Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10560

Experiment: cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse3; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
85,777	-				-0.9
85,810	-				+0.2
85,810	-				-1.1
85,867	+				-1.6
85,873	+				-0.9
85,875	-				+0.9
85,875	-				-1.8
85,879	+				-1.4
85,881	-				+1.0
85,904	+				-1.7
85,920	+				+2.4
86,052	+		BBR_RS10555	0.32	-0.8
86,235	+		BBR_RS10555	0.80	-2.0
86,275	+				+0.7
86,275	+				+1.0
86,283	-				+1.6
86,296	+				-1.8
86,296	+				-1.2
86,296	+				+0.4
86,315	-				-0.7
86,315	-				+0.9
86,317	+				-0.7
86,325	-				-0.8
86,351	-				-0.4
86,352	+				-0.1
86,361	+				-0.2
86,361	+				-0.3
86,361	-				-1.1
86,369	-				+2.1
86,373	+				+2.0
86,401	+				-1.1
86,401	+				+0.7
86,401	+				+0.8
86,425	-				-0.8
86,425	-				-0.8
86,440	-				-1.1
86,447	+				+0.6
86,475	+				+0.6
86,493	+				+0.0
86,520	-				+0.9
86,530	-				-0.2
86,535	-				-1.2
86,536	-				+0.1
86,559	+				-2.3
86,567	+				+0.6
86,572	+				-0.2
86,575	-				-1.8
86,580	-				-0.2
86,580	-				-2.0
86,586	+		BBR_RS10560	0.11	-1.2
86,598	+		BBR_RS10560	0.13	-0.8
86,598	+		BBR_RS10560	0.13	-0.6
86,600	+		BBR_RS10560	0.13	-0.5
86,606	-		BBR_RS10560	0.14	-0.8
86,608	-		BBR_RS10560	0.15	-1.8
86,612	+		BBR_RS10560	0.15	+2.8
86,612	+		BBR_RS10560	0.15	-0.6
86,617	+		BBR_RS10560	0.16	-0.7
86,619	-		BBR_RS10560	0.17	-1.2
86,655	+		BBR_RS10560	0.23	-0.6
86,655	+		BBR_RS10560	0.23	+2.0
86,663	-		BBR_RS10560	0.24	-0.7
86,663	-		BBR_RS10560	0.24	+0.8
86,663	-		BBR_RS10560	0.24	-0.7
86,664	+		BBR_RS10560	0.25	+1.2
86,664	-		BBR_RS10560	0.25	-0.5
86,665	+		BBR_RS10560	0.25	-1.7
86,665	+		BBR_RS10560	0.25	+2.0
86,669	+		BBR_RS10560	0.25	-1.8
86,670	+		BBR_RS10560	0.26	+0.4
86,672	-		BBR_RS10560	0.26	-1.5
86,673	-		BBR_RS10560	0.26	+1.1
86,678	-		BBR_RS10560	0.27	+1.6
86,678	-		BBR_RS10560	0.27	-1.1
86,685	+		BBR_RS10560	0.28	+0.4
86,687	-		BBR_RS10560	0.29	-0.2
86,719	-		BBR_RS10560	0.34	-2.6
86,724	-		BBR_RS10560	0.35	-1.2
86,728	+		BBR_RS10560	0.36	-0.9
86,728	+		BBR_RS10560	0.36	-1.3
86,733	+		BBR_RS10560	0.37	-1.5
86,733	+		BBR_RS10560	0.37	-1.1
86,734	-		BBR_RS10560	0.37	-0.5
86,741	-		BBR_RS10560	0.38	+0.7
86,747	-		BBR_RS10560	0.39	+1.4
86,760	+		BBR_RS10560	0.41	-1.8
86,760	+		BBR_RS10560	0.41	+0.5
86,785	-		BBR_RS10560	0.46	+1.6
86,785	-		BBR_RS10560	0.46	-1.1
86,789	+		BBR_RS10560	0.46	-0.4
86,794	+		BBR_RS10560	0.47	-0.9
86,796	+		BBR_RS10560	0.48	+1.1
86,797	-		BBR_RS10560	0.48	-1.2
86,798	-		BBR_RS10560	0.48	-1.4
86,809	+		BBR_RS10560	0.50	-0.5
86,814	+		BBR_RS10560	0.51	-1.0
86,816	+		BBR_RS10560	0.51	-0.8
86,816	+		BBR_RS10560	0.51	+0.3
86,817	-		BBR_RS10560	0.51	+0.7
86,822	-		BBR_RS10560	0.52	-2.5
86,824	-		BBR_RS10560	0.53	-1.0
86,824	-		BBR_RS10560	0.53	-0.7
86,827	+		BBR_RS10560	0.53	-0.5
86,835	-		BBR_RS10560	0.55	+0.5
86,835	-		BBR_RS10560	0.55	-0.7
86,844	-		BBR_RS10560	0.56	+0.4
86,852	-		BBR_RS10560	0.58	-0.4
86,853	+		BBR_RS10560	0.58	-2.8
86,861	-		BBR_RS10560	0.59	+2.2
86,880	+		BBR_RS10560	0.62	+2.2
86,880	+		BBR_RS10560	0.62	+0.6
86,884	-		BBR_RS10560	0.63	-1.0
86,905	-		BBR_RS10560	0.67	-1.9
86,912	+		BBR_RS10560	0.68	+0.8
86,938	+		BBR_RS10560	0.73	-1.1
86,946	-		BBR_RS10560	0.74	-0.7
86,948	+		BBR_RS10560	0.74	-1.8
86,960	+		BBR_RS10560	0.76	+3.2
86,978	+		BBR_RS10560	0.80	+0.2
87,045	-				-1.7
87,045	-				-1.6
87,096	+				+0.5
87,096	+				-0.7
87,096	+				+0.4
87,102	+				+3.8
87,110	-				+0.2
87,115	-				-1.5
87,180	-				+1.2
87,221	+				-1.2
87,221	+				-1.9
87,221	+				-2.0
87,223	+				-1.3
87,223	+				-0.7
87,229	-				+1.4
87,229	-				-2.9
87,229	-				-1.3
87,231	-				+2.6
87,231	-				+0.7
87,231	-				+1.1
87,231	-				-1.9
87,231	-				+1.8
87,231	-				+1.2
87,241	-				-0.2
87,244	+				-0.2
87,403	+				-3.1
87,403	-				-0.9
87,403	-				+1.6
87,408	+				-1.4
87,411	-				-2.8
87,428	+				-1.9
87,429	+				-0.5
87,434	-				-2.0
87,436	-				-3.3
87,443	+				-1.8
87,443	+				-1.5
87,443	+				-2.8
87,443	+				-1.7
87,443	+				-2.6
87,443	+				-1.9
87,443	+				-1.3
87,443	+				-2.7
87,443	+				-0.1
87,445	+				+0.6
87,451	-				+1.0
87,451	-				-0.2
87,451	-				+0.1
87,451	-				-2.5
87,451	-				-2.3
87,451	-				-0.3
87,451	-				-1.9
87,451	-				-0.9
87,487	-				+0.7
87,487	-				+1.3
87,491	+				-1.1
87,491	+				-2.3
87,491	+				-1.0
87,493	-				+0.6
87,499	-				+2.0
87,501	+				-2.1
87,501	+				-0.6
87,512	+				-2.2
87,512	+				-1.6
87,520	-				-0.6
87,520	-				-1.0
87,520	-				-0.7
87,520	-				-1.7
87,551	+				-2.2
87,551	+				-2.1
87,563	+		BBR_RS10565	0.10	-0.4
87,568	+		BBR_RS10565	0.10	-2.5
87,571	-		BBR_RS10565	0.11	+0.4
87,571	-		BBR_RS10565	0.11	-2.3
87,573	+		BBR_RS10565	0.11	-2.6
87,573	+		BBR_RS10565	0.11	+0.8
87,575	+		BBR_RS10565	0.11	-1.6
87,575	+		BBR_RS10565	0.11	-1.5
87,575	+		BBR_RS10565	0.11	-1.1
87,575	+		BBR_RS10565	0.11	-3.4
87,575	+		BBR_RS10565	0.11	+1.1
87,575	+		BBR_RS10565	0.11	+0.5
87,575	+		BBR_RS10565	0.11	-1.4
87,575	+		BBR_RS10565	0.11	-1.0
87,575	+		BBR_RS10565	0.11	-0.3
87,580	+		BBR_RS10565	0.11	-1.7
87,580	+		BBR_RS10565	0.11	+1.0
87,581	-		BBR_RS10565	0.11	+0.5
87,581	-		BBR_RS10565	0.11	-2.1
87,581	-		BBR_RS10565	0.11	-2.2
87,583	-		BBR_RS10565	0.11	-1.6
87,583	-		BBR_RS10565	0.11	-1.5
87,583	-		BBR_RS10565	0.11	-0.9
87,583	-		BBR_RS10565	0.11	-0.5
87,583	-		BBR_RS10565	0.11	+0.0
87,583	-		BBR_RS10565	0.11	-0.9
87,583	-		BBR_RS10565	0.11	+1.2
87,585	+		BBR_RS10565	0.11	-1.6
87,585	+		BBR_RS10565	0.11	-1.3
87,598	-		BBR_RS10565	0.12	-1.8
87,607	-		BBR_RS10565	0.12	-3.0
87,612	+		BBR_RS10565	0.12	+0.8
87,627	-		BBR_RS10565	0.13	-1.6
87,627	-		BBR_RS10565	0.13	-1.0
87,627	-		BBR_RS10565	0.13	-1.4
87,633	-		BBR_RS10565	0.13	-1.0
87,639	-		BBR_RS10565	0.13	-1.1
87,639	-		BBR_RS10565	0.13	-1.6
87,646	-		BBR_RS10565	0.14	-1.1
87,664	-		BBR_RS10565	0.14	-1.1
87,666	+		BBR_RS10565	0.14	-1.2
87,669	-		BBR_RS10565	0.15	-1.9
87,677	+		BBR_RS10565	0.15	-1.7
87,725	+		BBR_RS10565	0.17	-2.0
87,725	+		BBR_RS10565	0.17	-2.1
87,746	-		BBR_RS10565	0.18	-1.8
87,746	-		BBR_RS10565	0.18	-2.5
87,756	+		BBR_RS10565	0.18	-2.1
87,756	+		BBR_RS10565	0.18	+2.4
87,766	-		BBR_RS10565	0.19	+1.9
87,805	-		BBR_RS10565	0.20	-0.0
87,806	+		BBR_RS10565	0.20	-3.2
87,806	+		BBR_RS10565	0.20	-0.6
87,806	+		BBR_RS10565	0.20	-0.7
87,814	-		BBR_RS10565	0.21	-0.4
87,814	-		BBR_RS10565	0.21	-2.4
87,822	-		BBR_RS10565	0.21	-0.6
87,843	-		BBR_RS10565	0.22	-1.9
87,848	+		BBR_RS10565	0.22	-2.4
87,858	+		BBR_RS10565	0.22	-0.0
87,860	+		BBR_RS10565	0.22	-2.1
87,866	-		BBR_RS10565	0.23	-2.9
87,866	-		BBR_RS10565	0.23	-1.0
87,866	-		BBR_RS10565	0.23	-0.6
87,868	-		BBR_RS10565	0.23	-2.5
87,879	+		BBR_RS10565	0.23	+0.0
87,887	-		BBR_RS10565	0.23	-1.0
87,887	-		BBR_RS10565	0.23	+0.5
87,917	+		BBR_RS10565	0.25	-2.0
87,923	+		BBR_RS10565	0.25	-0.5
87,926	-		BBR_RS10565	0.25	-0.3
87,926	-		BBR_RS10565	0.25	-2.1
87,933	-		BBR_RS10565	0.25	+0.5
87,933	-		BBR_RS10565	0.25	+0.0
87,935	+		BBR_RS10565	0.25	-1.9
87,935	+		BBR_RS10565	0.25	-1.3
87,935	+		BBR_RS10565	0.25	-0.2
87,935	+		BBR_RS10565	0.25	-1.5
87,935	+		BBR_RS10565	0.25	-0.8
87,935	+		BBR_RS10565	0.25	-2.4
87,940	+		BBR_RS10565	0.26	-2.0
87,940	+		BBR_RS10565	0.26	-0.4
87,940	+		BBR_RS10565	0.26	-1.6
87,943	-		BBR_RS10565	0.26	+0.6
87,943	-		BBR_RS10565	0.26	-1.4
87,943	-		BBR_RS10565	0.26	-2.1
87,943	-		BBR_RS10565	0.26	-3.0
87,943	-		BBR_RS10565	0.26	-0.7
87,962	+		BBR_RS10565	0.27	-3.3
87,962	+		BBR_RS10565	0.27	-0.7
87,962	+		BBR_RS10565	0.27	-3.5
87,962	+		BBR_RS10565	0.27	-1.5
87,964	+		BBR_RS10565	0.27	+0.8
87,970	-		BBR_RS10565	0.27	-3.1
87,972	+		BBR_RS10565	0.27	-1.7
87,980	-		BBR_RS10565	0.27	-1.7
87,980	-		BBR_RS10565	0.27	-0.4
87,980	-		BBR_RS10565	0.27	-0.7
87,988	-		BBR_RS10565	0.28	-1.0
87,995	+		BBR_RS10565	0.28	+0.5
87,995	+		BBR_RS10565	0.28	-1.8
88,001	-		BBR_RS10565	0.28	-1.9
88,003	+		BBR_RS10565	0.28	-2.1
88,003	+		BBR_RS10565	0.28	+0.1
88,003	+		BBR_RS10565	0.28	-2.1
88,003	+		BBR_RS10565	0.28	+0.6
88,003	+		BBR_RS10565	0.28	-2.2
88,003	+		BBR_RS10565	0.28	+1.3
88,003	+		BBR_RS10565	0.28	-1.1
88,011	-		BBR_RS10565	0.29	-1.3
88,011	-		BBR_RS10565	0.29	-1.1
88,018	-		BBR_RS10565	0.29	-0.3
88,018	-		BBR_RS10565	0.29	-1.7
88,018	-		BBR_RS10565	0.29	-1.5
88,025	+		BBR_RS10565	0.29	-0.6
88,027	+		BBR_RS10565	0.29	-2.6
88,033	-		BBR_RS10565	0.29	-1.7
88,036	+		BBR_RS10565	0.30	-2.2
88,046	+		BBR_RS10565	0.30	-1.1
88,046	+		BBR_RS10565	0.30	-1.9
88,051	+		BBR_RS10565	0.30	-2.5
88,051	+		BBR_RS10565	0.30	-1.2
88,051	+		BBR_RS10565	0.30	-2.6
88,051	+		BBR_RS10565	0.30	-0.6
88,051	+		BBR_RS10565	0.30	-1.9
88,051	+		BBR_RS10565	0.30	-2.2
88,054	-		BBR_RS10565	0.30	-1.5
88,059	-		BBR_RS10565	0.31	-1.1
88,059	-		BBR_RS10565	0.31	-0.6
88,059	-		BBR_RS10565	0.31	+2.3
88,059	-		BBR_RS10565	0.31	+0.3
88,059	-		BBR_RS10565	0.31	-1.8
88,073	-		BBR_RS10565	0.31	-0.7
88,073	-		BBR_RS10565	0.31	-2.3
88,075	-		BBR_RS10565	0.31	-1.4
88,075	-		BBR_RS10565	0.31	+1.1
88,078	-		BBR_RS10565	0.31	-0.8
88,086	-		BBR_RS10565	0.32	-1.1
88,091	+		BBR_RS10565	0.32	-1.9
88,091	+		BBR_RS10565	0.32	-0.6
88,091	+		BBR_RS10565	0.32	-1.4
88,091	+		BBR_RS10565	0.32	+0.2