25	+0.2
1,103,150	+		BBR_RS14830	0.25	+0.2
1,103,158	-		BBR_RS14830	0.26	-0.5
1,103,160	+		BBR_RS14830	0.26	-2.2
1,103,160	+		BBR_RS14830	0.26	+0.9
1,103,168	-		BBR_RS14830	0.27	-0.8
1,103,191	+		BBR_RS14830	0.28	-1.0
1,103,191	+		BBR_RS14830	0.28	-0.1
1,103,206	+		BBR_RS14830	0.30	-0.3
1,103,228	-		BBR_RS14830	0.31	-1.5
1,103,244	-		BBR_RS14830	0.32	+1.0
1,103,271	+		BBR_RS14830	0.34	-2.7
1,103,290	-		BBR_RS14830	0.36	+0.3
1,103,299	+		BBR_RS14830	0.37	+1.1
1,103,307	-		BBR_RS14830	0.37	-2.0
1,103,381	+		BBR_RS14830	0.43	+0.1
1,103,381	+		BBR_RS14830	0.43	-1.0
1,103,384	-		BBR_RS14830	0.43	-1.8
1,103,399	-		BBR_RS14830	0.44	-0.1
1,103,418	+		BBR_RS14830	0.45	+0.8
1,103,426	-		BBR_RS14830	0.46	-2.1
1,103,426	-		BBR_RS14830	0.46	-0.7
1,103,449	+		BBR_RS14830	0.48	-2.0
1,103,470	+		BBR_RS14830	0.49	+0.1
1,103,575	+		BBR_RS14830	0.57	+1.1
1,103,583	-		BBR_RS14830	0.58	-0.1
1,103,624	+		BBR_RS14830	0.61	+0.1