Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14405 and BBR_RS20830 are separated by 37 nucleotides BBR_RS20830 and BBR_RS14410 are separated by 173 nucleotides BBR_RS14410 and BBR_RS14415 are separated by 183 nucleotides
BBR_RS14405: BBR_RS14405 - glutamine-hydrolyzing GMP synthase, at 1,005,796 to 1,007,358
_RS14405
BBR_RS20830: BBR_RS20830 - hypothetical protein, at 1,007,396 to 1,007,632
_RS20830
BBR_RS14410: BBR_RS14410 - phosphoketolase, at 1,007,806 to 1,010,283
_RS14410
BBR_RS14415: BBR_RS14415 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 1,010,467 to 1,011,849
_RS14415
Position (kb) 1007
1008
1009
1010
1011 Strain fitness (log2 ratio) -1
0
1 at 1007.401 kb on - strand at 1007.433 kb on + strand, within BBR_RS20830 at 1007.532 kb on + strand, within BBR_RS20830 at 1007.576 kb on + strand, within BBR_RS20830 at 1010.287 kb on + strand at 1010.403 kb on + strand at 1010.469 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 1,007,401 - -1.1 1,007,433 + BBR_RS20830 0.16 +0.6 1,007,532 + BBR_RS20830 0.57 -1.5 1,007,576 + BBR_RS20830 0.76 -0.7 1,010,287 + -1.1 1,010,403 + -0.3 1,010,469 + -0.4
Or see this region's nucleotide sequence