Experiment: cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12120 and BBR_RS12125 are separated by 131 nucleotides BBR_RS12125 and BBR_RS12130 are separated by 427 nucleotides
BBR_RS12120: BBR_RS12120 - aspartate ammonia-lyase, at 467,808 to 469,241
_RS12120
BBR_RS12125: BBR_RS12125 - transposase, at 469,373 to 469,531
_RS12125
BBR_RS12130: BBR_RS12130 - sulfite exporter TauE/SafE family protein, at 469,959 to 470,762
_RS12130
Position (kb) 469
470 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 468.373 kb on + strand, within BBR_RS12120 at 468.402 kb on - strand, within BBR_RS12120 at 468.402 kb on - strand, within BBR_RS12120 at 468.402 kb on - strand, within BBR_RS12120 at 468.404 kb on - strand, within BBR_RS12120 at 468.437 kb on + strand, within BBR_RS12120 at 468.450 kb on - strand, within BBR_RS12120 at 468.463 kb on + strand, within BBR_RS12120 at 468.463 kb on + strand, within BBR_RS12120 at 468.471 kb on - strand, within BBR_RS12120 at 468.471 kb on - strand, within BBR_RS12120 at 468.538 kb on - strand, within BBR_RS12120 at 468.547 kb on + strand, within BBR_RS12120 at 468.548 kb on + strand, within BBR_RS12120 at 468.555 kb on - strand, within BBR_RS12120 at 468.564 kb on + strand, within BBR_RS12120 at 468.564 kb on + strand, within BBR_RS12120 at 468.572 kb on + strand, within BBR_RS12120 at 468.572 kb on - strand, within BBR_RS12120 at 468.572 kb on - strand, within BBR_RS12120 at 468.598 kb on + strand, within BBR_RS12120 at 468.616 kb on - strand, within BBR_RS12120 at 468.639 kb on + strand, within BBR_RS12120 at 468.668 kb on - strand, within BBR_RS12120 at 468.670 kb on - strand, within BBR_RS12120 at 468.685 kb on + strand, within BBR_RS12120 at 468.685 kb on + strand, within BBR_RS12120 at 468.726 kb on - strand, within BBR_RS12120 at 468.726 kb on - strand, within BBR_RS12120 at 468.760 kb on - strand, within BBR_RS12120 at 468.768 kb on - strand, within BBR_RS12120 at 468.768 kb on - strand, within BBR_RS12120 at 468.770 kb on + strand, within BBR_RS12120 at 468.793 kb on - strand, within BBR_RS12120 at 468.800 kb on + strand, within BBR_RS12120 at 468.931 kb on + strand, within BBR_RS12120 at 468.934 kb on - strand, within BBR_RS12120 at 468.936 kb on + strand, within BBR_RS12120 at 468.939 kb on - strand, within BBR_RS12120 at 468.941 kb on + strand, within BBR_RS12120 at 468.949 kb on - strand, within BBR_RS12120 at 468.960 kb on - strand, within BBR_RS12120 at 468.995 kb on + strand, within BBR_RS12120 at 469.000 kb on - strand, within BBR_RS12120 at 469.009 kb on + strand, within BBR_RS12120 at 469.009 kb on + strand, within BBR_RS12120 at 469.023 kb on - strand, within BBR_RS12120 at 469.065 kb on - strand, within BBR_RS12120 at 469.065 kb on - strand, within BBR_RS12120 at 469.070 kb on + strand, within BBR_RS12120 at 469.078 kb on - strand, within BBR_RS12120 at 469.117 kb on + strand at 469.135 kb on - strand at 469.159 kb on - strand at 469.206 kb on - strand at 469.243 kb on + strand at 469.249 kb on + strand at 469.249 kb on + strand at 469.273 kb on + strand at 469.275 kb on + strand at 469.275 kb on + strand at 469.278 kb on + strand at 469.318 kb on + strand at 469.318 kb on + strand at 469.326 kb on - strand at 469.339 kb on - strand at 469.339 kb on - strand at 469.344 kb on - strand at 469.365 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.370 kb on + strand at 469.378 kb on - strand at 469.382 kb on + strand at 469.382 kb on + strand at 469.389 kb on - strand, within BBR_RS12125 at 469.390 kb on - strand, within BBR_RS12125 at 469.391 kb on + strand, within BBR_RS12125 at 469.391 kb on + strand, within BBR_RS12125 at 469.396 kb on + strand, within BBR_RS12125 at 469.425 kb on - strand, within BBR_RS12125 at 469.440 kb on - strand, within BBR_RS12125 at 469.445 kb on - strand, within BBR_RS12125 at 469.458 kb on + strand, within BBR_RS12125 at 469.458 kb on + strand, within BBR_RS12125 at 469.462 kb on + strand, within BBR_RS12125 at 469.462 kb on + strand, within BBR_RS12125 at 469.466 kb on - strand, within BBR_RS12125 at 469.481 kb on + strand, within BBR_RS12125 at 469.481 kb on + strand, within BBR_RS12125 at 469.488 kb on + strand, within BBR_RS12125 at 469.488 kb on + strand, within BBR_RS12125 at 469.489 kb on - strand, within BBR_RS12125 at 469.519 kb on - strand at 469.520 kb on + strand at 469.527 kb on + strand at 469.532 kb on + strand at 469.532 kb on + strand at 469.540 kb on - strand at 469.550 kb on - strand at 469.550 kb on - strand at 469.551 kb on - strand at 469.605 kb on + strand at 469.613 kb on - strand at 469.688 kb on + strand at 469.688 kb on + strand at 469.688 kb on + strand at 469.695 kb on + strand at 469.696 kb on - strand at 469.696 kb on - strand at 469.707 kb on + strand at 469.709 kb on + strand at 469.709 kb on + strand at 469.717 kb on - strand at 469.717 kb on - strand at 469.722 kb on - strand at 469.741 kb on + strand at 469.747 kb on + strand at 469.753 kb on - strand at 469.755 kb on + strand at 469.763 kb on - strand at 469.829 kb on - strand at 469.841 kb on - strand at 469.852 kb on + strand at 469.854 kb on + strand at 469.854 kb on + strand at 469.862 kb on - strand at 469.871 kb on + strand at 469.903 kb on - strand at 469.913 kb on + strand at 469.913 kb on + strand at 469.945 kb on + strand at 469.946 kb on - strand at 469.951 kb on - strand at 469.979 kb on + strand at 469.981 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.013 kb on + strand at 470.056 kb on - strand, within BBR_RS12130 at 470.071 kb on + strand, within BBR_RS12130 at 470.071 kb on + strand, within BBR_RS12130 at 470.079 kb on - strand, within BBR_RS12130 at 470.084 kb on - strand, within BBR_RS12130 at 470.089 kb on - strand, within BBR_RS12130 at 470.091 kb on + strand, within BBR_RS12130 at 470.091 kb on - strand, within BBR_RS12130 at 470.150 kb on - strand, within BBR_RS12130 at 470.156 kb on + strand, within BBR_RS12130 at 470.159 kb on - strand, within BBR_RS12130 at 470.200 kb on + strand, within BBR_RS12130 at 470.263 kb on + strand, within BBR_RS12130 at 470.290 kb on - strand, within BBR_RS12130 at 470.301 kb on - strand, within BBR_RS12130 at 470.341 kb on + strand, within BBR_RS12130 at 470.342 kb on - strand, within BBR_RS12130 at 470.342 kb on - strand, within BBR_RS12130 at 470.374 kb on + strand, within BBR_RS12130 at 470.374 kb on + strand, within BBR_RS12130 at 470.382 kb on - strand, within BBR_RS12130 at 470.406 kb on + strand, within BBR_RS12130 at 470.417 kb on + strand, within BBR_RS12130 at 470.424 kb on - strand, within BBR_RS12130 at 470.425 kb on - strand, within BBR_RS12130 at 470.425 kb on - strand, within BBR_RS12130 at 470.441 kb on + strand, within BBR_RS12130 at 470.441 kb on + strand, within BBR_RS12130 at 470.446 kb on + strand, within BBR_RS12130 at 470.451 kb on + strand, within BBR_RS12130 at 470.454 kb on - strand, within BBR_RS12130 at 470.459 kb on - strand, within BBR_RS12130 at 470.463 kb on - strand, within BBR_RS12130 at 470.463 kb on - strand, within BBR_RS12130 at 470.468 kb on - strand, within BBR_RS12130 at 470.481 kb on + strand, within BBR_RS12130 at 470.488 kb on - strand, within BBR_RS12130 at 470.488 kb on - strand, within BBR_RS12130 at 470.498 kb on + strand, within BBR_RS12130 at 470.507 kb on - strand, within BBR_RS12130 at 470.523 kb on - strand, within BBR_RS12130
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 468,373 + BBR_RS12120 0.39 -0.1 468,402 - BBR_RS12120 0.41 +0.2 468,402 - BBR_RS12120 0.41 +0.8 468,402 - BBR_RS12120 0.41 -0.1 468,404 - BBR_RS12120 0.42 +0.3 468,437 + BBR_RS12120 0.44 -0.3 468,450 - BBR_RS12120 0.45 -0.7 468,463 + BBR_RS12120 0.46 -1.8 468,463 + BBR_RS12120 0.46 +0.8 468,471 - BBR_RS12120 0.46 +2.0 468,471 - BBR_RS12120 0.46 -1.1 468,538 - BBR_RS12120 0.51 +0.8 468,547 + BBR_RS12120 0.52 +0.8 468,548 + BBR_RS12120 0.52 +0.4 468,555 - BBR_RS12120 0.52 +0.4 468,564 + BBR_RS12120 0.53 +0.1 468,564 + BBR_RS12120 0.53 -0.6 468,572 + BBR_RS12120 0.53 +0.8 468,572 - BBR_RS12120 0.53 +0.9 468,572 - BBR_RS12120 0.53 -0.5 468,598 + BBR_RS12120 0.55 -1.7 468,616 - BBR_RS12120 0.56 -2.6 468,639 + BBR_RS12120 0.58 +0.4 468,668 - BBR_RS12120 0.60 -1.5 468,670 - BBR_RS12120 0.60 +4.7 468,685 + BBR_RS12120 0.61 +0.8 468,685 + BBR_RS12120 0.61 -1.1 468,726 - BBR_RS12120 0.64 -0.1 468,726 - BBR_RS12120 0.64 -1.1 468,760 - BBR_RS12120 0.66 -1.4 468,768 - BBR_RS12120 0.67 +0.3 468,768 - BBR_RS12120 0.67 +0.3 468,770 + BBR_RS12120 0.67 -0.3 468,793 - BBR_RS12120 0.69 +1.1 468,800 + BBR_RS12120 0.69 -0.4 468,931 + BBR_RS12120 0.78 +0.2 468,934 - BBR_RS12120 0.79 +0.5 468,936 + BBR_RS12120 0.79 -0.6 468,939 - BBR_RS12120 0.79 +0.3 468,941 + BBR_RS12120 0.79 -1.3 468,949 - BBR_RS12120 0.80 +0.4 468,960 - BBR_RS12120 0.80 -0.2 468,995 + BBR_RS12120 0.83 +0.4 469,000 - BBR_RS12120 0.83 +0.6 469,009 + BBR_RS12120 0.84 +0.0 469,009 + BBR_RS12120 0.84 -2.0 469,023 - BBR_RS12120 0.85 -0.0 469,065 - BBR_RS12120 0.88 -0.3 469,065 - BBR_RS12120 0.88 +0.5 469,070 + BBR_RS12120 0.88 +0.6 469,078 - BBR_RS12120 0.89 -0.1 469,117 + -0.1 469,135 - -0.4 469,159 - +0.3 469,206 - -0.7 469,243 + +1.0 469,249 + -0.1 469,249 + -0.8 469,273 + -1.0 469,275 + +0.3 469,275 + -0.3 469,278 + -1.3 469,318 + -1.3 469,318 + -0.8 469,326 - +1.8 469,339 - -2.2 469,339 - -1.4 469,344 - +1.5 469,365 + -1.0 469,370 + -0.2 469,370 + +1.9 469,370 + -0.3 469,370 + -1.5 469,370 + -0.1 469,370 + -1.3 469,370 + -0.3 469,370 + -0.3 469,370 + +1.6 469,378 - -0.4 469,382 + +1.2 469,382 + +0.2 469,389 - BBR_RS12125 0.10 +0.4 469,390 - BBR_RS12125 0.11 -1.6 469,391 + BBR_RS12125 0.11 +0.0 469,391 + BBR_RS12125 0.11 +1.1 469,396 + BBR_RS12125 0.14 +0.7 469,425 - BBR_RS12125 0.33 -0.4 469,440 - BBR_RS12125 0.42 -0.6 469,445 - BBR_RS12125 0.45 -0.8 469,458 + BBR_RS12125 0.53 +0.0 469,458 + BBR_RS12125 0.53 +1.1 469,462 + BBR_RS12125 0.56 +0.7 469,462 + BBR_RS12125 0.56 -1.0 469,466 - BBR_RS12125 0.58 -0.4 469,481 + BBR_RS12125 0.68 +1.3 469,481 + BBR_RS12125 0.68 +0.5 469,488 + BBR_RS12125 0.72 -1.3 469,488 + BBR_RS12125 0.72 -1.5 469,489 - BBR_RS12125 0.73 -0.7 469,519 - +1.7 469,520 + +0.2 469,527 + +1.7 469,532 + -0.6 469,532 + -0.6 469,540 - +1.9 469,550 - -0.6 469,550 - +1.9 469,551 - +0.2 469,605 + +0.6 469,613 - +1.1 469,688 + +2.0 469,688 + +0.9 469,688 + -1.6 469,695 + -0.9 469,696 - +1.2 469,696 - -0.6 469,707 + -1.2 469,709 + +0.3 469,709 + -1.6 469,717 - -0.3 469,717 - -0.3 469,722 - +1.5 469,741 + +0.3 469,747 + +0.7 469,753 - -1.0 469,755 + -2.2 469,763 - -0.1 469,829 - +0.2 469,841 - -0.8 469,852 + +0.0 469,854 + -0.4 469,854 + -0.3 469,862 - +1.2 469,871 + +0.4 469,903 - +1.9 469,913 + -0.3 469,913 + -0.2 469,945 + +1.1 469,946 - -0.6 469,951 - -0.0 469,979 + +0.2 469,981 + -0.4 470,013 + +0.9 470,013 + +0.8 470,013 + +0.6 470,013 + +0.0 470,056 - BBR_RS12130 0.12 -1.0 470,071 + BBR_RS12130 0.14 -0.3 470,071 + BBR_RS12130 0.14 -1.1 470,079 - BBR_RS12130 0.15 -1.7 470,084 - BBR_RS12130 0.16 +0.8 470,089 - BBR_RS12130 0.16 -1.4 470,091 + BBR_RS12130 0.16 -1.4 470,091 - BBR_RS12130 0.16 +1.3 470,150 - BBR_RS12130 0.24 -0.8 470,156 + BBR_RS12130 0.25 -0.4 470,159 - BBR_RS12130 0.25 +1.5 470,200 + BBR_RS12130 0.30 +1.4 470,263 + BBR_RS12130 0.38 +0.0 470,290 - BBR_RS12130 0.41 +1.3 470,301 - BBR_RS12130 0.43 +1.2 470,341 + BBR_RS12130 0.48 -0.2 470,342 - BBR_RS12130 0.48 +0.4 470,342 - BBR_RS12130 0.48 -0.1 470,374 + BBR_RS12130 0.52 +0.6 470,374 + BBR_RS12130 0.52 +0.5 470,382 - BBR_RS12130 0.53 +0.1 470,406 + BBR_RS12130 0.56 +1.7 470,417 + BBR_RS12130 0.57 +0.7 470,424 - BBR_RS12130 0.58 -1.0 470,425 - BBR_RS12130 0.58 -1.0 470,425 - BBR_RS12130 0.58 -0.5 470,441 + BBR_RS12130 0.60 -0.7 470,441 + BBR_RS12130 0.60 +0.0 470,446 + BBR_RS12130 0.61 -0.2 470,451 + BBR_RS12130 0.61 -1.5 470,454 - BBR_RS12130 0.62 -1.8 470,459 - BBR_RS12130 0.62 +0.2 470,463 - BBR_RS12130 0.63 +2.3 470,463 - BBR_RS12130 0.63 +1.2 470,468 - BBR_RS12130 0.63 +1.2 470,481 + BBR_RS12130 0.65 -1.5 470,488 - BBR_RS12130 0.66 -0.7 470,488 - BBR_RS12130 0.66 -0.6 470,498 + BBR_RS12130 0.67 +0.3 470,507 - BBR_RS12130 0.68 +1.1 470,523 - BBR_RS12130 0.70 -0.4
Or see this region's nucleotide sequence