Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12085 and BBR_RS12090 are separated by 264 nucleotides BBR_RS12090 and BBR_RS12095 are separated by 11 nucleotides BBR_RS12095 and BBR_RS12100 are separated by 35 nucleotides
BBR_RS12085: BBR_RS12085 - D-alanine--D-alanine ligase A, at 459,458 to 460,645
_RS12085
BBR_RS12090: BBR_RS12090 - Solute-binding protein of ABC transporter system, at 460,910 to 462,076
_RS12090
BBR_RS12095: BBR_RS12095 - Permease of ABC transporter system, at 462,088 to 463,026
_RS12095
BBR_RS12100: BBR_RS12100 - ABC transporter permease, at 463,062 to 463,934
_RS12100
Position (kb) 460
461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 460.624 kb on + strand at 460.624 kb on + strand at 460.624 kb on + strand at 460.668 kb on - strand at 460.710 kb on + strand at 460.718 kb on - strand at 460.731 kb on + strand at 460.734 kb on + strand at 460.770 kb on + strand at 460.771 kb on - strand at 460.789 kb on + strand at 460.790 kb on + strand at 460.790 kb on + strand at 460.790 kb on + strand at 460.798 kb on - strand at 460.800 kb on + strand at 460.800 kb on + strand at 460.808 kb on - strand at 460.808 kb on - strand at 460.808 kb on - strand at 460.838 kb on - strand at 460.861 kb on + strand at 460.865 kb on + strand at 460.867 kb on + strand at 460.925 kb on - strand at 460.941 kb on + strand at 460.963 kb on + strand at 460.963 kb on + strand at 460.971 kb on - strand at 460.971 kb on - strand at 460.971 kb on - strand at 460.989 kb on - strand at 460.989 kb on - strand at 461.016 kb on + strand at 461.034 kb on - strand, within BBR_RS12090 at 461.050 kb on + strand, within BBR_RS12090 at 461.050 kb on + strand, within BBR_RS12090 at 461.082 kb on - strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.110 kb on + strand, within BBR_RS12090 at 461.185 kb on - strand, within BBR_RS12090 at 461.191 kb on - strand, within BBR_RS12090 at 461.195 kb on + strand, within BBR_RS12090 at 461.215 kb on + strand, within BBR_RS12090 at 461.215 kb on + strand, within BBR_RS12090 at 461.235 kb on + strand, within BBR_RS12090 at 461.241 kb on - strand, within BBR_RS12090 at 461.248 kb on - strand, within BBR_RS12090 at 461.266 kb on + strand, within BBR_RS12090 at 461.291 kb on - strand, within BBR_RS12090 at 461.291 kb on - strand, within BBR_RS12090 at 461.311 kb on - strand, within BBR_RS12090 at 461.339 kb on + strand, within BBR_RS12090 at 461.339 kb on + strand, within BBR_RS12090 at 461.342 kb on + strand, within BBR_RS12090 at 461.342 kb on - strand, within BBR_RS12090 at 461.344 kb on + strand, within BBR_RS12090 at 461.351 kb on + strand, within BBR_RS12090 at 461.359 kb on - strand, within BBR_RS12090 at 461.359 kb on - strand, within BBR_RS12090 at 461.359 kb on - strand, within BBR_RS12090 at 461.377 kb on - strand, within BBR_RS12090 at 461.379 kb on + strand, within BBR_RS12090 at 461.387 kb on - strand, within BBR_RS12090 at 461.411 kb on + strand, within BBR_RS12090 at 461.452 kb on + strand, within BBR_RS12090 at 461.452 kb on - strand, within BBR_RS12090 at 461.517 kb on - strand, within BBR_RS12090 at 461.517 kb on - strand, within BBR_RS12090 at 461.558 kb on + strand, within BBR_RS12090 at 461.587 kb on - strand, within BBR_RS12090 at 461.597 kb on - strand, within BBR_RS12090 at 461.602 kb on + strand, within BBR_RS12090 at 461.604 kb on - strand, within BBR_RS12090 at 461.606 kb on + strand, within BBR_RS12090 at 461.644 kb on + strand, within BBR_RS12090 at 461.650 kb on - strand, within BBR_RS12090 at 461.652 kb on + strand, within BBR_RS12090 at 461.660 kb on - strand, within BBR_RS12090 at 461.665 kb on - strand, within BBR_RS12090 at 461.679 kb on + strand, within BBR_RS12090 at 461.679 kb on + strand, within BBR_RS12090 at 461.679 kb on + strand, within BBR_RS12090 at 461.679 kb on + strand, within BBR_RS12090 at 461.687 kb on - strand, within BBR_RS12090 at 461.687 kb on - strand, within BBR_RS12090 at 461.687 kb on - strand, within BBR_RS12090 at 461.689 kb on + strand, within BBR_RS12090 at 461.689 kb on + strand, within BBR_RS12090 at 461.691 kb on + strand, within BBR_RS12090 at 461.691 kb on + strand, within BBR_RS12090 at 461.693 kb on + strand, within BBR_RS12090 at 461.693 kb on + strand, within BBR_RS12090 at 461.697 kb on - strand, within BBR_RS12090 at 461.697 kb on - strand, within BBR_RS12090 at 461.697 kb on - strand, within BBR_RS12090 at 461.699 kb on - strand, within BBR_RS12090 at 461.699 kb on - strand, within BBR_RS12090 at 461.701 kb on - strand, within BBR_RS12090 at 461.701 kb on - strand, within BBR_RS12090 at 461.748 kb on - strand, within BBR_RS12090 at 461.748 kb on - strand, within BBR_RS12090 at 461.753 kb on + strand, within BBR_RS12090 at 461.753 kb on + strand, within BBR_RS12090 at 461.767 kb on + strand, within BBR_RS12090 at 461.767 kb on + strand, within BBR_RS12090 at 461.767 kb on + strand, within BBR_RS12090 at 461.767 kb on + strand, within BBR_RS12090 at 461.775 kb on - strand, within BBR_RS12090 at 461.775 kb on - strand, within BBR_RS12090 at 461.785 kb on + strand, within BBR_RS12090 at 461.785 kb on + strand, within BBR_RS12090 at 461.787 kb on + strand, within BBR_RS12090 at 461.800 kb on - strand, within BBR_RS12090 at 461.802 kb on + strand, within BBR_RS12090 at 461.810 kb on - strand, within BBR_RS12090 at 461.810 kb on - strand, within BBR_RS12090 at 461.810 kb on - strand, within BBR_RS12090 at 461.810 kb on - strand, within BBR_RS12090 at 461.836 kb on + strand, within BBR_RS12090 at 461.866 kb on + strand, within BBR_RS12090 at 461.869 kb on - strand, within BBR_RS12090 at 461.874 kb on - strand, within BBR_RS12090 at 461.874 kb on - strand, within BBR_RS12090 at 461.882 kb on - strand, within BBR_RS12090 at 461.891 kb on - strand, within BBR_RS12090 at 461.904 kb on - strand, within BBR_RS12090 at 461.904 kb on - strand, within BBR_RS12090 at 461.907 kb on + strand, within BBR_RS12090 at 461.915 kb on - strand, within BBR_RS12090 at 461.918 kb on + strand, within BBR_RS12090 at 461.918 kb on + strand, within BBR_RS12090 at 461.921 kb on - strand, within BBR_RS12090 at 461.931 kb on + strand, within BBR_RS12090 at 461.939 kb on + strand, within BBR_RS12090 at 461.939 kb on - strand, within BBR_RS12090 at 461.949 kb on + strand, within BBR_RS12090 at 461.954 kb on + strand, within BBR_RS12090 at 461.957 kb on - strand, within BBR_RS12090 at 461.962 kb on - strand at 461.962 kb on - strand at 461.964 kb on + strand at 461.964 kb on + strand at 461.964 kb on + strand at 461.964 kb on + strand at 461.964 kb on + strand at 461.972 kb on - strand at 461.972 kb on - strand at 461.972 kb on - strand at 461.972 kb on - strand at 461.972 kb on - strand at 461.972 kb on - strand at 462.001 kb on + strand at 462.010 kb on - strand at 462.011 kb on + strand at 462.038 kb on - strand at 462.041 kb on + strand at 462.049 kb on - strand at 462.082 kb on + strand at 462.084 kb on + strand at 462.103 kb on + strand at 462.108 kb on + strand at 462.108 kb on + strand at 462.108 kb on + strand at 462.111 kb on - strand at 462.111 kb on - strand at 462.116 kb on - strand at 462.116 kb on - strand at 462.116 kb on - strand at 462.116 kb on - strand at 462.116 kb on - strand at 462.123 kb on + strand at 462.129 kb on + strand at 462.131 kb on - strand at 462.136 kb on + strand at 462.185 kb on + strand, within BBR_RS12095 at 462.203 kb on - strand, within BBR_RS12095 at 462.203 kb on - strand, within BBR_RS12095 at 462.214 kb on + strand, within BBR_RS12095 at 462.275 kb on - strand, within BBR_RS12095 at 462.307 kb on - strand, within BBR_RS12095 at 462.333 kb on + strand, within BBR_RS12095 at 462.341 kb on - strand, within BBR_RS12095 at 462.349 kb on + strand, within BBR_RS12095 at 462.364 kb on + strand, within BBR_RS12095 at 462.364 kb on + strand, within BBR_RS12095 at 462.364 kb on + strand, within BBR_RS12095 at 462.364 kb on + strand, within BBR_RS12095 at 462.395 kb on + strand, within BBR_RS12095 at 462.395 kb on + strand, within BBR_RS12095 at 462.444 kb on + strand, within BBR_RS12095 at 462.452 kb on - strand, within BBR_RS12095 at 462.476 kb on - strand, within BBR_RS12095 at 462.478 kb on - strand, within BBR_RS12095 at 462.504 kb on - strand, within BBR_RS12095 at 462.506 kb on + strand, within BBR_RS12095 at 462.569 kb on + strand, within BBR_RS12095 at 462.574 kb on + strand, within BBR_RS12095 at 462.590 kb on + strand, within BBR_RS12095 at 462.619 kb on - strand, within BBR_RS12095 at 462.619 kb on - strand, within BBR_RS12095 at 462.630 kb on - strand, within BBR_RS12095 at 462.707 kb on + strand, within BBR_RS12095 at 462.707 kb on + strand, within BBR_RS12095 at 462.707 kb on + strand, within BBR_RS12095 at 462.715 kb on - strand, within BBR_RS12095 at 462.715 kb on - strand, within BBR_RS12095 at 462.715 kb on - strand, within BBR_RS12095 at 462.717 kb on - strand, within BBR_RS12095 at 462.724 kb on + strand, within BBR_RS12095 at 462.742 kb on + strand, within BBR_RS12095 at 462.757 kb on + strand, within BBR_RS12095 at 462.757 kb on + strand, within BBR_RS12095 at 462.757 kb on + strand, within BBR_RS12095 at 462.757 kb on + strand, within BBR_RS12095 at 462.789 kb on - strand, within BBR_RS12095 at 462.789 kb on - strand, within BBR_RS12095 at 462.807 kb on + strand, within BBR_RS12095 at 462.818 kb on - strand, within BBR_RS12095 at 462.847 kb on + strand, within BBR_RS12095 at 462.855 kb on - strand, within BBR_RS12095 at 462.855 kb on - strand, within BBR_RS12095 at 462.855 kb on - strand, within BBR_RS12095 at 462.909 kb on + strand, within BBR_RS12095 at 462.922 kb on - strand, within BBR_RS12095 at 462.927 kb on + strand, within BBR_RS12095 at 462.929 kb on + strand, within BBR_RS12095 at 462.937 kb on - strand at 462.937 kb on - strand at 462.942 kb on - strand at 462.947 kb on - strand at 462.987 kb on + strand at 462.987 kb on + strand at 462.987 kb on + strand at 462.987 kb on + strand at 462.997 kb on + strand at 463.005 kb on - strand at 463.005 kb on - strand at 463.008 kb on + strand at 463.032 kb on + strand at 463.035 kb on - strand at 463.040 kb on - strand at 463.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 460,624 + -1.8 460,624 + -1.0 460,624 + -0.9 460,668 - +0.2 460,710 + -1.9 460,718 - -1.8 460,731 + -0.8 460,734 + +0.2 460,770 + +0.1 460,771 - +0.8 460,789 + +2.0 460,790 + -1.1 460,790 + -1.6 460,790 + -0.6 460,798 - +1.4 460,800 + -1.1 460,800 + +0.1 460,808 - +2.4 460,808 - -0.1 460,808 - -0.8 460,838 - +0.2 460,861 + +0.6 460,865 + -0.4 460,867 + +1.4 460,925 - +0.3 460,941 + +2.7 460,963 + -1.9 460,963 + -0.5 460,971 - +1.0 460,971 - -0.9 460,971 - -1.4 460,989 - -0.2 460,989 - +1.4 461,016 + +1.1 461,034 - BBR_RS12090 0.11 +2.2 461,050 + BBR_RS12090 0.12 +2.0 461,050 + BBR_RS12090 0.12 +0.8 461,082 - BBR_RS12090 0.15 +1.6 461,110 + BBR_RS12090 0.17 +1.5 461,110 + BBR_RS12090 0.17 -0.4 461,110 + BBR_RS12090 0.17 -0.1 461,110 + BBR_RS12090 0.17 -0.8 461,185 - BBR_RS12090 0.24 +1.7 461,191 - BBR_RS12090 0.24 -2.1 461,195 + BBR_RS12090 0.24 -1.8 461,215 + BBR_RS12090 0.26 -0.8 461,215 + BBR_RS12090 0.26 -2.0 461,235 + BBR_RS12090 0.28 -0.2 461,241 - BBR_RS12090 0.28 -0.0 461,248 - BBR_RS12090 0.29 -0.8 461,266 + BBR_RS12090 0.31 +0.8 461,291 - BBR_RS12090 0.33 -1.3 461,291 - BBR_RS12090 0.33 +0.4 461,311 - BBR_RS12090 0.34 +1.3 461,339 + BBR_RS12090 0.37 -0.6 461,339 + BBR_RS12090 0.37 -0.8 461,342 + BBR_RS12090 0.37 -1.4 461,342 - BBR_RS12090 0.37 -0.8 461,344 + BBR_RS12090 0.37 +2.5 461,351 + BBR_RS12090 0.38 +0.1 461,359 - BBR_RS12090 0.38 -1.8 461,359 - BBR_RS12090 0.38 +2.6 461,359 - BBR_RS12090 0.38 +2.5 461,377 - BBR_RS12090 0.40 +0.3 461,379 + BBR_RS12090 0.40 -0.3 461,387 - BBR_RS12090 0.41 +1.3 461,411 + BBR_RS12090 0.43 +1.1 461,452 + BBR_RS12090 0.46 -1.8 461,452 - BBR_RS12090 0.46 -0.3 461,517 - BBR_RS12090 0.52 -0.1 461,517 - BBR_RS12090 0.52 +0.2 461,558 + BBR_RS12090 0.56 -1.1 461,587 - BBR_RS12090 0.58 +0.8 461,597 - BBR_RS12090 0.59 +1.4 461,602 + BBR_RS12090 0.59 +1.6 461,604 - BBR_RS12090 0.59 +0.4 461,606 + BBR_RS12090 0.60 +1.7 461,644 + BBR_RS12090 0.63 +0.1 461,650 - BBR_RS12090 0.63 +0.2 461,652 + BBR_RS12090 0.64 +0.2 461,660 - BBR_RS12090 0.64 +1.9 461,665 - BBR_RS12090 0.65 -1.8 461,679 + BBR_RS12090 0.66 -1.0 461,679 + BBR_RS12090 0.66 +0.2 461,679 + BBR_RS12090 0.66 +0.5 461,679 + BBR_RS12090 0.66 +1.3 461,687 - BBR_RS12090 0.67 -0.7 461,687 - BBR_RS12090 0.67 -2.1 461,687 - BBR_RS12090 0.67 -0.2 461,689 + BBR_RS12090 0.67 -0.3 461,689 + BBR_RS12090 0.67 +0.2 461,691 + BBR_RS12090 0.67 -0.1 461,691 + BBR_RS12090 0.67 +0.8 461,693 + BBR_RS12090 0.67 +1.5 461,693 + BBR_RS12090 0.67 -1.1 461,697 - BBR_RS12090 0.67 +0.7 461,697 - BBR_RS12090 0.67 -1.4 461,697 - BBR_RS12090 0.67 -1.6 461,699 - BBR_RS12090 0.68 +0.4 461,699 - BBR_RS12090 0.68 -0.1 461,701 - BBR_RS12090 0.68 -1.7 461,701 - BBR_RS12090 0.68 +1.0 461,748 - BBR_RS12090 0.72 +0.6 461,748 - BBR_RS12090 0.72 +1.7 461,753 + BBR_RS12090 0.72 +1.2 461,753 + BBR_RS12090 0.72 +0.6 461,767 + BBR_RS12090 0.73 +0.2 461,767 + BBR_RS12090 0.73 -1.3 461,767 + BBR_RS12090 0.73 +2.4 461,767 + BBR_RS12090 0.73 -1.0 461,775 - BBR_RS12090 0.74 +0.5 461,775 - BBR_RS12090 0.74 +1.5 461,785 + BBR_RS12090 0.75 +0.7 461,785 + BBR_RS12090 0.75 -1.4 461,787 + BBR_RS12090 0.75 +0.2 461,800 - BBR_RS12090 0.76 +1.1 461,802 + BBR_RS12090 0.76 +0.3 461,810 - BBR_RS12090 0.77 -1.5 461,810 - BBR_RS12090 0.77 +0.3 461,810 - BBR_RS12090 0.77 -2.3 461,810 - BBR_RS12090 0.77 +2.0 461,836 + BBR_RS12090 0.79 +0.6 461,866 + BBR_RS12090 0.82 +0.8 461,869 - BBR_RS12090 0.82 -0.3 461,874 - BBR_RS12090 0.83 +0.5 461,874 - BBR_RS12090 0.83 -1.2 461,882 - BBR_RS12090 0.83 -1.4 461,891 - BBR_RS12090 0.84 -1.0 461,904 - BBR_RS12090 0.85 +0.9 461,904 - BBR_RS12090 0.85 -1.1 461,907 + BBR_RS12090 0.85 +0.7 461,915 - BBR_RS12090 0.86 +3.0 461,918 + BBR_RS12090 0.86 +1.7 461,918 + BBR_RS12090 0.86 +0.0 461,921 - BBR_RS12090 0.87 -2.8 461,931 + BBR_RS12090 0.87 -1.1 461,939 + BBR_RS12090 0.88 -0.9 461,939 - BBR_RS12090 0.88 -1.9 461,949 + BBR_RS12090 0.89 -1.3 461,954 + BBR_RS12090 0.89 +0.8 461,957 - BBR_RS12090 0.90 -1.0 461,962 - -0.9 461,962 - +0.5 461,964 + -0.2 461,964 + -1.4 461,964 + -0.2 461,964 + -2.6 461,964 + +1.1 461,972 - -1.4 461,972 - -0.3 461,972 - +2.1 461,972 - +1.6 461,972 - -0.1 461,972 - -0.7 462,001 + -1.6 462,010 - -0.6 462,011 + +1.4 462,038 - +0.0 462,041 + +1.0 462,049 - -1.7 462,082 + +0.8 462,084 + +0.2 462,103 + +0.8 462,108 + -1.3 462,108 + -0.4 462,108 + +0.7 462,111 - +2.6 462,111 - +1.8 462,116 - +0.1 462,116 - -2.3 462,116 - +0.7 462,116 - -1.2 462,116 - +1.6 462,123 + -1.2 462,129 + +0.8 462,131 - -1.6 462,136 + +2.4 462,185 + BBR_RS12095 0.10 -0.6 462,203 - BBR_RS12095 0.12 +0.6 462,203 - BBR_RS12095 0.12 +1.1 462,214 + BBR_RS12095 0.13 -0.6 462,275 - BBR_RS12095 0.20 +2.6 462,307 - BBR_RS12095 0.23 -0.3 462,333 + BBR_RS12095 0.26 +0.4 462,341 - BBR_RS12095 0.27 +0.6 462,349 + BBR_RS12095 0.28 +1.0 462,364 + BBR_RS12095 0.29 -0.6 462,364 + BBR_RS12095 0.29 +0.1 462,364 + BBR_RS12095 0.29 -1.6 462,364 + BBR_RS12095 0.29 +1.4 462,395 + BBR_RS12095 0.33 +0.2 462,395 + BBR_RS12095 0.33 -0.9 462,444 + BBR_RS12095 0.38 +2.4 462,452 - BBR_RS12095 0.39 -0.2 462,476 - BBR_RS12095 0.41 -0.2 462,478 - BBR_RS12095 0.42 -2.5 462,504 - BBR_RS12095 0.44 +0.1 462,506 + BBR_RS12095 0.45 -1.9 462,569 + BBR_RS12095 0.51 -0.0 462,574 + BBR_RS12095 0.52 +0.9 462,590 + BBR_RS12095 0.53 -0.6 462,619 - BBR_RS12095 0.57 -1.2 462,619 - BBR_RS12095 0.57 -1.4 462,630 - BBR_RS12095 0.58 +1.2 462,707 + BBR_RS12095 0.66 +1.0 462,707 + BBR_RS12095 0.66 -0.4 462,707 + BBR_RS12095 0.66 -1.1 462,715 - BBR_RS12095 0.67 -0.6 462,715 - BBR_RS12095 0.67 +0.5 462,715 - BBR_RS12095 0.67 +0.1 462,717 - BBR_RS12095 0.67 +1.1 462,724 + BBR_RS12095 0.68 +0.2 462,742 + BBR_RS12095 0.70 +0.2 462,757 + BBR_RS12095 0.71 -0.2 462,757 + BBR_RS12095 0.71 -1.6 462,757 + BBR_RS12095 0.71 -1.6 462,757 + BBR_RS12095 0.71 -2.5 462,789 - BBR_RS12095 0.75 -0.9 462,789 - BBR_RS12095 0.75 -1.8 462,807 + BBR_RS12095 0.77 -2.5 462,818 - BBR_RS12095 0.78 -0.9 462,847 + BBR_RS12095 0.81 -1.8 462,855 - BBR_RS12095 0.82 +1.5 462,855 - BBR_RS12095 0.82 +1.8 462,855 - BBR_RS12095 0.82 -1.1 462,909 + BBR_RS12095 0.87 +1.7 462,922 - BBR_RS12095 0.89 +0.4 462,927 + BBR_RS12095 0.89 -2.0 462,929 + BBR_RS12095 0.90 -2.7 462,937 - +0.9 462,937 - -0.8 462,942 - +1.0 462,947 - -0.2 462,987 + +2.4 462,987 + +0.1 462,987 + -0.0 462,987 + -2.4 462,997 + -1.1 463,005 - +0.1 463,005 - -0.7 463,008 + -0.1 463,032 + +1.6 463,035 - +1.0 463,040 - +1.4 463,054 - -1.2
Or see this region's nucleotide sequence