Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19545

Experiment: cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
2,168,205	-		BBR_RS19540	0.49	+1.4
2,168,205	-		BBR_RS19540	0.49	+1.1
2,168,255	-		BBR_RS19540	0.53	+2.0
2,168,257	-		BBR_RS19540	0.53	+1.9
2,168,304	+		BBR_RS19540	0.57	+1.4
2,168,305	-		BBR_RS19540	0.57	+2.4
2,168,312	-		BBR_RS19540	0.57	+1.6
2,168,312	-		BBR_RS19540	0.57	+1.0
2,168,338	+		BBR_RS19540	0.59	+2.6
2,168,354	-		BBR_RS19540	0.60	+2.7
2,168,473	-		BBR_RS19540	0.69	+1.7
2,168,496	+		BBR_RS19540	0.71	+3.1
2,168,504	-		BBR_RS19540	0.72	+2.0
2,168,526	+		BBR_RS19540	0.73	+1.9
2,168,650	-		BBR_RS19540	0.83	+2.1
2,168,806	-				+1.6
2,168,808	+				+2.4
2,168,871	+				+0.5
2,168,907	+				-0.9
2,168,907	+				-1.2
2,168,915	-				-2.3
2,168,932	+				-0.5
2,168,932	+				+0.5
2,168,935	+				+1.0
2,168,957	-				+0.6
2,168,957	-				-0.0
2,168,981	-				+1.1
2,168,983	-				-0.3
2,168,996	-				-0.7
2,168,996	-				-0.6
2,169,003	+				+1.1
2,169,003	+				+1.0
2,169,011	-				-2.6
2,169,025	+				+0.6
2,169,026	+				+0.4
2,169,026	+				-1.4
2,169,034	-				+0.5
2,169,046	-				-1.8
2,169,063	+				-2.2
2,169,070	-				+1.7
2,169,075	-				+0.5
2,169,083	-				+0.0
2,169,102	-				-1.2
2,169,108	+				-0.7
2,169,108	+				-0.2
2,169,108	+				+1.4
2,169,108	+				-1.6
2,169,108	+				-0.6
2,169,108	+				-2.0
2,169,113	+				-0.4
2,169,116	-				+0.2
2,169,127	+		BBR_RS19545	0.12	-0.2
2,169,169	+		BBR_RS19545	0.20	+1.1
2,169,181	-		BBR_RS19545	0.23	-0.4
2,169,182	-		BBR_RS19545	0.23	+1.8
2,169,182	-		BBR_RS19545	0.23	-1.6
2,169,182	-		BBR_RS19545	0.23	-1.2
2,169,182	-		BBR_RS19545	0.23	+0.1
2,169,186	-		BBR_RS19545	0.24	+1.0
2,169,193	+		BBR_RS19545	0.25	+0.1
2,169,194	-		BBR_RS19545	0.25	-1.6
2,169,216	-		BBR_RS19545	0.30	+0.1
2,169,217	-		BBR_RS19545	0.30	+0.3
2,169,230	+		BBR_RS19545	0.33	-0.3
2,169,260	-		BBR_RS19545	0.39	-0.1
2,169,287	+		BBR_RS19545	0.44	-0.1
2,169,287	-		BBR_RS19545	0.44	-0.1
2,169,290	-		BBR_RS19545	0.45	-0.6
2,169,290	-		BBR_RS19545	0.45	+1.3
2,169,290	-		BBR_RS19545	0.45	+0.1
2,169,292	-		BBR_RS19545	0.45	+0.4
2,169,295	-		BBR_RS19545	0.46	-0.4
2,169,295	-		BBR_RS19545	0.46	+0.2
2,169,313	+		BBR_RS19545	0.49	-1.2
2,169,318	+		BBR_RS19545	0.50	+0.5
2,169,318	+		BBR_RS19545	0.50	-1.6
2,169,326	-		BBR_RS19545	0.52	-2.5
2,169,326	-		BBR_RS19545	0.52	-1.1
2,169,328	-		BBR_RS19545	0.52	-0.6
2,169,338	+		BBR_RS19545	0.54	-1.5
2,169,339	+		BBR_RS19545	0.55	-0.7
2,169,346	-		BBR_RS19545	0.56	+0.7
2,169,348	+		BBR_RS19545	0.56	-0.4
2,169,348	+		BBR_RS19545	0.56	-0.0
2,169,373	+		BBR_RS19545	0.61	-2.2
2,169,374	-		BBR_RS19545	0.62	+0.6
2,169,391	-		BBR_RS19545	0.65	+0.9
2,169,444	+		BBR_RS19545	0.76	-0.6
2,169,457	+		BBR_RS19545	0.78	-0.2
2,169,460	+		BBR_RS19545	0.79	-1.4
2,169,460	+		BBR_RS19545	0.79	-0.8
2,169,460	+		BBR_RS19545	0.79	-0.1
2,169,460	+		BBR_RS19545	0.79	-0.5
2,169,460	+		BBR_RS19545	0.79	-0.9
2,169,460	+		BBR_RS19545	0.79	+0.4
2,169,460	+		BBR_RS19545	0.79	-2.8
2,169,462	+		BBR_RS19545	0.79	+0.7
2,169,463	-		BBR_RS19545	0.80	-1.3
2,169,463	-		BBR_RS19545	0.80	+0.5
2,169,468	-		BBR_RS19545	0.81	-0.3
2,169,468	-		BBR_RS19545	0.81	+0.6
2,169,468	-		BBR_RS19545	0.81	-0.2
2,169,483	+		BBR_RS19545	0.84	-1.4
2,169,483	+		BBR_RS19545	0.84	-0.8
2,169,483	+		BBR_RS19545	0.84	-0.1
2,169,483	+		BBR_RS19545	0.84	-0.3
2,169,483	+		BBR_RS19545	0.84	+0.0
2,169,483	+		BBR_RS19545	0.84	-0.2
2,169,491	-		BBR_RS19545	0.85	-0.8
2,169,507	+		BBR_RS19545	0.88	+0.6
2,169,518	+				+1.2
2,169,526	-				-0.9
2,169,526	-				-0.3
2,169,533	-				+1.1
2,169,533	-				-1.2
2,169,533	-				+0.4
2,169,584	+				+1.0
2,169,604	-				+0.4
2,169,611	+		BBR_RS19550	0.10	+0.2
2,169,613	-		BBR_RS19550	0.11	+2.4
2,169,617	+		BBR_RS19550	0.11	-0.4
2,169,618	+		BBR_RS19550	0.12	+0.9
2,169,618	+		BBR_RS19550	0.12	-1.2
2,169,624	+		BBR_RS19550	0.13	+0.5
2,169,629	+		BBR_RS19550	0.14	-0.2
2,169,644	-		BBR_RS19550	0.17	-1.7
2,169,665	+		BBR_RS19550	0.21	-1.2
2,169,666	-		BBR_RS19550	0.21	-2.4
2,169,673	-		BBR_RS19550	0.22	-0.5
2,169,680	-		BBR_RS19550	0.24	+1.0
2,169,699	+		BBR_RS19550	0.28	-0.6
2,169,707	-		BBR_RS19550	0.29	+1.6
2,169,738	-		BBR_RS19550	0.35	+0.4
2,169,744	+		BBR_RS19550	0.37	+0.3
2,169,744	+		BBR_RS19550	0.37	+0.4
2,169,744	+		BBR_RS19550	0.37	-1.5
2,169,762	-		BBR_RS19550	0.40	+0.7
2,169,762	-		BBR_RS19550	0.40	-0.3
2,169,769	+		BBR_RS19550	0.41	-0.5
2,169,769	+		BBR_RS19550	0.41	-0.2
2,169,769	+		BBR_RS19550	0.41	+0.9
2,169,772	-		BBR_RS19550	0.42	-0.3
2,169,803	+		BBR_RS19550	0.48	+1.1
2,169,803	+		BBR_RS19550	0.48	+0.7
2,169,811	-		BBR_RS19550	0.50	+0.1
2,169,811	-		BBR_RS19550	0.50	+1.4
2,169,812	-		BBR_RS19550	0.50	+0.1
2,169,820	+		BBR_RS19550	0.52	-0.8
2,169,820	-		BBR_RS19550	0.52	+1.2
2,169,839	+		BBR_RS19550	0.55	-0.1
2,169,839	+		BBR_RS19550	0.55	-1.1
2,169,839	+		BBR_RS19550	0.55	-0.5
2,169,839	+		BBR_RS19550	0.55	-0.7
2,169,844	+		BBR_RS19550	0.56	-1.1
2,169,844	+		BBR_RS19550	0.56	-2.0
2,169,844	+		BBR_RS19550	0.56	-0.5
2,169,844	+		BBR_RS19550	0.56	+0.3
2,169,847	-		BBR_RS19550	0.57	-0.9
2,169,847	-		BBR_RS19550	0.57	-0.8
2,169,847	-		BBR_RS19550	0.57	-1.5
2,169,852	-		BBR_RS19550	0.58	-1.1
2,169,852	-		BBR_RS19550	0.58	+1.0
2,169,852	-		BBR_RS19550	0.58	-1.6
2,169,852	-		BBR_RS19550	0.58	-0.8
2,169,852	-		BBR_RS19550	0.58	+0.1
2,169,852	-		BBR_RS19550	0.58	+0.3
2,169,857	-		BBR_RS19550	0.59	+0.4
2,169,864	+		BBR_RS19550	0.60	+2.6
2,169,864	+		BBR_RS19550	0.60	+0.3
2,169,864	+		BBR_RS19550	0.60	-1.9
2,169,864	+		BBR_RS19550	0.60	-1.0
2,169,872	-		BBR_RS19550	0.62	+0.8
2,169,872	-		BBR_RS19550	0.62	+1.3
2,169,884	+		BBR_RS19550	0.64	-0.2
2,169,894	+		BBR_RS19550	0.66	-0.7
2,169,917	-		BBR_RS19550	0.71	+0.5
2,169,919	+		BBR_RS19550	0.71	+0.3
2,169,919	+		BBR_RS19550	0.71	+0.8
2,169,947	-		BBR_RS19550	0.77	-0.2
2,169,951	-		BBR_RS19550	0.78	-0.1
2,169,956	+		BBR_RS19550	0.79	+0.8
2,169,956	+		BBR_RS19550	0.79	+0.4
2,169,973	-		BBR_RS19550	0.82	-1.3
2,169,975	+		BBR_RS19550	0.82	+0.5
2,169,977	+		BBR_RS19550	0.83	-2.2
2,169,978	+		BBR_RS19550	0.83	+0.4
2,169,978	+		BBR_RS19550	0.83	+0.5
2,170,000	+		BBR_RS19550	0.87	-0.7
2,170,008	-		BBR_RS19550	0.89	+0.2
2,170,008	-		BBR_RS19550	0.89	+0.2
2,170,019	+				+0.4
2,170,019	+				+0.8
2,170,022	+				+1.6
2,170,027	-				-1.4
2,170,027	-				+0.8
2,170,030	-				+1.3
2,170,039	+				-0.3
2,170,040	-				-2.0
2,170,077	+				-0.4
2,170,085	-				+0.6
2,170,109	+				-1.1
2,170,122	+				-1.3
2,170,122	+				+1.6
2,170,132	+				-0.4
2,170,132	+				-0.7
2,170,132	-				-1.4
2,170,140	-				+0.1
2,170,140	-				+0.4
2,170,142	+				-0.9
2,170,150	-				-0.2
2,170,150	-				+0.2
2,170,162	+				-1.7
2,170,165	-				+0.0
2,170,165	-				+1.6
2,170,170	-				+1.2
2,170,170	-				+1.5
2,170,170	-				+1.7
2,170,170	-				-1.4
2,170,172	+				-2.2
2,170,172	+				-1.6
2,170,175	-				+1.2
2,170,175	-				+0.9
2,170,183	+				-2.3
2,170,193	+				+1.2
2,170,193	-				-1.5
2,170,218	+				-1.4
2,170,224	+				-1.5
2,170,224	+				-0.2
2,170,224	+				-2.5
2,170,232	-				-0.7
2,170,232	-				-1.8
2,170,232	-				-2.1
2,170,232	-				-0.5
2,170,232	-				+0.7
2,170,250	-				-1.7
2,170,252	-				-1.3
2,170,259	+				-0.3
2,170,260	+				+0.1
2,170,260	+				+1.1
2,170,260	+				-0.8
2,170,268	-				-0.4
2,170,268	-				-1.3
2,170,268	-				-1.9
2,170,273	+				-0.1
2,170,273	+				-2.1
2,170,273	+				-1.1
2,170,273	+				-0.9
2,170,278	+				-2.1
2,170,281	-				-1.5
2,170,281	-				+0.1
2,170,285	+				-0.8
2,170,285	+				+0.5
2,170,285	+				-1.1
2,170,285	+				-0.9
2,170,285	+				-1.4
2,170,285	+				-2.4
2,170,285	+				+0.9
2,170,290	+				-2.6
2,170,293	-				-0.9
2,170,293	-				-2.0
2,170,293	-				-2.5
2,170,293	-				-2.4
2,170,293	-				-0.9
2,170,293	-				-1.2
2,170,300	+				+0.7
2,170,308	+				-1.4
2,170,308	-				-2.6
2,170,327	+		BBR_RS19555	0.10	-1.9
2,170,327	+		BBR_RS19555	0.10	-1.2
2,170,327	+		BBR_RS19555	0.10	+0.1
2,170,335	-		BBR_RS19555	0.11	-0.8
2,170,335	-		BBR_RS19555	0.11	-1.1
2,170,335	-		BBR_RS19555	0.11	-0.7
2,170,335	-		BBR_RS19555	0.11	+0.2
2,170,335	-		BBR_RS19555	0.11	-0.4
2,170,335	-		BBR_RS19555	0.11	-1.1
2,170,376	+		BBR_RS19555	0.13	-0.5
2,170,399	+		BBR_RS19555	0.15	+0.1
2,170,399	+		BBR_RS19555	0.15	-0.4
2,170,407	-		BBR_RS19555	0.15	-1.7
2,170,407	-		BBR_RS19555	0.15	-0.3
2,170,407	-		BBR_RS19555	0.15	-1.6
2,170,408	+		BBR_RS19555	0.15	-1.8
2,170,408	+		BBR_RS19555	0.15	+2.7
2,170,410	+		BBR_RS19555	0.15	-2.0
2,170,413	+		BBR_RS19555	0.16	-0.9
2,170,413	+		BBR_RS19555	0.16	-1.3
2,170,418	-		BBR_RS19555	0.16	-2.8
2,170,421	-		BBR_RS19555	0.16	-2.2
2,170,432	+		BBR_RS19555	0.17	-1.4
2,170,432	+		BBR_RS19555	0.17	-0.6
2,170,445	+		BBR_RS19555	0.18	-1.0
2,170,447	+		BBR_RS19555	0.18	-0.8
2,170,447	+		BBR_RS19555	0.18	+0.2
2,170,447	+		BBR_RS19555	0.18	+0.0
2,170,449	+		BBR_RS19555	0.18	-0.7
2,170,449	+		BBR_RS19555	0.18	-1.8
2,170,453	-		BBR_RS19555	0.18	-1.8
2,170,453	-		BBR_RS19555	0.18	-0.2
2,170,454	+		BBR_RS19555	0.18	-1.0
2,170,454	+		BBR_RS19555	0.18	-1.0
2,170,454	+		BBR_RS19555	0.18	-3.1
2,170,454	+		BBR_RS19555	0.18	-1.8
2,170,454	+		BBR_RS19555	0.18	-0.3
2,170,454	+		BBR_RS19555	0.18	-0.0
2,170,454	+		BBR_RS19555	0.18	+1.5
2,170,455	-		BBR_RS19555	0.18	-0.7
2,170,457	-		BBR_RS19555	0.18	-1.4
2,170,459	+		BBR_RS19555	0.18	+0.9
2,170,459	+		BBR_RS19555	0.18	-1.3
2,170,459	+		BBR_RS19555	0.18	-2.5
2,170,459	+		BBR_RS19555	0.18	-1.6
2,170,464	+		BBR_RS19555	0.19	-1.3
2,170,464	+		BBR_RS19555	0.19	-1.3
2,170,464	+		BBR_RS19555	0.19	+1.3
2,170,467	-		BBR_RS19555	0.19	+0.2
2,170,467	-		BBR_RS19555	0.19	-2.5
2,170,472	-		BBR_RS19555	0.19	-1.9
2,170,472	-		BBR_RS19555	0.19	-0.4
2,170,485	-		BBR_RS19555	0.20	-2.3
2,170,502	+		BBR_RS19555	0.21	-1.8
2,170,502	+		BBR_RS19555	0.21	+0.5
2,170,504	+		BBR_RS19555	0.21	-0.1
2,170,504	+		BBR_RS19555	0.21	-1.3
2,170,504	+		BBR_RS19555	0.21	-2.5
2,170,504	+		BBR_RS19555	0.21	-2.0
2,170,504	+		BBR_RS19555	0.21	+0.2
2,170,510	-		BBR_RS19555	0.22	-1.7
2,170,512	-		BBR_RS19555	0.22	-1.5
2,170,512	-		BBR_RS19555	0.22	-0.6
2,170,512	-		BBR_RS19555	0.22	+1.0
2,170,515	-		BBR_RS19555	0.22	-2.3
2,170,518	+		BBR_RS19555	0.22	+0.3
2,170,540	+		BBR_RS19555	0.23	+0.0
2,170,540	+		BBR_RS19555	0.23	-0.9
2,170,540	+		BBR_RS19555	0.23	-1.6
2,170,540	+		BBR_RS19555	0.23	+0.3
2,170,540	+		BBR_RS19555	0.23	-0.9
2,170,540	+		BBR_RS19555	0.23	-1.3
2,170,540	+		BBR_RS19555	0.23	-2.0
2,170,540	+		BBR_RS19555	0.23	-1.7
2,170,548	-		BBR_RS19555	0.24	+0.5
2,170,548	-		BBR_RS19555	0.24	-1.5