Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13590

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13585 and BBR_RS13590 are separated by 31 nucleotidesBBR_RS13590 and BBR_RS13595 are separated by 379 nucleotides BBR_RS13585: BBR_RS13585 - transporter, at 818,642 to 819,712 _RS13585 BBR_RS13590: BBR_RS13590 - hypothetical protein, at 819,744 to 819,993 _RS13590 BBR_RS13595: BBR_RS13595 - glycosyl transferase, at 820,373 to 822,640 _RS13595 Position (kb) 819 820Strain fitness (log2 ratio) -2 -1 0 1 2 3at 818.757 kb on + strand, within BBR_RS13585at 818.762 kb on + strand, within BBR_RS13585at 818.770 kb on + strand, within BBR_RS13585at 818.770 kb on - strand, within BBR_RS13585at 818.823 kb on + strand, within BBR_RS13585at 818.889 kb on - strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 819.043 kb on - strand, within BBR_RS13585at 819.064 kb on + strand, within BBR_RS13585at 819.064 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.312 kb on + strand, within BBR_RS13585at 819.320 kb on - strand, within BBR_RS13585at 819.342 kb on - strand, within BBR_RS13585at 819.342 kb on - strand, within BBR_RS13585at 819.415 kb on + strand, within BBR_RS13585at 819.425 kb on - strand, within BBR_RS13585at 819.425 kb on - strand, within BBR_RS13585at 819.447 kb on + strand, within BBR_RS13585at 819.447 kb on + strand, within BBR_RS13585at 819.506 kb on + strand, within BBR_RS13585at 819.506 kb on + strand, within BBR_RS13585at 819.519 kb on - strand, within BBR_RS13585at 819.583 kb on + strand, within BBR_RS13585at 819.622 kb on + strandat 819.701 kb on + strandat 819.719 kb on + strandat 819.764 kb on + strandat 819.772 kb on - strand, within BBR_RS13590at 819.782 kb on - strand, within BBR_RS13590at 819.803 kb on + strand, within BBR_RS13590at 819.810 kb on - strand, within BBR_RS13590at 819.811 kb on - strand, within BBR_RS13590at 819.811 kb on - strand, within BBR_RS13590at 819.836 kb on - strand, within BBR_RS13590at 819.848 kb on - strand, within BBR_RS13590at 819.897 kb on + strand, within BBR_RS13590at 819.908 kb on + strand, within BBR_RS13590at 819.915 kb on - strand, within BBR_RS13590at 819.927 kb on - strand, within BBR_RS13590at 819.988 kb on + strandat 819.990 kb on + strandat 819.996 kb on - strandat 820.003 kb on + strandat 820.054 kb on - strandat 820.054 kb on - strandat 820.134 kb on + strandat 820.177 kb on + strandat 820.258 kb on + strandat 820.301 kb on + strandat 820.301 kb on + strandat 820.309 kb on - strandat 820.310 kb on + strandat 820.366 kb on - strandat 820.442 kb on + strandat 820.580 kb on + strandat 820.665 kb on + strand, within BBR_RS13595at 820.665 kb on + strand, within BBR_RS13595at 820.665 kb on + strand, within BBR_RS13595at 820.747 kb on + strand, within BBR_RS13595at 820.819 kb on + strand, within BBR_RS13595at 820.837 kb on - strand, within BBR_RS13595at 820.851 kb on + strand, within BBR_RS13595at 820.894 kb on + strand, within BBR_RS13595at 820.950 kb on + strand, within BBR_RS13595at 820.987 kb on - strand, within BBR_RS13595

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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818,757 + BBR_RS13585 0.11 +1.5
818,762 + BBR_RS13585 0.11 +0.0
818,770 + BBR_RS13585 0.12 +0.8
818,770 - BBR_RS13585 0.12 +1.4
818,823 + BBR_RS13585 0.17 -1.0
818,889 - BBR_RS13585 0.23 -1.7
818,920 + BBR_RS13585 0.26 +2.4
818,920 + BBR_RS13585 0.26 -0.5
818,920 + BBR_RS13585 0.26 +0.8
819,043 - BBR_RS13585 0.37 -1.5
819,064 + BBR_RS13585 0.39 +1.2
819,064 + BBR_RS13585 0.39 +1.8
819,078 + BBR_RS13585 0.41 +1.1
819,078 + BBR_RS13585 0.41 -0.9
819,078 + BBR_RS13585 0.41 +0.9
819,078 + BBR_RS13585 0.41 +2.0
819,078 + BBR_RS13585 0.41 +1.3
819,078 + BBR_RS13585 0.41 +0.2
819,078 + BBR_RS13585 0.41 +1.5
819,078 + BBR_RS13585 0.41 +0.3
819,078 + BBR_RS13585 0.41 -0.2
819,086 - BBR_RS13585 0.41 +0.5
819,086 - BBR_RS13585 0.41 +0.2
819,086 - BBR_RS13585 0.41 -0.1
819,312 + BBR_RS13585 0.63 +1.4
819,320 - BBR_RS13585 0.63 +1.5
819,342 - BBR_RS13585 0.65 +0.1
819,342 - BBR_RS13585 0.65 -0.0
819,415 + BBR_RS13585 0.72 -0.6
819,425 - BBR_RS13585 0.73 -1.5
819,425 - BBR_RS13585 0.73 -0.3
819,447 + BBR_RS13585 0.75 -0.9
819,447 + BBR_RS13585 0.75 +0.6
819,506 + BBR_RS13585 0.81 -0.3
819,506 + BBR_RS13585 0.81 +0.1
819,519 - BBR_RS13585 0.82 +0.0
819,583 + BBR_RS13585 0.88 -1.2
819,622 + +1.1
819,701 + -0.2
819,719 + +2.2
819,764 + +1.0
819,772 - BBR_RS13590 0.11 +1.5
819,782 - BBR_RS13590 0.15 -0.0
819,803 + BBR_RS13590 0.24 +0.6
819,810 - BBR_RS13590 0.26 -1.3
819,811 - BBR_RS13590 0.27 -0.6
819,811 - BBR_RS13590 0.27 -0.9
819,836 - BBR_RS13590 0.37 +2.0
819,848 - BBR_RS13590 0.42 +0.5
819,897 + BBR_RS13590 0.61 +3.1
819,908 + BBR_RS13590 0.66 -0.0
819,915 - BBR_RS13590 0.68 -1.6
819,927 - BBR_RS13590 0.73 -0.2
819,988 + -1.2
819,990 + -1.3
819,996 - +1.4
820,003 + +1.5
820,054 - -0.9
820,054 - -1.0
820,134 + -0.6
820,177 + -2.1
820,258 + +1.9
820,301 + -1.4
820,301 + -0.7
820,309 - +3.0
820,310 + -0.1
820,366 - +1.9
820,442 + +0.1
820,580 + -0.1
820,665 + BBR_RS13595 0.13 +0.5
820,665 + BBR_RS13595 0.13 -2.1
820,665 + BBR_RS13595 0.13 +1.2
820,747 + BBR_RS13595 0.16 +2.7
820,819 + BBR_RS13595 0.20 +1.4
820,837 - BBR_RS13595 0.20 +0.4
820,851 + BBR_RS13595 0.21 -1.1
820,894 + BBR_RS13595 0.23 +1.7
820,950 + BBR_RS13595 0.25 +1.7
820,987 - BBR_RS13595 0.27 +0.8

Or see this region's nucleotide sequence