Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13645

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13635 and BBR_RS13640 overlap by 1 nucleotidesBBR_RS13640 and BBR_RS13645 are separated by 36 nucleotidesBBR_RS13645 and BBR_RS13650 are separated by 33 nucleotidesBBR_RS13650 and BBR_RS13655 are separated by 124 nucleotides BBR_RS13635: BBR_RS13635 - carbamoyl-phosphate synthase large subunit, at 831,142 to 834,525 _RS13635 BBR_RS13640: BBR_RS13640 - orotidine-5'-phosphate decarboxylase, at 834,525 to 835,445 _RS13640 BBR_RS13645: BBR_RS13645 - guanylate kinase, at 835,482 to 836,072 _RS13645 BBR_RS13650: BBR_RS13650 - 3'-5' exonuclease, at 836,106 to 836,813 _RS13650 BBR_RS13655: BBR_RS13655 - hypothetical protein, at 836,938 to 837,369 _RS13655 Position (kb) 835 836 837Strain fitness (log2 ratio) -2 -1 0 1 2at 834.519 kb on + strandat 834.657 kb on + strand, within BBR_RS13640at 834.679 kb on + strand, within BBR_RS13640at 834.679 kb on + strand, within BBR_RS13640at 834.679 kb on + strand, within BBR_RS13640at 834.786 kb on + strand, within BBR_RS13640at 834.800 kb on + strand, within BBR_RS13640at 834.800 kb on + strand, within BBR_RS13640at 834.800 kb on + strand, within BBR_RS13640at 834.813 kb on + strand, within BBR_RS13640at 834.815 kb on + strand, within BBR_RS13640at 834.822 kb on + strand, within BBR_RS13640at 834.834 kb on + strand, within BBR_RS13640at 834.893 kb on + strand, within BBR_RS13640at 834.893 kb on + strand, within BBR_RS13640at 835.021 kb on + strand, within BBR_RS13640at 835.036 kb on + strand, within BBR_RS13640at 835.121 kb on + strand, within BBR_RS13640at 835.141 kb on + strand, within BBR_RS13640at 835.156 kb on + strand, within BBR_RS13640at 835.174 kb on + strand, within BBR_RS13640at 835.200 kb on + strand, within BBR_RS13640at 835.281 kb on + strand, within BBR_RS13640at 835.448 kb on - strandat 835.493 kb on + strandat 836.057 kb on + strandat 836.109 kb on + strandat 836.117 kb on - strandat 836.130 kb on + strandat 836.148 kb on + strandat 836.148 kb on + strandat 836.156 kb on - strandat 836.156 kb on - strandat 836.165 kb on + strandat 836.165 kb on + strandat 836.243 kb on - strand, within BBR_RS13650at 836.270 kb on - strand, within BBR_RS13650at 836.272 kb on - strand, within BBR_RS13650at 836.276 kb on + strand, within BBR_RS13650at 836.324 kb on + strand, within BBR_RS13650at 836.324 kb on + strand, within BBR_RS13650at 836.339 kb on - strand, within BBR_RS13650at 836.409 kb on - strand, within BBR_RS13650at 836.466 kb on - strand, within BBR_RS13650at 836.521 kb on + strand, within BBR_RS13650at 836.522 kb on + strand, within BBR_RS13650at 836.522 kb on + strand, within BBR_RS13650at 836.639 kb on + strand, within BBR_RS13650at 836.661 kb on - strand, within BBR_RS13650at 836.710 kb on + strand, within BBR_RS13650at 836.869 kb on - strandat 836.898 kb on + strandat 836.898 kb on + strandat 836.898 kb on + strandat 836.941 kb on + strandat 836.951 kb on - strandat 836.975 kb on - strandat 837.002 kb on - strand, within BBR_RS13655at 837.045 kb on + strand, within BBR_RS13655at 837.053 kb on - strand, within BBR_RS13655at 837.053 kb on - strand, within BBR_RS13655

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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834,519 + -0.9
834,657 + BBR_RS13640 0.14 +0.8
834,679 + BBR_RS13640 0.17 +0.2
834,679 + BBR_RS13640 0.17 +0.2
834,679 + BBR_RS13640 0.17 +0.6
834,786 + BBR_RS13640 0.28 -0.4
834,800 + BBR_RS13640 0.30 +0.3
834,800 + BBR_RS13640 0.30 +0.0
834,800 + BBR_RS13640 0.30 -0.3
834,813 + BBR_RS13640 0.31 -0.2
834,815 + BBR_RS13640 0.31 -0.9
834,822 + BBR_RS13640 0.32 -0.4
834,834 + BBR_RS13640 0.34 -0.7
834,893 + BBR_RS13640 0.40 +0.0
834,893 + BBR_RS13640 0.40 +2.5
835,021 + BBR_RS13640 0.54 +1.3
835,036 + BBR_RS13640 0.55 -0.2
835,121 + BBR_RS13640 0.65 +0.4
835,141 + BBR_RS13640 0.67 +0.1
835,156 + BBR_RS13640 0.69 +1.3
835,174 + BBR_RS13640 0.70 -0.3
835,200 + BBR_RS13640 0.73 -1.0
835,281 + BBR_RS13640 0.82 +1.1
835,448 - +2.5
835,493 + -1.6
836,057 + +1.1
836,109 + -1.0
836,117 - +1.3
836,130 + +1.4
836,148 + -0.8
836,148 + +1.5
836,156 - -0.6
836,156 - +1.1
836,165 + -1.0
836,165 + -0.2
836,243 - BBR_RS13650 0.19 -0.2
836,270 - BBR_RS13650 0.23 +1.3
836,272 - BBR_RS13650 0.23 +0.2
836,276 + BBR_RS13650 0.24 -0.3
836,324 + BBR_RS13650 0.31 +1.0
836,324 + BBR_RS13650 0.31 -1.5
836,339 - BBR_RS13650 0.33 -0.7
836,409 - BBR_RS13650 0.43 -0.2
836,466 - BBR_RS13650 0.51 +0.4
836,521 + BBR_RS13650 0.59 -0.7
836,522 + BBR_RS13650 0.59 +0.3
836,522 + BBR_RS13650 0.59 +0.6
836,639 + BBR_RS13650 0.75 +0.8
836,661 - BBR_RS13650 0.78 +0.2
836,710 + BBR_RS13650 0.85 +0.4
836,869 - -1.5
836,898 + -2.1
836,898 + +2.3
836,898 + -0.7
836,941 + +0.4
836,951 - +0.6
836,975 - -1.5
837,002 - BBR_RS13655 0.15 +2.2
837,045 + BBR_RS13655 0.25 -0.6
837,053 - BBR_RS13655 0.27 -0.8
837,053 - BBR_RS13655 0.27 -0.1

Or see this region's nucleotide sequence