Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12275 and BBR_RS12280 are separated by 627 nucleotides BBR_RS12280 and BBR_RS12285 are separated by 265 nucleotides
BBR_RS12275: BBR_RS12275 - DUF2207 domain-containing protein, at 504,710 to 506,185
_RS12275
BBR_RS12280: BBR_RS12280 - aldo/keto reductase, at 506,813 to 507,676
_RS12280
BBR_RS12285: BBR_RS12285 - nucleoside hydrolase, at 507,942 to 508,997
_RS12285
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 505.847 kb on - strand, within BBR_RS12275 at 505.853 kb on + strand, within BBR_RS12275 at 505.853 kb on + strand, within BBR_RS12275 at 505.861 kb on + strand, within BBR_RS12275 at 505.861 kb on - strand, within BBR_RS12275 at 505.861 kb on - strand, within BBR_RS12275 at 505.869 kb on - strand, within BBR_RS12275 at 505.869 kb on - strand, within BBR_RS12275 at 505.877 kb on - strand, within BBR_RS12275 at 505.877 kb on - strand, within BBR_RS12275 at 505.940 kb on - strand, within BBR_RS12275 at 505.990 kb on - strand, within BBR_RS12275 at 505.997 kb on - strand, within BBR_RS12275 at 506.003 kb on + strand, within BBR_RS12275 at 506.004 kb on + strand, within BBR_RS12275 at 506.007 kb on - strand, within BBR_RS12275 at 506.025 kb on + strand, within BBR_RS12275 at 506.054 kb on + strand at 506.062 kb on - strand at 506.131 kb on - strand at 506.173 kb on - strand at 506.188 kb on - strand at 506.201 kb on - strand at 506.212 kb on + strand at 506.219 kb on + strand at 506.241 kb on + strand at 506.243 kb on - strand at 506.260 kb on - strand at 506.265 kb on + strand at 506.294 kb on + strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.337 kb on - strand at 506.352 kb on + strand at 506.360 kb on - strand at 506.360 kb on - strand at 506.379 kb on + strand at 506.379 kb on + strand at 506.379 kb on + strand at 506.379 kb on + strand at 506.385 kb on - strand at 506.386 kb on + strand at 506.387 kb on - strand at 506.387 kb on - strand at 506.389 kb on + strand at 506.394 kb on + strand at 506.397 kb on - strand at 506.397 kb on - strand at 506.399 kb on + strand at 506.399 kb on + strand at 506.399 kb on + strand at 506.407 kb on - strand at 506.437 kb on + strand at 506.451 kb on + strand at 506.459 kb on - strand at 506.462 kb on + strand at 506.462 kb on + strand at 506.464 kb on + strand at 506.482 kb on - strand at 506.482 kb on - strand at 506.503 kb on + strand at 506.534 kb on + strand at 506.537 kb on + strand at 506.542 kb on + strand at 506.543 kb on + strand at 506.543 kb on + strand at 506.550 kb on - strand at 506.554 kb on + strand at 506.554 kb on + strand at 506.566 kb on + strand at 506.587 kb on - strand at 506.589 kb on + strand at 506.589 kb on + strand at 506.589 kb on + strand at 506.589 kb on + strand at 506.597 kb on - strand at 506.610 kb on - strand at 506.610 kb on - strand at 506.623 kb on - strand at 506.630 kb on - strand at 506.641 kb on - strand at 506.682 kb on - strand at 506.698 kb on - strand at 506.699 kb on - strand at 506.709 kb on + strand at 506.717 kb on - strand at 506.754 kb on + strand at 506.768 kb on + strand at 506.926 kb on - strand, within BBR_RS12280 at 506.969 kb on + strand, within BBR_RS12280 at 506.969 kb on + strand, within BBR_RS12280 at 506.969 kb on + strand, within BBR_RS12280 at 506.977 kb on - strand, within BBR_RS12280 at 506.977 kb on - strand, within BBR_RS12280 at 507.011 kb on - strand, within BBR_RS12280 at 507.011 kb on - strand, within BBR_RS12280 at 507.034 kb on + strand, within BBR_RS12280 at 507.049 kb on - strand, within BBR_RS12280 at 507.050 kb on + strand, within BBR_RS12280 at 507.064 kb on - strand, within BBR_RS12280 at 507.067 kb on + strand, within BBR_RS12280 at 507.074 kb on - strand, within BBR_RS12280 at 507.108 kb on - strand, within BBR_RS12280 at 507.115 kb on + strand, within BBR_RS12280 at 507.129 kb on - strand, within BBR_RS12280 at 507.152 kb on + strand, within BBR_RS12280 at 507.160 kb on - strand, within BBR_RS12280 at 507.162 kb on + strand, within BBR_RS12280 at 507.167 kb on + strand, within BBR_RS12280 at 507.170 kb on - strand, within BBR_RS12280 at 507.173 kb on - strand, within BBR_RS12280 at 507.179 kb on + strand, within BBR_RS12280 at 507.179 kb on + strand, within BBR_RS12280 at 507.194 kb on - strand, within BBR_RS12280 at 507.196 kb on + strand, within BBR_RS12280 at 507.210 kb on - strand, within BBR_RS12280 at 507.224 kb on + strand, within BBR_RS12280 at 507.224 kb on + strand, within BBR_RS12280 at 507.272 kb on + strand, within BBR_RS12280 at 507.280 kb on - strand, within BBR_RS12280 at 507.280 kb on - strand, within BBR_RS12280 at 507.280 kb on - strand, within BBR_RS12280 at 507.290 kb on + strand, within BBR_RS12280 at 507.290 kb on + strand, within BBR_RS12280 at 507.301 kb on + strand, within BBR_RS12280 at 507.301 kb on + strand, within BBR_RS12280 at 507.303 kb on - strand, within BBR_RS12280 at 507.314 kb on - strand, within BBR_RS12280 at 507.316 kb on + strand, within BBR_RS12280 at 507.316 kb on + strand, within BBR_RS12280 at 507.342 kb on + strand, within BBR_RS12280 at 507.342 kb on + strand, within BBR_RS12280 at 507.349 kb on + strand, within BBR_RS12280 at 507.349 kb on + strand, within BBR_RS12280 at 507.357 kb on - strand, within BBR_RS12280 at 507.357 kb on - strand, within BBR_RS12280 at 507.367 kb on - strand, within BBR_RS12280 at 507.370 kb on + strand, within BBR_RS12280 at 507.370 kb on + strand, within BBR_RS12280 at 507.378 kb on - strand, within BBR_RS12280 at 507.383 kb on - strand, within BBR_RS12280 at 507.385 kb on + strand, within BBR_RS12280 at 507.391 kb on - strand, within BBR_RS12280 at 507.392 kb on + strand, within BBR_RS12280 at 507.393 kb on + strand, within BBR_RS12280 at 507.393 kb on + strand, within BBR_RS12280 at 507.399 kb on - strand, within BBR_RS12280 at 507.404 kb on + strand, within BBR_RS12280 at 507.422 kb on - strand, within BBR_RS12280 at 507.422 kb on - strand, within BBR_RS12280 at 507.462 kb on + strand, within BBR_RS12280 at 507.470 kb on - strand, within BBR_RS12280 at 507.472 kb on - strand, within BBR_RS12280 at 507.481 kb on + strand, within BBR_RS12280 at 507.481 kb on + strand, within BBR_RS12280 at 507.530 kb on - strand, within BBR_RS12280 at 507.530 kb on - strand, within BBR_RS12280 at 507.611 kb on + strand at 507.619 kb on - strand at 507.621 kb on + strand at 507.622 kb on + strand at 507.622 kb on + strand at 507.622 kb on + strand at 507.630 kb on - strand at 507.630 kb on - strand at 507.635 kb on - strand at 507.648 kb on + strand at 507.656 kb on - strand at 507.656 kb on - strand at 507.675 kb on - strand at 507.934 kb on + strand at 507.937 kb on - strand at 507.942 kb on - strand at 508.005 kb on + strand at 508.008 kb on - strand at 508.018 kb on - strand at 508.018 kb on - strand at 508.018 kb on - strand at 508.070 kb on + strand, within BBR_RS12285 at 508.070 kb on - strand, within BBR_RS12285 at 508.108 kb on - strand, within BBR_RS12285 at 508.130 kb on + strand, within BBR_RS12285 at 508.149 kb on - strand, within BBR_RS12285 at 508.204 kb on - strand, within BBR_RS12285 at 508.209 kb on + strand, within BBR_RS12285 at 508.261 kb on - strand, within BBR_RS12285 at 508.263 kb on - strand, within BBR_RS12285 at 508.280 kb on + strand, within BBR_RS12285 at 508.290 kb on + strand, within BBR_RS12285 at 508.290 kb on + strand, within BBR_RS12285 at 508.291 kb on + strand, within BBR_RS12285 at 508.291 kb on + strand, within BBR_RS12285 at 508.298 kb on - strand, within BBR_RS12285 at 508.299 kb on - strand, within BBR_RS12285 at 508.316 kb on - strand, within BBR_RS12285 at 508.336 kb on + strand, within BBR_RS12285 at 508.336 kb on + strand, within BBR_RS12285 at 508.336 kb on + strand, within BBR_RS12285 at 508.344 kb on - strand, within BBR_RS12285 at 508.346 kb on + strand, within BBR_RS12285 at 508.358 kb on + strand, within BBR_RS12285 at 508.361 kb on - strand, within BBR_RS12285 at 508.407 kb on + strand, within BBR_RS12285 at 508.415 kb on - strand, within BBR_RS12285 at 508.415 kb on - strand, within BBR_RS12285 at 508.440 kb on + strand, within BBR_RS12285 at 508.448 kb on - strand, within BBR_RS12285 at 508.487 kb on + strand, within BBR_RS12285 at 508.531 kb on + strand, within BBR_RS12285 at 508.532 kb on + strand, within BBR_RS12285 at 508.558 kb on + strand, within BBR_RS12285 at 508.566 kb on - strand, within BBR_RS12285 at 508.589 kb on + strand, within BBR_RS12285 at 508.594 kb on + strand, within BBR_RS12285 at 508.594 kb on + strand, within BBR_RS12285 at 508.621 kb on + strand, within BBR_RS12285 at 508.635 kb on + strand, within BBR_RS12285
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 505,847 - BBR_RS12275 0.77 -0.3 505,853 + BBR_RS12275 0.77 -1.5 505,853 + BBR_RS12275 0.77 +2.4 505,861 + BBR_RS12275 0.78 +1.3 505,861 - BBR_RS12275 0.78 -0.4 505,861 - BBR_RS12275 0.78 +0.2 505,869 - BBR_RS12275 0.79 -0.7 505,869 - BBR_RS12275 0.79 -2.5 505,877 - BBR_RS12275 0.79 -0.6 505,877 - BBR_RS12275 0.79 -0.3 505,940 - BBR_RS12275 0.83 +1.3 505,990 - BBR_RS12275 0.87 -2.2 505,997 - BBR_RS12275 0.87 +0.5 506,003 + BBR_RS12275 0.88 +0.3 506,004 + BBR_RS12275 0.88 +2.0 506,007 - BBR_RS12275 0.88 +0.8 506,025 + BBR_RS12275 0.89 +2.3 506,054 + -1.6 506,062 - -0.8 506,131 - +0.7 506,173 - +0.0 506,188 - -2.6 506,201 - +0.7 506,212 + +0.3 506,219 + +0.9 506,241 + -0.3 506,243 - -2.2 506,260 - +0.8 506,265 + +2.0 506,294 + +1.1 506,314 - +1.3 506,314 - -1.4 506,314 - +0.4 506,337 - +0.4 506,352 + -2.2 506,360 - +2.0 506,360 - -0.2 506,379 + +0.1 506,379 + +0.4 506,379 + -1.1 506,379 + +0.7 506,385 - +0.4 506,386 + -0.7 506,387 - +1.2 506,387 - -0.9 506,389 + +2.8 506,394 + -0.5 506,397 - +1.1 506,397 - +2.6 506,399 + -0.7 506,399 + +0.5 506,399 + +0.9 506,407 - -2.2 506,437 + -1.2 506,451 + +0.0 506,459 - -1.9 506,462 + +1.2 506,462 + +0.6 506,464 + -1.4 506,482 - -2.2 506,482 - +0.4 506,503 + +1.0 506,534 + -2.1 506,537 + +2.2 506,542 + -0.4 506,543 + -1.2 506,543 + -0.0 506,550 - +1.0 506,554 + -0.5 506,554 + -0.5 506,566 + -2.3 506,587 - +1.1 506,589 + +0.7 506,589 + +1.1 506,589 + -0.5 506,589 + -0.4 506,597 - -1.5 506,610 - +1.9 506,610 - +0.6 506,623 - -2.3 506,630 - +2.6 506,641 - +1.7 506,682 - +1.1 506,698 - -2.2 506,699 - -0.7 506,709 + +2.1 506,717 - +0.3 506,754 + +1.5 506,768 + +1.9 506,926 - BBR_RS12280 0.13 -0.9 506,969 + BBR_RS12280 0.18 +0.2 506,969 + BBR_RS12280 0.18 -1.1 506,969 + BBR_RS12280 0.18 -1.7 506,977 - BBR_RS12280 0.19 +2.4 506,977 - BBR_RS12280 0.19 +2.4 507,011 - BBR_RS12280 0.23 +0.5 507,011 - BBR_RS12280 0.23 +0.1 507,034 + BBR_RS12280 0.26 -0.7 507,049 - BBR_RS12280 0.27 -0.7 507,050 + BBR_RS12280 0.27 -1.7 507,064 - BBR_RS12280 0.29 +1.6 507,067 + BBR_RS12280 0.29 -1.2 507,074 - BBR_RS12280 0.30 +0.4 507,108 - BBR_RS12280 0.34 -0.9 507,115 + BBR_RS12280 0.35 -0.5 507,129 - BBR_RS12280 0.37 +0.4 507,152 + BBR_RS12280 0.39 -0.7 507,160 - BBR_RS12280 0.40 +0.2 507,162 + BBR_RS12280 0.40 +0.1 507,167 + BBR_RS12280 0.41 +1.5 507,170 - BBR_RS12280 0.41 +0.1 507,173 - BBR_RS12280 0.42 -2.3 507,179 + BBR_RS12280 0.42 -1.8 507,179 + BBR_RS12280 0.42 -1.5 507,194 - BBR_RS12280 0.44 +0.3 507,196 + BBR_RS12280 0.44 -1.0 507,210 - BBR_RS12280 0.46 -1.6 507,224 + BBR_RS12280 0.48 -0.8 507,224 + BBR_RS12280 0.48 +0.6 507,272 + BBR_RS12280 0.53 +0.8 507,280 - BBR_RS12280 0.54 +0.5 507,280 - BBR_RS12280 0.54 -2.0 507,280 - BBR_RS12280 0.54 +0.1 507,290 + BBR_RS12280 0.55 +0.5 507,290 + BBR_RS12280 0.55 +0.3 507,301 + BBR_RS12280 0.56 -1.3 507,301 + BBR_RS12280 0.56 +0.8 507,303 - BBR_RS12280 0.57 -1.2 507,314 - BBR_RS12280 0.58 +0.1 507,316 + BBR_RS12280 0.58 +0.1 507,316 + BBR_RS12280 0.58 -2.2 507,342 + BBR_RS12280 0.61 -2.5 507,342 + BBR_RS12280 0.61 -0.7 507,349 + BBR_RS12280 0.62 -0.2 507,349 + BBR_RS12280 0.62 -0.4 507,357 - BBR_RS12280 0.63 -1.8 507,357 - BBR_RS12280 0.63 -0.5 507,367 - BBR_RS12280 0.64 -1.9 507,370 + BBR_RS12280 0.64 +0.5 507,370 + BBR_RS12280 0.64 -0.7 507,378 - BBR_RS12280 0.65 +1.9 507,383 - BBR_RS12280 0.66 -0.7 507,385 + BBR_RS12280 0.66 +1.4 507,391 - BBR_RS12280 0.67 +0.5 507,392 + BBR_RS12280 0.67 -1.9 507,393 + BBR_RS12280 0.67 +0.1 507,393 + BBR_RS12280 0.67 -0.4 507,399 - BBR_RS12280 0.68 -0.0 507,404 + BBR_RS12280 0.68 -0.9 507,422 - BBR_RS12280 0.70 -0.7 507,422 - BBR_RS12280 0.70 +0.8 507,462 + BBR_RS12280 0.75 -0.7 507,470 - BBR_RS12280 0.76 -2.0 507,472 - BBR_RS12280 0.76 -2.0 507,481 + BBR_RS12280 0.77 -1.7 507,481 + BBR_RS12280 0.77 -1.8 507,530 - BBR_RS12280 0.83 +1.9 507,530 - BBR_RS12280 0.83 -0.3 507,611 + +0.1 507,619 - -0.8 507,621 + -0.9 507,622 + +1.3 507,622 + -1.1 507,622 + +1.3 507,630 - +0.6 507,630 - -0.1 507,635 - +1.2 507,648 + +2.2 507,656 - -1.4 507,656 - -0.4 507,675 - -0.5 507,934 + +2.7 507,937 - +2.0 507,942 - -0.8 508,005 + +1.4 508,008 - -1.1 508,018 - +2.1 508,018 - -0.4 508,018 - -1.7 508,070 + BBR_RS12285 0.12 +1.6 508,070 - BBR_RS12285 0.12 -2.1 508,108 - BBR_RS12285 0.16 +0.1 508,130 + BBR_RS12285 0.18 +2.0 508,149 - BBR_RS12285 0.20 -1.3 508,204 - BBR_RS12285 0.25 -1.4 508,209 + BBR_RS12285 0.25 -0.6 508,261 - BBR_RS12285 0.30 +0.6 508,263 - BBR_RS12285 0.30 -1.9 508,280 + BBR_RS12285 0.32 +0.5 508,290 + BBR_RS12285 0.33 -0.3 508,290 + BBR_RS12285 0.33 +1.1 508,291 + BBR_RS12285 0.33 +0.0 508,291 + BBR_RS12285 0.33 -1.6 508,298 - BBR_RS12285 0.34 +0.6 508,299 - BBR_RS12285 0.34 +0.8 508,316 - BBR_RS12285 0.35 -2.0 508,336 + BBR_RS12285 0.37 +0.7 508,336 + BBR_RS12285 0.37 +1.7 508,336 + BBR_RS12285 0.37 -0.1 508,344 - BBR_RS12285 0.38 +2.0 508,346 + BBR_RS12285 0.38 +0.2 508,358 + BBR_RS12285 0.39 +2.4 508,361 - BBR_RS12285 0.40 +0.1 508,407 + BBR_RS12285 0.44 -0.2 508,415 - BBR_RS12285 0.45 +2.4 508,415 - BBR_RS12285 0.45 -1.0 508,440 + BBR_RS12285 0.47 -1.0 508,448 - BBR_RS12285 0.48 +1.3 508,487 + BBR_RS12285 0.52 +1.5 508,531 + BBR_RS12285 0.56 -1.6 508,532 + BBR_RS12285 0.56 +1.5 508,558 + BBR_RS12285 0.58 -0.9 508,566 - BBR_RS12285 0.59 +2.0 508,589 + BBR_RS12285 0.61 -2.0 508,594 + BBR_RS12285 0.62 -2.1 508,594 + BBR_RS12285 0.62 -1.1 508,621 + BBR_RS12285 0.64 -0.6 508,635 + BBR_RS12285 0.66 -0.3
Or see this region's nucleotide sequence