Experiment: cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12130 and BBR_RS12135 are separated by 78 nucleotides BBR_RS12135 and BBR_RS12140 are separated by 72 nucleotides
BBR_RS12130: BBR_RS12130 - sulfite exporter TauE/SafE family protein, at 469,959 to 470,762
_RS12130
BBR_RS12135: BBR_RS12135 - anaerobic sulfatase maturase, at 470,841 to 472,133
_RS12135
BBR_RS12140: BBR_RS12140 - LacI family transcriptional regulator, at 472,206 to 473,267
_RS12140
Position (kb) 470
471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 469.841 kb on - strand at 469.852 kb on + strand at 469.854 kb on + strand at 469.854 kb on + strand at 469.862 kb on - strand at 469.871 kb on + strand at 469.903 kb on - strand at 469.913 kb on + strand at 469.913 kb on + strand at 469.945 kb on + strand at 469.946 kb on - strand at 469.951 kb on - strand at 469.979 kb on + strand at 469.981 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.056 kb on - strand, within BBR_RS12130 at 470.071 kb on + strand, within BBR_RS12130 at 470.071 kb on + strand, within BBR_RS12130 at 470.079 kb on - strand, within BBR_RS12130 at 470.084 kb on - strand, within BBR_RS12130 at 470.089 kb on - strand, within BBR_RS12130 at 470.091 kb on + strand, within BBR_RS12130 at 470.091 kb on - strand, within BBR_RS12130 at 470.150 kb on - strand, within BBR_RS12130 at 470.156 kb on + strand, within BBR_RS12130 at 470.159 kb on - strand, within BBR_RS12130 at 470.200 kb on + strand, within BBR_RS12130 at 470.263 kb on + strand, within BBR_RS12130 at 470.290 kb on - strand, within BBR_RS12130 at 470.301 kb on - strand, within BBR_RS12130 at 470.341 kb on + strand, within BBR_RS12130 at 470.342 kb on - strand, within BBR_RS12130 at 470.342 kb on - strand, within BBR_RS12130 at 470.374 kb on + strand, within BBR_RS12130 at 470.374 kb on + strand, within BBR_RS12130 at 470.382 kb on - strand, within BBR_RS12130 at 470.406 kb on + strand, within BBR_RS12130 at 470.417 kb on + strand, within BBR_RS12130 at 470.424 kb on - strand, within BBR_RS12130 at 470.425 kb on - strand, within BBR_RS12130 at 470.425 kb on - strand, within BBR_RS12130 at 470.441 kb on + strand, within BBR_RS12130 at 470.441 kb on + strand, within BBR_RS12130 at 470.446 kb on + strand, within BBR_RS12130 at 470.451 kb on + strand, within BBR_RS12130 at 470.454 kb on - strand, within BBR_RS12130 at 470.459 kb on - strand, within BBR_RS12130 at 470.463 kb on - strand, within BBR_RS12130 at 470.463 kb on - strand, within BBR_RS12130 at 470.468 kb on - strand, within BBR_RS12130 at 470.481 kb on + strand, within BBR_RS12130 at 470.488 kb on - strand, within BBR_RS12130 at 470.488 kb on - strand, within BBR_RS12130 at 470.498 kb on + strand, within BBR_RS12130 at 470.507 kb on - strand, within BBR_RS12130 at 470.523 kb on - strand, within BBR_RS12130 at 470.564 kb on - strand, within BBR_RS12130 at 470.623 kb on - strand, within BBR_RS12130 at 470.623 kb on - strand, within BBR_RS12130 at 470.648 kb on + strand, within BBR_RS12130 at 470.651 kb on - strand, within BBR_RS12130 at 470.655 kb on - strand, within BBR_RS12130 at 470.656 kb on + strand, within BBR_RS12130 at 470.669 kb on - strand, within BBR_RS12130 at 470.669 kb on - strand, within BBR_RS12130 at 470.669 kb on - strand, within BBR_RS12130 at 470.686 kb on - strand at 470.781 kb on + strand at 470.789 kb on - strand at 470.791 kb on - strand at 470.798 kb on + strand at 470.811 kb on - strand at 470.847 kb on - strand at 470.847 kb on - strand at 470.862 kb on + strand at 470.869 kb on - strand at 470.909 kb on + strand at 470.917 kb on - strand at 470.923 kb on + strand at 470.928 kb on + strand at 470.928 kb on + strand at 470.936 kb on - strand at 470.943 kb on - strand at 470.943 kb on - strand at 470.943 kb on - strand at 470.965 kb on - strand at 470.969 kb on + strand at 470.972 kb on - strand, within BBR_RS12135 at 470.972 kb on - strand, within BBR_RS12135 at 470.975 kb on + strand, within BBR_RS12135 at 470.994 kb on - strand, within BBR_RS12135 at 471.018 kb on - strand, within BBR_RS12135 at 471.032 kb on + strand, within BBR_RS12135 at 471.040 kb on - strand, within BBR_RS12135 at 471.046 kb on + strand, within BBR_RS12135 at 471.054 kb on - strand, within BBR_RS12135 at 471.062 kb on + strand, within BBR_RS12135 at 471.152 kb on - strand, within BBR_RS12135 at 471.152 kb on - strand, within BBR_RS12135 at 471.175 kb on - strand, within BBR_RS12135 at 471.207 kb on + strand, within BBR_RS12135 at 471.215 kb on - strand, within BBR_RS12135 at 471.261 kb on + strand, within BBR_RS12135 at 471.269 kb on - strand, within BBR_RS12135 at 471.276 kb on + strand, within BBR_RS12135 at 471.288 kb on - strand, within BBR_RS12135 at 471.307 kb on + strand, within BBR_RS12135 at 471.312 kb on + strand, within BBR_RS12135 at 471.314 kb on - strand, within BBR_RS12135 at 471.401 kb on + strand, within BBR_RS12135 at 471.401 kb on + strand, within BBR_RS12135 at 471.403 kb on - strand, within BBR_RS12135 at 471.406 kb on + strand, within BBR_RS12135 at 471.435 kb on + strand, within BBR_RS12135 at 471.472 kb on + strand, within BBR_RS12135 at 471.508 kb on + strand, within BBR_RS12135 at 471.508 kb on + strand, within BBR_RS12135 at 471.547 kb on - strand, within BBR_RS12135 at 471.576 kb on + strand, within BBR_RS12135 at 471.581 kb on + strand, within BBR_RS12135 at 471.581 kb on + strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.589 kb on - strand, within BBR_RS12135 at 471.616 kb on + strand, within BBR_RS12135 at 471.623 kb on + strand, within BBR_RS12135 at 471.623 kb on + strand, within BBR_RS12135 at 471.624 kb on - strand, within BBR_RS12135 at 471.624 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.631 kb on - strand, within BBR_RS12135 at 471.646 kb on - strand, within BBR_RS12135 at 471.673 kb on + strand, within BBR_RS12135 at 471.673 kb on + strand, within BBR_RS12135 at 471.679 kb on - strand, within BBR_RS12135 at 471.681 kb on - strand, within BBR_RS12135 at 471.687 kb on + strand, within BBR_RS12135 at 471.687 kb on + strand, within BBR_RS12135 at 471.716 kb on + strand, within BBR_RS12135 at 471.722 kb on - strand, within BBR_RS12135 at 471.729 kb on - strand, within BBR_RS12135 at 471.736 kb on - strand, within BBR_RS12135 at 471.885 kb on - strand, within BBR_RS12135 at 471.895 kb on - strand, within BBR_RS12135 at 471.920 kb on + strand, within BBR_RS12135 at 471.928 kb on + strand, within BBR_RS12135 at 471.936 kb on - strand, within BBR_RS12135 at 472.028 kb on - strand at 472.061 kb on + strand at 472.140 kb on - strand at 472.175 kb on - strand at 472.186 kb on - strand at 472.193 kb on + strand at 472.193 kb on + strand at 472.201 kb on - strand at 472.203 kb on + strand at 472.212 kb on - strand at 472.213 kb on - strand at 472.215 kb on + strand at 472.359 kb on + strand, within BBR_RS12140 at 472.364 kb on + strand, within BBR_RS12140 at 472.367 kb on - strand, within BBR_RS12140 at 472.367 kb on - strand, within BBR_RS12140 at 472.367 kb on - strand, within BBR_RS12140 at 472.367 kb on - strand, within BBR_RS12140 at 472.367 kb on - strand, within BBR_RS12140 at 472.372 kb on - strand, within BBR_RS12140 at 472.372 kb on - strand, within BBR_RS12140 at 472.372 kb on - strand, within BBR_RS12140 at 472.372 kb on - strand, within BBR_RS12140 at 472.389 kb on - strand, within BBR_RS12140 at 472.489 kb on - strand, within BBR_RS12140 at 472.494 kb on - strand, within BBR_RS12140 at 472.508 kb on - strand, within BBR_RS12140 at 472.649 kb on - strand, within BBR_RS12140 at 472.675 kb on - strand, within BBR_RS12140 at 472.716 kb on - strand, within BBR_RS12140 at 472.743 kb on - strand, within BBR_RS12140 at 472.743 kb on - strand, within BBR_RS12140 at 472.763 kb on - strand, within BBR_RS12140 at 472.773 kb on - strand, within BBR_RS12140 at 472.778 kb on - strand, within BBR_RS12140 at 472.778 kb on - strand, within BBR_RS12140 at 472.778 kb on - strand, within BBR_RS12140 at 472.778 kb on - strand, within BBR_RS12140 at 472.778 kb on - strand, within BBR_RS12140 at 472.811 kb on - strand, within BBR_RS12140 at 472.854 kb on - strand, within BBR_RS12140 at 472.854 kb on - strand, within BBR_RS12140 at 472.890 kb on - strand, within BBR_RS12140 at 472.978 kb on - strand, within BBR_RS12140 at 472.985 kb on - strand, within BBR_RS12140 at 472.985 kb on - strand, within BBR_RS12140 at 473.073 kb on - strand, within BBR_RS12140 at 473.087 kb on - strand, within BBR_RS12140 at 473.101 kb on - strand, within BBR_RS12140 at 473.101 kb on - strand, within BBR_RS12140 at 473.106 kb on - strand, within BBR_RS12140 at 473.124 kb on - strand, within BBR_RS12140
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 469,841 - -0.8 469,852 + +0.0 469,854 + -0.4 469,854 + -0.3 469,862 - +1.2 469,871 + +0.4 469,903 - +1.9 469,913 + -0.3 469,913 + -0.2 469,945 + +1.1 469,946 - -0.6 469,951 - -0.0 469,979 + +0.2 469,981 + -0.4 470,013 + +0.9 470,013 + +0.8 470,013 + +0.6 470,013 + +0.0 470,056 - BBR_RS12130 0.12 -1.0 470,071 + BBR_RS12130 0.14 -0.3 470,071 + BBR_RS12130 0.14 -1.1 470,079 - BBR_RS12130 0.15 -1.7 470,084 - BBR_RS12130 0.16 +0.8 470,089 - BBR_RS12130 0.16 -1.4 470,091 + BBR_RS12130 0.16 -1.4 470,091 - BBR_RS12130 0.16 +1.3 470,150 - BBR_RS12130 0.24 -0.8 470,156 + BBR_RS12130 0.25 -0.4 470,159 - BBR_RS12130 0.25 +1.5 470,200 + BBR_RS12130 0.30 +1.4 470,263 + BBR_RS12130 0.38 +0.0 470,290 - BBR_RS12130 0.41 +1.3 470,301 - BBR_RS12130 0.43 +1.2 470,341 + BBR_RS12130 0.48 -0.2 470,342 - BBR_RS12130 0.48 +0.4 470,342 - BBR_RS12130 0.48 -0.1 470,374 + BBR_RS12130 0.52 +0.6 470,374 + BBR_RS12130 0.52 +0.5 470,382 - BBR_RS12130 0.53 +0.1 470,406 + BBR_RS12130 0.56 +1.7 470,417 + BBR_RS12130 0.57 +0.7 470,424 - BBR_RS12130 0.58 -1.0 470,425 - BBR_RS12130 0.58 -1.0 470,425 - BBR_RS12130 0.58 -0.5 470,441 + BBR_RS12130 0.60 -0.7 470,441 + BBR_RS12130 0.60 +0.0 470,446 + BBR_RS12130 0.61 -0.2 470,451 + BBR_RS12130 0.61 -1.5 470,454 - BBR_RS12130 0.62 -1.8 470,459 - BBR_RS12130 0.62 +0.2 470,463 - BBR_RS12130 0.63 +2.3 470,463 - BBR_RS12130 0.63 +1.2 470,468 - BBR_RS12130 0.63 +1.2 470,481 + BBR_RS12130 0.65 -1.5 470,488 - BBR_RS12130 0.66 -0.7 470,488 - BBR_RS12130 0.66 -0.6 470,498 + BBR_RS12130 0.67 +0.3 470,507 - BBR_RS12130 0.68 +1.1 470,523 - BBR_RS12130 0.70 -0.4 470,564 - BBR_RS12130 0.75 +2.2 470,623 - BBR_RS12130 0.83 +1.3 470,623 - BBR_RS12130 0.83 +0.2 470,648 + BBR_RS12130 0.86 +0.4 470,651 - BBR_RS12130 0.86 +1.7 470,655 - BBR_RS12130 0.87 -0.3 470,656 + BBR_RS12130 0.87 +0.7 470,669 - BBR_RS12130 0.88 +1.4 470,669 - BBR_RS12130 0.88 +0.8 470,669 - BBR_RS12130 0.88 -0.1 470,686 - -1.0 470,781 + +0.8 470,789 - +1.0 470,791 - +1.6 470,798 + +0.6 470,811 - +2.0 470,847 - -1.3 470,847 - -2.1 470,862 + -1.1 470,869 - +0.7 470,909 + +0.4 470,917 - +1.0 470,923 + -0.4 470,928 + +0.9 470,928 + +0.1 470,936 - -1.5 470,943 - -0.2 470,943 - +0.7 470,943 - -0.3 470,965 - +0.8 470,969 + +0.3 470,972 - BBR_RS12135 0.10 +1.1 470,972 - BBR_RS12135 0.10 -0.7 470,975 + BBR_RS12135 0.10 -0.3 470,994 - BBR_RS12135 0.12 -0.6 471,018 - BBR_RS12135 0.14 +0.5 471,032 + BBR_RS12135 0.15 +0.6 471,040 - BBR_RS12135 0.15 +0.1 471,046 + BBR_RS12135 0.16 -0.6 471,054 - BBR_RS12135 0.16 -1.4 471,062 + BBR_RS12135 0.17 +2.3 471,152 - BBR_RS12135 0.24 +0.5 471,152 - BBR_RS12135 0.24 +1.0 471,175 - BBR_RS12135 0.26 +0.1 471,207 + BBR_RS12135 0.28 -2.1 471,215 - BBR_RS12135 0.29 +0.9 471,261 + BBR_RS12135 0.32 +2.5 471,269 - BBR_RS12135 0.33 -0.2 471,276 + BBR_RS12135 0.34 -0.3 471,288 - BBR_RS12135 0.35 -0.6 471,307 + BBR_RS12135 0.36 +0.8 471,312 + BBR_RS12135 0.36 +0.2 471,314 - BBR_RS12135 0.37 +0.7 471,401 + BBR_RS12135 0.43 -1.9 471,401 + BBR_RS12135 0.43 -0.1 471,403 - BBR_RS12135 0.43 +0.2 471,406 + BBR_RS12135 0.44 +0.0 471,435 + BBR_RS12135 0.46 -0.1 471,472 + BBR_RS12135 0.49 -0.8 471,508 + BBR_RS12135 0.52 -0.2 471,508 + BBR_RS12135 0.52 +1.2 471,547 - BBR_RS12135 0.55 -1.3 471,576 + BBR_RS12135 0.57 -0.5 471,581 + BBR_RS12135 0.57 -0.5 471,581 + BBR_RS12135 0.57 -0.2 471,589 - BBR_RS12135 0.58 -0.7 471,589 - BBR_RS12135 0.58 +1.0 471,589 - BBR_RS12135 0.58 +0.3 471,589 - BBR_RS12135 0.58 +0.2 471,589 - BBR_RS12135 0.58 -2.4 471,589 - BBR_RS12135 0.58 -1.9 471,616 + BBR_RS12135 0.60 -0.3 471,623 + BBR_RS12135 0.60 -0.1 471,623 + BBR_RS12135 0.60 +0.2 471,624 - BBR_RS12135 0.61 -0.7 471,624 - BBR_RS12135 0.61 -1.3 471,631 - BBR_RS12135 0.61 -0.2 471,631 - BBR_RS12135 0.61 -0.5 471,631 - BBR_RS12135 0.61 +0.3 471,631 - BBR_RS12135 0.61 -0.4 471,631 - BBR_RS12135 0.61 +0.2 471,631 - BBR_RS12135 0.61 +0.5 471,646 - BBR_RS12135 0.62 +1.0 471,673 + BBR_RS12135 0.64 -0.3 471,673 + BBR_RS12135 0.64 -0.3 471,679 - BBR_RS12135 0.65 -1.2 471,681 - BBR_RS12135 0.65 -0.1 471,687 + BBR_RS12135 0.65 +1.4 471,687 + BBR_RS12135 0.65 -0.2 471,716 + BBR_RS12135 0.68 +1.3 471,722 - BBR_RS12135 0.68 -1.3 471,729 - BBR_RS12135 0.69 -0.0 471,736 - BBR_RS12135 0.69 +0.3 471,885 - BBR_RS12135 0.81 -1.3 471,895 - BBR_RS12135 0.82 +0.7 471,920 + BBR_RS12135 0.83 -2.1 471,928 + BBR_RS12135 0.84 +1.4 471,936 - BBR_RS12135 0.85 +0.3 472,028 - -2.0 472,061 + -0.7 472,140 - -0.1 472,175 - +0.5 472,186 - -1.9 472,193 + -0.3 472,193 + -0.2 472,201 - +2.3 472,203 + +0.9 472,212 - +0.5 472,213 - -0.6 472,215 + -1.1 472,359 + BBR_RS12140 0.14 +1.0 472,364 + BBR_RS12140 0.15 +1.0 472,367 - BBR_RS12140 0.15 -1.1 472,367 - BBR_RS12140 0.15 -0.6 472,367 - BBR_RS12140 0.15 +0.5 472,367 - BBR_RS12140 0.15 -0.7 472,367 - BBR_RS12140 0.15 +1.2 472,372 - BBR_RS12140 0.16 -1.2 472,372 - BBR_RS12140 0.16 -0.6 472,372 - BBR_RS12140 0.16 +0.2 472,372 - BBR_RS12140 0.16 -1.1 472,389 - BBR_RS12140 0.17 -0.1 472,489 - BBR_RS12140 0.27 +2.1 472,494 - BBR_RS12140 0.27 +0.3 472,508 - BBR_RS12140 0.28 +0.3 472,649 - BBR_RS12140 0.42 +0.2 472,675 - BBR_RS12140 0.44 +0.5 472,716 - BBR_RS12140 0.48 -0.3 472,743 - BBR_RS12140 0.51 +0.0 472,743 - BBR_RS12140 0.51 -1.0 472,763 - BBR_RS12140 0.52 -3.2 472,773 - BBR_RS12140 0.53 -2.1 472,778 - BBR_RS12140 0.54 -0.4 472,778 - BBR_RS12140 0.54 -0.8 472,778 - BBR_RS12140 0.54 -0.1 472,778 - BBR_RS12140 0.54 -0.2 472,778 - BBR_RS12140 0.54 -0.4 472,811 - BBR_RS12140 0.57 -0.6 472,854 - BBR_RS12140 0.61 +0.3 472,854 - BBR_RS12140 0.61 +1.1 472,890 - BBR_RS12140 0.64 -1.2 472,978 - BBR_RS12140 0.73 -1.8 472,985 - BBR_RS12140 0.73 +0.1 472,985 - BBR_RS12140 0.73 +0.0 473,073 - BBR_RS12140 0.82 -0.6 473,087 - BBR_RS12140 0.83 -1.5 473,101 - BBR_RS12140 0.84 +1.0 473,101 - BBR_RS12140 0.84 -1.0 473,106 - BBR_RS12140 0.85 +1.3 473,124 - BBR_RS12140 0.86 -0.9
Or see this region's nucleotide sequence