Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13310 and BBR_RS13315 overlap by 4 nucleotides BBR_RS13315 and BBR_RS13320 are separated by 5 nucleotides BBR_RS13320 and BBR_RS13325 overlap by 9 nucleotides BBR_RS13325 and BBR_RS13330 are separated by 77 nucleotides BBR_RS13330 and BBR_RS13335 are separated by 348 nucleotides
BBR_RS13310: BBR_RS13310 - hypothetical protein, at 760,756 to 761,466
_RS13310
BBR_RS13315: BBR_RS13315 - hypothetical protein, at 761,463 to 761,882
_RS13315
BBR_RS13320: BBR_RS13320 - ABC transporter ATP-binding protein, at 761,888 to 762,343
_RS13320
BBR_RS13325: BBR_RS13325 - hypothetical protein, at 762,335 to 762,637
_RS13325
BBR_RS13330: BBR_RS13330 - hypothetical protein, at 762,715 to 763,062
_RS13330
BBR_RS13335: BBR_RS13335 - transcriptional repressor, at 763,411 to 763,911
_RS13335
Position (kb) 762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 761.336 kb on - strand, within BBR_RS13310 at 761.338 kb on - strand, within BBR_RS13310 at 761.363 kb on + strand, within BBR_RS13310 at 761.377 kb on + strand, within BBR_RS13310 at 761.421 kb on + strand at 761.453 kb on + strand at 761.458 kb on + strand at 761.459 kb on + strand at 761.461 kb on - strand at 761.468 kb on + strand at 761.509 kb on + strand, within BBR_RS13315 at 761.522 kb on - strand, within BBR_RS13315 at 761.527 kb on - strand, within BBR_RS13315 at 761.527 kb on - strand, within BBR_RS13315 at 761.532 kb on + strand, within BBR_RS13315 at 761.551 kb on + strand, within BBR_RS13315 at 761.569 kb on - strand, within BBR_RS13315 at 761.569 kb on - strand, within BBR_RS13315 at 761.668 kb on + strand, within BBR_RS13315 at 761.670 kb on - strand, within BBR_RS13315 at 761.674 kb on + strand, within BBR_RS13315 at 761.702 kb on - strand, within BBR_RS13315 at 761.702 kb on - strand, within BBR_RS13315 at 761.745 kb on + strand, within BBR_RS13315 at 761.768 kb on + strand, within BBR_RS13315 at 761.791 kb on - strand, within BBR_RS13315 at 761.791 kb on - strand, within BBR_RS13315 at 761.791 kb on - strand, within BBR_RS13315 at 761.793 kb on - strand, within BBR_RS13315 at 761.793 kb on - strand, within BBR_RS13315 at 761.822 kb on - strand, within BBR_RS13315 at 761.839 kb on + strand, within BBR_RS13315 at 761.845 kb on + strand at 761.847 kb on - strand at 761.847 kb on - strand at 761.859 kb on + strand at 761.892 kb on - strand at 761.901 kb on + strand at 762.018 kb on + strand, within BBR_RS13320 at 762.036 kb on + strand, within BBR_RS13320 at 762.095 kb on - strand, within BBR_RS13320 at 762.168 kb on + strand, within BBR_RS13320 at 762.176 kb on - strand, within BBR_RS13320 at 762.180 kb on + strand, within BBR_RS13320 at 762.200 kb on + strand, within BBR_RS13320 at 762.202 kb on + strand, within BBR_RS13320 at 762.210 kb on - strand, within BBR_RS13320 at 762.210 kb on - strand, within BBR_RS13320 at 762.215 kb on - strand, within BBR_RS13320 at 762.273 kb on + strand, within BBR_RS13320 at 762.326 kb on + strand at 762.337 kb on + strand at 762.371 kb on + strand, within BBR_RS13325 at 762.371 kb on + strand, within BBR_RS13325 at 762.379 kb on - strand, within BBR_RS13325 at 762.398 kb on - strand, within BBR_RS13325 at 762.411 kb on - strand, within BBR_RS13325 at 762.412 kb on + strand, within BBR_RS13325 at 762.412 kb on + strand, within BBR_RS13325 at 762.420 kb on - strand, within BBR_RS13325 at 762.470 kb on - strand, within BBR_RS13325 at 762.475 kb on - strand, within BBR_RS13325 at 762.514 kb on + strand, within BBR_RS13325 at 762.671 kb on + strand at 762.672 kb on + strand at 762.680 kb on + strand at 762.726 kb on + strand at 762.731 kb on + strand at 762.739 kb on - strand at 762.760 kb on - strand, within BBR_RS13330 at 762.811 kb on + strand, within BBR_RS13330 at 762.821 kb on + strand, within BBR_RS13330 at 762.846 kb on + strand, within BBR_RS13330 at 762.851 kb on + strand, within BBR_RS13330 at 762.865 kb on - strand, within BBR_RS13330 at 762.872 kb on + strand, within BBR_RS13330 at 762.880 kb on - strand, within BBR_RS13330 at 762.907 kb on - strand, within BBR_RS13330 at 762.960 kb on - strand, within BBR_RS13330 at 762.974 kb on + strand, within BBR_RS13330 at 763.007 kb on - strand, within BBR_RS13330 at 763.049 kb on - strand at 763.105 kb on - strand at 763.105 kb on - strand at 763.222 kb on + strand at 763.234 kb on - strand at 763.236 kb on - strand at 763.236 kb on - strand at 763.236 kb on - strand at 763.321 kb on + strand at 763.334 kb on + strand at 763.394 kb on - strand at 763.403 kb on - strand at 763.403 kb on - strand at 763.405 kb on + strand at 763.444 kb on - strand at 763.450 kb on + strand at 763.457 kb on + strand at 763.482 kb on - strand, within BBR_RS13335 at 763.525 kb on - strand, within BBR_RS13335 at 763.559 kb on + strand, within BBR_RS13335 at 763.575 kb on - strand, within BBR_RS13335 at 763.576 kb on - strand, within BBR_RS13335
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 761,336 - BBR_RS13310 0.82 -0.8 761,338 - BBR_RS13310 0.82 +0.2 761,363 + BBR_RS13310 0.85 -1.1 761,377 + BBR_RS13310 0.87 +0.2 761,421 + +0.9 761,453 + +1.3 761,458 + -0.9 761,459 + -0.7 761,461 - -0.6 761,468 + -0.4 761,509 + BBR_RS13315 0.11 -2.1 761,522 - BBR_RS13315 0.14 +1.6 761,527 - BBR_RS13315 0.15 -2.4 761,527 - BBR_RS13315 0.15 +1.0 761,532 + BBR_RS13315 0.16 +1.3 761,551 + BBR_RS13315 0.21 -0.6 761,569 - BBR_RS13315 0.25 -1.2 761,569 - BBR_RS13315 0.25 -0.8 761,668 + BBR_RS13315 0.49 -0.0 761,670 - BBR_RS13315 0.49 +1.3 761,674 + BBR_RS13315 0.50 -2.4 761,702 - BBR_RS13315 0.57 -1.4 761,702 - BBR_RS13315 0.57 -1.2 761,745 + BBR_RS13315 0.67 +1.6 761,768 + BBR_RS13315 0.73 +0.4 761,791 - BBR_RS13315 0.78 +0.6 761,791 - BBR_RS13315 0.78 -0.5 761,791 - BBR_RS13315 0.78 -1.1 761,793 - BBR_RS13315 0.79 -0.1 761,793 - BBR_RS13315 0.79 +1.8 761,822 - BBR_RS13315 0.85 -2.2 761,839 + BBR_RS13315 0.90 -0.0 761,845 + +1.4 761,847 - +0.7 761,847 - +0.2 761,859 + +0.0 761,892 - -0.1 761,901 + -2.8 762,018 + BBR_RS13320 0.29 -0.7 762,036 + BBR_RS13320 0.32 -0.2 762,095 - BBR_RS13320 0.45 -0.8 762,168 + BBR_RS13320 0.61 -0.0 762,176 - BBR_RS13320 0.63 -2.0 762,180 + BBR_RS13320 0.64 +1.6 762,200 + BBR_RS13320 0.68 -0.5 762,202 + BBR_RS13320 0.69 -1.1 762,210 - BBR_RS13320 0.71 -0.4 762,210 - BBR_RS13320 0.71 -0.3 762,215 - BBR_RS13320 0.72 -1.2 762,273 + BBR_RS13320 0.84 -1.6 762,326 + +0.1 762,337 + -0.6 762,371 + BBR_RS13325 0.12 -1.3 762,371 + BBR_RS13325 0.12 -0.6 762,379 - BBR_RS13325 0.15 +0.5 762,398 - BBR_RS13325 0.21 -2.7 762,411 - BBR_RS13325 0.25 -1.4 762,412 + BBR_RS13325 0.25 +0.8 762,412 + BBR_RS13325 0.25 -1.5 762,420 - BBR_RS13325 0.28 +0.2 762,470 - BBR_RS13325 0.45 +1.4 762,475 - BBR_RS13325 0.46 +1.0 762,514 + BBR_RS13325 0.59 +0.1 762,671 + -0.9 762,672 + -2.0 762,680 + +0.1 762,726 + +1.2 762,731 + +3.5 762,739 - -1.5 762,760 - BBR_RS13330 0.13 -0.2 762,811 + BBR_RS13330 0.28 +0.2 762,821 + BBR_RS13330 0.30 +2.2 762,846 + BBR_RS13330 0.38 +1.1 762,851 + BBR_RS13330 0.39 +0.9 762,865 - BBR_RS13330 0.43 -1.0 762,872 + BBR_RS13330 0.45 -1.6 762,880 - BBR_RS13330 0.47 +0.8 762,907 - BBR_RS13330 0.55 -0.8 762,960 - BBR_RS13330 0.70 -0.2 762,974 + BBR_RS13330 0.74 -1.0 763,007 - BBR_RS13330 0.84 -0.8 763,049 - +0.6 763,105 - +1.8 763,105 - -0.2 763,222 + -1.2 763,234 - +0.5 763,236 - +0.5 763,236 - +0.2 763,236 - +2.0 763,321 + +0.8 763,334 + +0.3 763,394 - +1.4 763,403 - -0.4 763,403 - +2.3 763,405 + +0.2 763,444 - -1.3 763,450 + +0.2 763,457 + +0.2 763,482 - BBR_RS13335 0.14 +2.0 763,525 - BBR_RS13335 0.23 -0.6 763,559 + BBR_RS13335 0.30 +0.3 763,575 - BBR_RS13335 0.33 -2.7 763,576 - BBR_RS13335 0.33 +2.1
Or see this region's nucleotide sequence