Experiment: cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11760 and BBR_RS11765 overlap by 2 nucleotides BBR_RS11765 and BBR_RS11770 are separated by 77 nucleotides BBR_RS11770 and BBR_RS11775 are separated by 146 nucleotides
BBR_RS11760: BBR_RS11760 - integrase, at 396,195 to 397,658
_RS11760
BBR_RS11765: BBR_RS11765 - IS3 family transposase, at 397,657 to 397,947
_RS11765
BBR_RS11770: BBR_RS11770 - chorismate mutase, at 398,025 to 398,414
_RS11770
BBR_RS11775: BBR_RS11775 - hypothetical protein, at 398,561 to 400,546
_RS11775
Position (kb) 398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.025 kb on - strand, within BBR_RS11760 at 397.039 kb on + strand, within BBR_RS11760 at 397.087 kb on + strand, within BBR_RS11760 at 397.091 kb on + strand, within BBR_RS11760 at 397.124 kb on + strand, within BBR_RS11760 at 397.174 kb on + strand, within BBR_RS11760 at 397.182 kb on + strand, within BBR_RS11760 at 397.182 kb on + strand, within BBR_RS11760 at 397.182 kb on + strand, within BBR_RS11760 at 397.182 kb on + strand, within BBR_RS11760 at 397.190 kb on - strand, within BBR_RS11760 at 397.202 kb on + strand, within BBR_RS11760 at 397.205 kb on - strand, within BBR_RS11760 at 397.223 kb on - strand, within BBR_RS11760 at 397.225 kb on + strand, within BBR_RS11760 at 397.225 kb on + strand, within BBR_RS11760 at 397.255 kb on - strand, within BBR_RS11760 at 397.255 kb on - strand, within BBR_RS11760 at 397.272 kb on + strand, within BBR_RS11760 at 397.292 kb on + strand, within BBR_RS11760 at 397.297 kb on + strand, within BBR_RS11760 at 397.297 kb on + strand, within BBR_RS11760 at 397.305 kb on - strand, within BBR_RS11760 at 397.342 kb on + strand, within BBR_RS11760 at 397.346 kb on - strand, within BBR_RS11760 at 397.405 kb on + strand, within BBR_RS11760 at 397.405 kb on - strand, within BBR_RS11760 at 397.415 kb on + strand, within BBR_RS11760 at 397.433 kb on - strand, within BBR_RS11760 at 397.445 kb on + strand, within BBR_RS11760 at 397.445 kb on + strand, within BBR_RS11760 at 397.453 kb on + strand, within BBR_RS11760 at 397.453 kb on - strand, within BBR_RS11760 at 397.461 kb on - strand, within BBR_RS11760 at 397.469 kb on + strand, within BBR_RS11760 at 397.477 kb on - strand, within BBR_RS11760 at 397.482 kb on - strand, within BBR_RS11760 at 397.482 kb on - strand, within BBR_RS11760 at 397.482 kb on - strand, within BBR_RS11760 at 397.511 kb on - strand, within BBR_RS11760 at 397.516 kb on - strand at 397.520 kb on - strand at 397.522 kb on + strand at 397.530 kb on - strand at 397.530 kb on - strand at 397.556 kb on - strand at 397.556 kb on - strand at 397.556 kb on - strand at 397.564 kb on - strand at 397.571 kb on + strand at 397.592 kb on + strand at 397.592 kb on + strand at 397.602 kb on + strand at 397.602 kb on - strand at 397.626 kb on + strand at 397.636 kb on + strand at 397.636 kb on + strand at 397.638 kb on + strand at 397.644 kb on - strand at 397.644 kb on - strand at 397.651 kb on + strand at 397.651 kb on + strand at 397.659 kb on - strand at 397.670 kb on + strand at 397.684 kb on + strand at 397.692 kb on - strand, within BBR_RS11765 at 397.702 kb on - strand, within BBR_RS11765 at 397.744 kb on + strand, within BBR_RS11765 at 397.750 kb on + strand, within BBR_RS11765 at 397.758 kb on - strand, within BBR_RS11765 at 397.759 kb on - strand, within BBR_RS11765 at 397.761 kb on + strand, within BBR_RS11765 at 397.776 kb on + strand, within BBR_RS11765 at 397.800 kb on + strand, within BBR_RS11765 at 397.800 kb on + strand, within BBR_RS11765 at 397.808 kb on + strand, within BBR_RS11765 at 397.836 kb on + strand, within BBR_RS11765 at 397.836 kb on + strand, within BBR_RS11765 at 397.836 kb on + strand, within BBR_RS11765 at 397.844 kb on - strand, within BBR_RS11765 at 397.844 kb on - strand, within BBR_RS11765 at 397.851 kb on - strand, within BBR_RS11765 at 397.854 kb on + strand, within BBR_RS11765 at 397.856 kb on + strand, within BBR_RS11765 at 397.867 kb on + strand, within BBR_RS11765 at 397.869 kb on - strand, within BBR_RS11765 at 397.883 kb on - strand, within BBR_RS11765 at 397.890 kb on + strand, within BBR_RS11765 at 397.910 kb on + strand, within BBR_RS11765 at 397.918 kb on - strand, within BBR_RS11765 at 397.942 kb on + strand at 397.942 kb on + strand at 397.942 kb on + strand at 397.950 kb on - strand at 397.951 kb on + strand at 397.968 kb on - strand at 397.998 kb on + strand at 398.022 kb on + strand at 398.122 kb on + strand, within BBR_RS11770 at 398.156 kb on + strand, within BBR_RS11770 at 398.171 kb on - strand, within BBR_RS11770 at 398.179 kb on - strand, within BBR_RS11770 at 398.207 kb on + strand, within BBR_RS11770 at 398.215 kb on - strand, within BBR_RS11770 at 398.238 kb on - strand, within BBR_RS11770 at 398.240 kb on + strand, within BBR_RS11770 at 398.248 kb on - strand, within BBR_RS11770 at 398.255 kb on + strand, within BBR_RS11770 at 398.265 kb on - strand, within BBR_RS11770 at 398.276 kb on + strand, within BBR_RS11770 at 398.371 kb on - strand, within BBR_RS11770 at 398.371 kb on - strand, within BBR_RS11770 at 398.380 kb on + strand at 398.395 kb on + strand at 398.418 kb on + strand at 398.422 kb on - strand at 398.473 kb on + strand at 398.473 kb on + strand at 398.493 kb on + strand at 398.496 kb on - strand at 398.503 kb on + strand at 398.503 kb on + strand at 398.511 kb on - strand at 398.511 kb on - strand at 398.515 kb on + strand at 398.525 kb on + strand at 398.539 kb on - strand at 398.539 kb on - strand at 398.540 kb on + strand at 398.576 kb on + strand at 398.576 kb on + strand at 398.586 kb on + strand at 398.589 kb on - strand at 398.589 kb on - strand at 398.594 kb on - strand at 398.594 kb on - strand at 398.597 kb on + strand at 398.604 kb on - strand at 398.610 kb on + strand at 398.656 kb on - strand at 398.682 kb on + strand at 398.688 kb on - strand at 398.688 kb on - strand at 398.690 kb on - strand at 398.693 kb on + strand at 398.706 kb on - strand at 398.712 kb on - strand at 398.719 kb on + strand at 398.719 kb on + strand at 398.755 kb on + strand at 398.805 kb on + strand, within BBR_RS11775 at 398.805 kb on + strand, within BBR_RS11775 at 398.819 kb on + strand, within BBR_RS11775 at 398.852 kb on - strand, within BBR_RS11775 at 398.853 kb on + strand, within BBR_RS11775 at 398.853 kb on + strand, within BBR_RS11775 at 398.854 kb on + strand, within BBR_RS11775 at 398.861 kb on - strand, within BBR_RS11775 at 398.888 kb on + strand, within BBR_RS11775 at 398.893 kb on + strand, within BBR_RS11775 at 398.893 kb on + strand, within BBR_RS11775 at 398.901 kb on - strand, within BBR_RS11775 at 398.901 kb on - strand, within BBR_RS11775 at 398.903 kb on - strand, within BBR_RS11775 at 398.921 kb on + strand, within BBR_RS11775 at 398.924 kb on + strand, within BBR_RS11775 at 398.940 kb on - strand, within BBR_RS11775 at 398.995 kb on + strand, within BBR_RS11775 at 399.003 kb on + strand, within BBR_RS11775 at 399.003 kb on - strand, within BBR_RS11775 at 399.003 kb on - strand, within BBR_RS11775 at 399.076 kb on + strand, within BBR_RS11775 at 399.087 kb on + strand, within BBR_RS11775 at 399.087 kb on + strand, within BBR_RS11775 at 399.095 kb on - strand, within BBR_RS11775 at 399.101 kb on + strand, within BBR_RS11775 at 399.148 kb on - strand, within BBR_RS11775 at 399.162 kb on + strand, within BBR_RS11775 at 399.164 kb on - strand, within BBR_RS11775 at 399.166 kb on + strand, within BBR_RS11775 at 399.166 kb on + strand, within BBR_RS11775 at 399.166 kb on + strand, within BBR_RS11775 at 399.174 kb on - strand, within BBR_RS11775 at 399.174 kb on - strand, within BBR_RS11775 at 399.174 kb on - strand, within BBR_RS11775 at 399.201 kb on + strand, within BBR_RS11775 at 399.210 kb on + strand, within BBR_RS11775 at 399.218 kb on - strand, within BBR_RS11775 at 399.220 kb on - strand, within BBR_RS11775 at 399.229 kb on + strand, within BBR_RS11775 at 399.231 kb on + strand, within BBR_RS11775 at 399.236 kb on + strand, within BBR_RS11775 at 399.236 kb on + strand, within BBR_RS11775 at 399.236 kb on + strand, within BBR_RS11775 at 399.239 kb on - strand, within BBR_RS11775 at 399.239 kb on - strand, within BBR_RS11775 at 399.257 kb on + strand, within BBR_RS11775 at 399.273 kb on - strand, within BBR_RS11775 at 399.283 kb on + strand, within BBR_RS11775 at 399.310 kb on - strand, within BBR_RS11775 at 399.320 kb on - strand, within BBR_RS11775 at 399.326 kb on + strand, within BBR_RS11775 at 399.328 kb on + strand, within BBR_RS11775 at 399.328 kb on + strand, within BBR_RS11775 at 399.360 kb on + strand, within BBR_RS11775 at 399.382 kb on + strand, within BBR_RS11775 at 399.382 kb on + strand, within BBR_RS11775 at 399.390 kb on - strand, within BBR_RS11775 at 399.390 kb on - strand, within BBR_RS11775 at 399.390 kb on - strand, within BBR_RS11775 at 399.390 kb on - strand, within BBR_RS11775 at 399.396 kb on + strand, within BBR_RS11775 at 399.413 kb on - strand, within BBR_RS11775
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 397,025 - BBR_RS11760 0.57 -1.5 397,039 + BBR_RS11760 0.58 -2.5 397,087 + BBR_RS11760 0.61 +0.1 397,091 + BBR_RS11760 0.61 +2.0 397,124 + BBR_RS11760 0.63 -0.3 397,174 + BBR_RS11760 0.67 +0.9 397,182 + BBR_RS11760 0.67 +0.3 397,182 + BBR_RS11760 0.67 +0.4 397,182 + BBR_RS11760 0.67 +1.2 397,182 + BBR_RS11760 0.67 -1.2 397,190 - BBR_RS11760 0.68 -0.2 397,202 + BBR_RS11760 0.69 -1.7 397,205 - BBR_RS11760 0.69 -0.0 397,223 - BBR_RS11760 0.70 -1.1 397,225 + BBR_RS11760 0.70 -2.0 397,225 + BBR_RS11760 0.70 -1.2 397,255 - BBR_RS11760 0.72 -1.1 397,255 - BBR_RS11760 0.72 +0.4 397,272 + BBR_RS11760 0.74 -0.4 397,292 + BBR_RS11760 0.75 -0.4 397,297 + BBR_RS11760 0.75 -1.8 397,297 + BBR_RS11760 0.75 -1.3 397,305 - BBR_RS11760 0.76 +0.1 397,342 + BBR_RS11760 0.78 -0.6 397,346 - BBR_RS11760 0.79 +0.5 397,405 + BBR_RS11760 0.83 +1.0 397,405 - BBR_RS11760 0.83 +0.4 397,415 + BBR_RS11760 0.83 +0.8 397,433 - BBR_RS11760 0.85 -1.5 397,445 + BBR_RS11760 0.85 +0.3 397,445 + BBR_RS11760 0.85 +0.2 397,453 + BBR_RS11760 0.86 -1.8 397,453 - BBR_RS11760 0.86 +0.6 397,461 - BBR_RS11760 0.86 -1.3 397,469 + BBR_RS11760 0.87 +1.0 397,477 - BBR_RS11760 0.88 -0.6 397,482 - BBR_RS11760 0.88 -0.0 397,482 - BBR_RS11760 0.88 -1.7 397,482 - BBR_RS11760 0.88 -0.6 397,511 - BBR_RS11760 0.90 +0.3 397,516 - +1.2 397,520 - -0.2 397,522 + -1.2 397,530 - -0.2 397,530 - +0.0 397,556 - -0.8 397,556 - -1.0 397,556 - -1.1 397,564 - +2.1 397,571 + -0.4 397,592 + +0.4 397,592 + -0.9 397,602 + +1.7 397,602 - -1.9 397,626 + -0.8 397,636 + +0.3 397,636 + -2.0 397,638 + -1.1 397,644 - -0.3 397,644 - +1.0 397,651 + -0.2 397,651 + -1.5 397,659 - -0.2 397,670 + +1.7 397,684 + +1.4 397,692 - BBR_RS11765 0.12 +0.5 397,702 - BBR_RS11765 0.15 +0.8 397,744 + BBR_RS11765 0.30 -0.8 397,750 + BBR_RS11765 0.32 -0.3 397,758 - BBR_RS11765 0.35 -3.2 397,759 - BBR_RS11765 0.35 +0.7 397,761 + BBR_RS11765 0.36 +0.4 397,776 + BBR_RS11765 0.41 -2.1 397,800 + BBR_RS11765 0.49 +0.3 397,800 + BBR_RS11765 0.49 +0.1 397,808 + BBR_RS11765 0.52 -0.3 397,836 + BBR_RS11765 0.62 +1.0 397,836 + BBR_RS11765 0.62 +0.3 397,836 + BBR_RS11765 0.62 -1.3 397,844 - BBR_RS11765 0.64 -1.2 397,844 - BBR_RS11765 0.64 -1.4 397,851 - BBR_RS11765 0.67 -1.0 397,854 + BBR_RS11765 0.68 -1.2 397,856 + BBR_RS11765 0.68 +0.8 397,867 + BBR_RS11765 0.72 -2.7 397,869 - BBR_RS11765 0.73 +0.1 397,883 - BBR_RS11765 0.78 +0.2 397,890 + BBR_RS11765 0.80 +1.4 397,910 + BBR_RS11765 0.87 +0.0 397,918 - BBR_RS11765 0.90 +0.0 397,942 + +0.1 397,942 + -0.5 397,942 + +1.3 397,950 - +0.4 397,951 + -0.7 397,968 - +1.0 397,998 + -1.5 398,022 + -0.4 398,122 + BBR_RS11770 0.25 -1.4 398,156 + BBR_RS11770 0.34 +0.2 398,171 - BBR_RS11770 0.37 -2.4 398,179 - BBR_RS11770 0.39 +0.1 398,207 + BBR_RS11770 0.47 -1.2 398,215 - BBR_RS11770 0.49 +0.1 398,238 - BBR_RS11770 0.55 -0.6 398,240 + BBR_RS11770 0.55 +0.7 398,248 - BBR_RS11770 0.57 +0.0 398,255 + BBR_RS11770 0.59 -0.0 398,265 - BBR_RS11770 0.62 -0.4 398,276 + BBR_RS11770 0.64 -1.4 398,371 - BBR_RS11770 0.89 +0.4 398,371 - BBR_RS11770 0.89 -1.9 398,380 + -0.6 398,395 + +1.7 398,418 + -1.2 398,422 - -0.3 398,473 + +0.2 398,473 + +0.5 398,493 + +2.0 398,496 - -0.5 398,503 + +0.3 398,503 + -1.4 398,511 - +0.4 398,511 - -0.5 398,515 + +1.8 398,525 + +0.3 398,539 - +1.2 398,539 - +0.0 398,540 + -1.0 398,576 + -0.1 398,576 + +0.4 398,586 + -0.6 398,589 - -0.1 398,589 - +0.2 398,594 - +1.5 398,594 - -0.8 398,597 + +0.3 398,604 - +2.2 398,610 + +0.5 398,656 - -1.6 398,682 + +1.7 398,688 - +1.1 398,688 - -1.5 398,690 - +1.3 398,693 + -2.3 398,706 - +0.9 398,712 - -0.9 398,719 + -0.2 398,719 + +1.4 398,755 + -0.7 398,805 + BBR_RS11775 0.12 +1.3 398,805 + BBR_RS11775 0.12 -0.7 398,819 + BBR_RS11775 0.13 +0.6 398,852 - BBR_RS11775 0.15 +0.0 398,853 + BBR_RS11775 0.15 -1.4 398,853 + BBR_RS11775 0.15 +0.0 398,854 + BBR_RS11775 0.15 -0.1 398,861 - BBR_RS11775 0.15 +0.7 398,888 + BBR_RS11775 0.16 -2.0 398,893 + BBR_RS11775 0.17 +1.1 398,893 + BBR_RS11775 0.17 -0.4 398,901 - BBR_RS11775 0.17 +0.4 398,901 - BBR_RS11775 0.17 -0.7 398,903 - BBR_RS11775 0.17 +2.0 398,921 + BBR_RS11775 0.18 +1.2 398,924 + BBR_RS11775 0.18 -0.0 398,940 - BBR_RS11775 0.19 -0.1 398,995 + BBR_RS11775 0.22 -2.1 399,003 + BBR_RS11775 0.22 -0.9 399,003 - BBR_RS11775 0.22 +0.7 399,003 - BBR_RS11775 0.22 +0.6 399,076 + BBR_RS11775 0.26 +0.3 399,087 + BBR_RS11775 0.26 -0.1 399,087 + BBR_RS11775 0.26 -1.5 399,095 - BBR_RS11775 0.27 +0.0 399,101 + BBR_RS11775 0.27 +0.5 399,148 - BBR_RS11775 0.30 -0.5 399,162 + BBR_RS11775 0.30 +0.8 399,164 - BBR_RS11775 0.30 +1.2 399,166 + BBR_RS11775 0.30 -1.4 399,166 + BBR_RS11775 0.30 -0.5 399,166 + BBR_RS11775 0.30 +1.4 399,174 - BBR_RS11775 0.31 +0.3 399,174 - BBR_RS11775 0.31 -0.9 399,174 - BBR_RS11775 0.31 -2.2 399,201 + BBR_RS11775 0.32 -0.5 399,210 + BBR_RS11775 0.33 -1.7 399,218 - BBR_RS11775 0.33 +0.4 399,220 - BBR_RS11775 0.33 +0.7 399,229 + BBR_RS11775 0.34 +0.1 399,231 + BBR_RS11775 0.34 -0.6 399,236 + BBR_RS11775 0.34 +0.1 399,236 + BBR_RS11775 0.34 -0.8 399,236 + BBR_RS11775 0.34 +1.6 399,239 - BBR_RS11775 0.34 +0.3 399,239 - BBR_RS11775 0.34 -0.5 399,257 + BBR_RS11775 0.35 +1.0 399,273 - BBR_RS11775 0.36 +0.8 399,283 + BBR_RS11775 0.36 -0.5 399,310 - BBR_RS11775 0.38 +0.4 399,320 - BBR_RS11775 0.38 +1.3 399,326 + BBR_RS11775 0.39 +0.1 399,328 + BBR_RS11775 0.39 +0.8 399,328 + BBR_RS11775 0.39 -0.5 399,360 + BBR_RS11775 0.40 -0.7 399,382 + BBR_RS11775 0.41 +2.1 399,382 + BBR_RS11775 0.41 -0.4 399,390 - BBR_RS11775 0.42 -1.6 399,390 - BBR_RS11775 0.42 -0.2 399,390 - BBR_RS11775 0.42 +0.6 399,390 - BBR_RS11775 0.42 -0.3 399,396 + BBR_RS11775 0.42 -1.3 399,413 - BBR_RS11775 0.43 +1.3
Or see this region's nucleotide sequence