Experiment: cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11390 and BBR_RS11395 are separated by 2 nucleotides BBR_RS11395 and BBR_RS11400 are separated by 456 nucleotides
BBR_RS11390: BBR_RS11390 - TnpY-like protein, at 306,530 to 308,701
_RS11390
BBR_RS11395: BBR_RS11395 - DNA-binding protein, at 308,704 to 308,898
_RS11395
BBR_RS11400: BBR_RS11400 - integrase, at 309,355 to 311,028
_RS11400
Position (kb) 308
309 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 307.707 kb on - strand, within BBR_RS11390 at 307.708 kb on - strand, within BBR_RS11390 at 307.708 kb on - strand, within BBR_RS11390 at 307.708 kb on - strand, within BBR_RS11390 at 307.708 kb on - strand, within BBR_RS11390 at 307.727 kb on - strand, within BBR_RS11390 at 307.770 kb on + strand, within BBR_RS11390 at 307.783 kb on + strand, within BBR_RS11390 at 307.815 kb on + strand, within BBR_RS11390 at 307.821 kb on - strand, within BBR_RS11390 at 307.830 kb on - strand, within BBR_RS11390 at 307.835 kb on - strand, within BBR_RS11390 at 307.835 kb on - strand, within BBR_RS11390 at 307.840 kb on + strand, within BBR_RS11390 at 307.840 kb on + strand, within BBR_RS11390 at 307.840 kb on - strand, within BBR_RS11390 at 307.902 kb on + strand, within BBR_RS11390 at 307.941 kb on - strand, within BBR_RS11390 at 307.943 kb on + strand, within BBR_RS11390 at 307.952 kb on + strand, within BBR_RS11390 at 307.960 kb on - strand, within BBR_RS11390 at 307.960 kb on - strand, within BBR_RS11390 at 307.960 kb on - strand, within BBR_RS11390 at 307.970 kb on - strand, within BBR_RS11390 at 308.009 kb on + strand, within BBR_RS11390 at 308.017 kb on - strand, within BBR_RS11390 at 308.026 kb on + strand, within BBR_RS11390 at 308.035 kb on - strand, within BBR_RS11390 at 308.035 kb on - strand, within BBR_RS11390 at 308.039 kb on + strand, within BBR_RS11390 at 308.039 kb on + strand, within BBR_RS11390 at 308.051 kb on + strand, within BBR_RS11390 at 308.059 kb on - strand, within BBR_RS11390 at 308.059 kb on - strand, within BBR_RS11390 at 308.064 kb on + strand, within BBR_RS11390 at 308.069 kb on - strand, within BBR_RS11390 at 308.069 kb on - strand, within BBR_RS11390 at 308.074 kb on + strand, within BBR_RS11390 at 308.080 kb on - strand, within BBR_RS11390 at 308.084 kb on + strand, within BBR_RS11390 at 308.097 kb on + strand, within BBR_RS11390 at 308.097 kb on + strand, within BBR_RS11390 at 308.097 kb on + strand, within BBR_RS11390 at 308.097 kb on + strand, within BBR_RS11390 at 308.099 kb on + strand, within BBR_RS11390 at 308.102 kb on - strand, within BBR_RS11390 at 308.105 kb on - strand, within BBR_RS11390 at 308.107 kb on + strand, within BBR_RS11390 at 308.116 kb on + strand, within BBR_RS11390 at 308.124 kb on + strand, within BBR_RS11390 at 308.132 kb on + strand, within BBR_RS11390 at 308.147 kb on + strand, within BBR_RS11390 at 308.153 kb on - strand, within BBR_RS11390 at 308.198 kb on + strand, within BBR_RS11390 at 308.207 kb on + strand, within BBR_RS11390 at 308.215 kb on - strand, within BBR_RS11390 at 308.227 kb on - strand, within BBR_RS11390 at 308.227 kb on - strand, within BBR_RS11390 at 308.246 kb on - strand, within BBR_RS11390 at 308.246 kb on - strand, within BBR_RS11390 at 308.246 kb on - strand, within BBR_RS11390 at 308.247 kb on - strand, within BBR_RS11390 at 308.250 kb on + strand, within BBR_RS11390 at 308.300 kb on - strand, within BBR_RS11390 at 308.326 kb on - strand, within BBR_RS11390 at 308.331 kb on - strand, within BBR_RS11390 at 308.342 kb on + strand, within BBR_RS11390 at 308.417 kb on + strand, within BBR_RS11390 at 308.417 kb on + strand, within BBR_RS11390 at 308.417 kb on + strand, within BBR_RS11390 at 308.417 kb on + strand, within BBR_RS11390 at 308.417 kb on + strand, within BBR_RS11390 at 308.417 kb on + strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.425 kb on - strand, within BBR_RS11390 at 308.454 kb on - strand, within BBR_RS11390 at 308.482 kb on - strand, within BBR_RS11390 at 308.500 kb on - strand at 308.500 kb on - strand at 308.503 kb on + strand at 308.510 kb on + strand at 308.511 kb on - strand at 308.511 kb on - strand at 308.513 kb on + strand at 308.521 kb on - strand at 308.526 kb on - strand at 308.531 kb on - strand at 308.539 kb on + strand at 308.540 kb on + strand at 308.546 kb on + strand at 308.546 kb on + strand at 308.547 kb on - strand at 308.547 kb on - strand at 308.555 kb on - strand at 308.555 kb on - strand at 308.555 kb on - strand at 308.576 kb on + strand at 308.576 kb on + strand at 308.576 kb on + strand at 308.576 kb on + strand at 308.599 kb on + strand at 308.607 kb on - strand at 308.660 kb on + strand at 308.668 kb on - strand at 308.678 kb on - strand at 308.678 kb on - strand at 308.678 kb on - strand at 308.691 kb on - strand at 308.707 kb on + strand at 308.715 kb on - strand at 308.715 kb on - strand at 308.715 kb on - strand at 308.715 kb on - strand at 308.742 kb on - strand, within BBR_RS11395 at 308.742 kb on - strand, within BBR_RS11395 at 308.805 kb on - strand, within BBR_RS11395 at 308.807 kb on + strand, within BBR_RS11395 at 308.807 kb on + strand, within BBR_RS11395 at 308.829 kb on - strand, within BBR_RS11395 at 308.849 kb on + strand, within BBR_RS11395 at 308.904 kb on + strand at 308.905 kb on + strand at 308.920 kb on + strand at 308.925 kb on + strand at 308.928 kb on - strand at 308.928 kb on - strand at 308.963 kb on + strand at 308.972 kb on + strand at 308.974 kb on + strand at 308.977 kb on - strand at 308.982 kb on + strand at 308.982 kb on - strand at 308.987 kb on - strand at 308.989 kb on + strand at 308.992 kb on - strand at 309.050 kb on + strand at 309.050 kb on + strand at 309.085 kb on - strand at 309.085 kb on - strand at 309.106 kb on + strand at 309.204 kb on + strand at 309.204 kb on + strand at 309.214 kb on + strand at 309.220 kb on - strand at 309.234 kb on + strand at 309.239 kb on + strand at 309.242 kb on + strand at 309.242 kb on - strand at 309.244 kb on + strand at 309.244 kb on + strand at 309.244 kb on + strand at 309.252 kb on - strand at 309.252 kb on - strand at 309.288 kb on - strand at 309.288 kb on - strand at 309.307 kb on - strand at 309.307 kb on - strand at 309.330 kb on + strand at 309.330 kb on + strand at 309.342 kb on + strand at 309.350 kb on - strand at 309.351 kb on + strand at 309.351 kb on + strand at 309.352 kb on + strand at 309.352 kb on + strand at 309.377 kb on - strand at 309.386 kb on + strand at 309.386 kb on + strand at 309.394 kb on - strand at 309.394 kb on - strand at 309.394 kb on - strand at 309.400 kb on + strand at 309.401 kb on + strand at 309.414 kb on + strand at 309.414 kb on + strand at 309.414 kb on - strand at 309.414 kb on - strand at 309.415 kb on + strand at 309.442 kb on + strand at 309.449 kb on + strand at 309.449 kb on + strand at 309.457 kb on - strand at 309.473 kb on + strand at 309.480 kb on + strand at 309.480 kb on - strand at 309.481 kb on - strand at 309.486 kb on - strand at 309.496 kb on - strand at 309.502 kb on - strand at 309.502 kb on - strand at 309.540 kb on - strand, within BBR_RS11400 at 309.540 kb on - strand, within BBR_RS11400 at 309.548 kb on + strand, within BBR_RS11400 at 309.548 kb on + strand, within BBR_RS11400 at 309.569 kb on - strand, within BBR_RS11400 at 309.585 kb on + strand, within BBR_RS11400 at 309.585 kb on + strand, within BBR_RS11400 at 309.585 kb on + strand, within BBR_RS11400 at 309.593 kb on - strand, within BBR_RS11400 at 309.593 kb on - strand, within BBR_RS11400 at 309.593 kb on - strand, within BBR_RS11400 at 309.593 kb on - strand, within BBR_RS11400 at 309.598 kb on + strand, within BBR_RS11400 at 309.598 kb on + strand, within BBR_RS11400 at 309.598 kb on + strand, within BBR_RS11400 at 309.606 kb on - strand, within BBR_RS11400 at 309.606 kb on - strand, within BBR_RS11400 at 309.606 kb on - strand, within BBR_RS11400 at 309.606 kb on - strand, within BBR_RS11400 at 309.629 kb on - strand, within BBR_RS11400 at 309.642 kb on + strand, within BBR_RS11400 at 309.642 kb on - strand, within BBR_RS11400 at 309.653 kb on - strand, within BBR_RS11400 at 309.681 kb on - strand, within BBR_RS11400 at 309.690 kb on - strand, within BBR_RS11400 at 309.695 kb on - strand, within BBR_RS11400 at 309.700 kb on - strand, within BBR_RS11400 at 309.763 kb on + strand, within BBR_RS11400 at 309.763 kb on + strand, within BBR_RS11400 at 309.763 kb on + strand, within BBR_RS11400 at 309.763 kb on + strand, within BBR_RS11400 at 309.791 kb on + strand, within BBR_RS11400 at 309.827 kb on + strand, within BBR_RS11400 at 309.835 kb on - strand, within BBR_RS11400 at 309.854 kb on + strand, within BBR_RS11400 at 309.854 kb on + strand, within BBR_RS11400 at 309.854 kb on + strand, within BBR_RS11400 at 309.854 kb on + strand, within BBR_RS11400 at 309.854 kb on - strand, within BBR_RS11400 at 309.862 kb on - strand, within BBR_RS11400 at 309.862 kb on - strand, within BBR_RS11400
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 307,707 - BBR_RS11390 0.54 -0.7 307,708 - BBR_RS11390 0.54 -1.1 307,708 - BBR_RS11390 0.54 -0.4 307,708 - BBR_RS11390 0.54 -0.8 307,708 - BBR_RS11390 0.54 -1.7 307,727 - BBR_RS11390 0.55 -0.2 307,770 + BBR_RS11390 0.57 -1.8 307,783 + BBR_RS11390 0.58 -0.7 307,815 + BBR_RS11390 0.59 +0.0 307,821 - BBR_RS11390 0.59 +1.0 307,830 - BBR_RS11390 0.60 +1.1 307,835 - BBR_RS11390 0.60 -1.7 307,835 - BBR_RS11390 0.60 +0.6 307,840 + BBR_RS11390 0.60 -0.6 307,840 + BBR_RS11390 0.60 -1.3 307,840 - BBR_RS11390 0.60 -2.4 307,902 + BBR_RS11390 0.63 -1.1 307,941 - BBR_RS11390 0.65 +1.9 307,943 + BBR_RS11390 0.65 +0.3 307,952 + BBR_RS11390 0.65 +0.9 307,960 - BBR_RS11390 0.66 -1.2 307,960 - BBR_RS11390 0.66 +0.3 307,960 - BBR_RS11390 0.66 +2.1 307,970 - BBR_RS11390 0.66 +0.4 308,009 + BBR_RS11390 0.68 -0.4 308,017 - BBR_RS11390 0.68 -1.5 308,026 + BBR_RS11390 0.69 -0.3 308,035 - BBR_RS11390 0.69 -0.2 308,035 - BBR_RS11390 0.69 +1.5 308,039 + BBR_RS11390 0.69 -1.1 308,039 + BBR_RS11390 0.69 +0.6 308,051 + BBR_RS11390 0.70 +0.3 308,059 - BBR_RS11390 0.70 -0.4 308,059 - BBR_RS11390 0.70 +1.0 308,064 + BBR_RS11390 0.71 +1.5 308,069 - BBR_RS11390 0.71 +0.4 308,069 - BBR_RS11390 0.71 -0.2 308,074 + BBR_RS11390 0.71 -1.6 308,080 - BBR_RS11390 0.71 -1.2 308,084 + BBR_RS11390 0.72 +0.7 308,097 + BBR_RS11390 0.72 +0.1 308,097 + BBR_RS11390 0.72 +0.4 308,097 + BBR_RS11390 0.72 -0.8 308,097 + BBR_RS11390 0.72 +0.4 308,099 + BBR_RS11390 0.72 +0.0 308,102 - BBR_RS11390 0.72 -1.0 308,105 - BBR_RS11390 0.73 -0.5 308,107 + BBR_RS11390 0.73 -1.0 308,116 + BBR_RS11390 0.73 -0.8 308,124 + BBR_RS11390 0.73 -0.3 308,132 + BBR_RS11390 0.74 -1.2 308,147 + BBR_RS11390 0.74 -0.4 308,153 - BBR_RS11390 0.75 -0.0 308,198 + BBR_RS11390 0.77 +0.2 308,207 + BBR_RS11390 0.77 -0.4 308,215 - BBR_RS11390 0.78 -2.0 308,227 - BBR_RS11390 0.78 +0.0 308,227 - BBR_RS11390 0.78 -0.1 308,246 - BBR_RS11390 0.79 -0.1 308,246 - BBR_RS11390 0.79 -1.3 308,246 - BBR_RS11390 0.79 -0.5 308,247 - BBR_RS11390 0.79 +0.4 308,250 + BBR_RS11390 0.79 +0.4 308,300 - BBR_RS11390 0.81 +0.8 308,326 - BBR_RS11390 0.83 -0.0 308,331 - BBR_RS11390 0.83 +0.3 308,342 + BBR_RS11390 0.83 -1.5 308,417 + BBR_RS11390 0.87 +1.7 308,417 + BBR_RS11390 0.87 +1.7 308,417 + BBR_RS11390 0.87 -0.0 308,417 + BBR_RS11390 0.87 +0.1 308,417 + BBR_RS11390 0.87 +1.0 308,417 + BBR_RS11390 0.87 +2.0 308,425 - BBR_RS11390 0.87 -0.2 308,425 - BBR_RS11390 0.87 -1.5 308,425 - BBR_RS11390 0.87 -1.8 308,425 - BBR_RS11390 0.87 +0.6 308,425 - BBR_RS11390 0.87 +0.9 308,425 - BBR_RS11390 0.87 +1.2 308,425 - BBR_RS11390 0.87 +0.4 308,425 - BBR_RS11390 0.87 -0.8 308,425 - BBR_RS11390 0.87 -2.1 308,425 - BBR_RS11390 0.87 +0.7 308,454 - BBR_RS11390 0.89 +2.3 308,482 - BBR_RS11390 0.90 +0.3 308,500 - +0.3 308,500 - +0.8 308,503 + -0.8 308,510 + +0.4 308,511 - +1.1 308,511 - -1.9 308,513 + +1.0 308,521 - -0.4 308,526 - -0.8 308,531 - +1.8 308,539 + -0.1 308,540 + +1.9 308,546 + +0.2 308,546 + -1.6 308,547 - -0.4 308,547 - +0.3 308,555 - -1.7 308,555 - -0.3 308,555 - +0.7 308,576 + +1.0 308,576 + -1.9 308,576 + +1.7 308,576 + +0.2 308,599 + -1.5 308,607 - +0.9 308,660 + -1.2 308,668 - +1.8 308,678 - +0.6 308,678 - +1.6 308,678 - -0.7 308,691 - -0.2 308,707 + +0.2 308,715 - -1.7 308,715 - -0.6 308,715 - +0.7 308,715 - +0.0 308,742 - BBR_RS11395 0.19 -2.3 308,742 - BBR_RS11395 0.19 -2.5 308,805 - BBR_RS11395 0.52 -0.9 308,807 + BBR_RS11395 0.53 +0.4 308,807 + BBR_RS11395 0.53 -1.0 308,829 - BBR_RS11395 0.64 -0.4 308,849 + BBR_RS11395 0.74 +0.2 308,904 + +0.1 308,905 + +1.3 308,920 + -1.9 308,925 + -0.0 308,928 - -1.0 308,928 - +1.5 308,963 + +1.0 308,972 + -1.1 308,974 + +1.0 308,977 - +0.8 308,982 + -0.1 308,982 - -1.5 308,987 - +0.6 308,989 + +0.9 308,992 - -0.3 309,050 + +1.2 309,050 + +2.4 309,085 - -1.0 309,085 - -1.6 309,106 + -1.0 309,204 + -1.3 309,204 + -0.8 309,214 + -0.9 309,220 - +0.0 309,234 + -1.0 309,239 + -1.4 309,242 + -1.5 309,242 - +1.1 309,244 + +0.3 309,244 + -0.5 309,244 + +1.2 309,252 - -0.7 309,252 - +0.9 309,288 - -0.8 309,288 - -0.9 309,307 - -1.0 309,307 - +0.6 309,330 + -0.1 309,330 + -1.8 309,342 + +1.3 309,350 - +1.9 309,351 + -0.4 309,351 + +0.9 309,352 + +0.2 309,352 + +0.2 309,377 - -2.2 309,386 + -0.4 309,386 + +1.5 309,394 - +0.8 309,394 - -0.4 309,394 - +1.0 309,400 + -1.0 309,401 + +0.2 309,414 + +2.3 309,414 + +0.8 309,414 - -2.1 309,414 - -0.3 309,415 + -0.2 309,442 + +0.9 309,449 + +1.1 309,449 + +0.4 309,457 - -1.2 309,473 + -2.2 309,480 + +0.6 309,480 - +0.7 309,481 - -0.5 309,486 - +1.0 309,496 - +1.3 309,502 - +0.8 309,502 - +0.3 309,540 - BBR_RS11400 0.11 -1.1 309,540 - BBR_RS11400 0.11 +0.9 309,548 + BBR_RS11400 0.12 +0.3 309,548 + BBR_RS11400 0.12 +1.0 309,569 - BBR_RS11400 0.13 +2.8 309,585 + BBR_RS11400 0.14 +1.6 309,585 + BBR_RS11400 0.14 +0.9 309,585 + BBR_RS11400 0.14 +1.4 309,593 - BBR_RS11400 0.14 +0.1 309,593 - BBR_RS11400 0.14 +0.4 309,593 - BBR_RS11400 0.14 +0.6 309,593 - BBR_RS11400 0.14 -1.3 309,598 + BBR_RS11400 0.15 +2.3 309,598 + BBR_RS11400 0.15 +0.6 309,598 + BBR_RS11400 0.15 +1.3 309,606 - BBR_RS11400 0.15 -0.2 309,606 - BBR_RS11400 0.15 +0.4 309,606 - BBR_RS11400 0.15 -0.7 309,606 - BBR_RS11400 0.15 -0.3 309,629 - BBR_RS11400 0.16 +1.2 309,642 + BBR_RS11400 0.17 -1.2 309,642 - BBR_RS11400 0.17 -1.3 309,653 - BBR_RS11400 0.18 +1.3 309,681 - BBR_RS11400 0.19 -1.4 309,690 - BBR_RS11400 0.20 +0.3 309,695 - BBR_RS11400 0.20 -0.8 309,700 - BBR_RS11400 0.21 +1.0 309,763 + BBR_RS11400 0.24 -2.1 309,763 + BBR_RS11400 0.24 -2.0 309,763 + BBR_RS11400 0.24 +1.6 309,763 + BBR_RS11400 0.24 -0.1 309,791 + BBR_RS11400 0.26 +1.1 309,827 + BBR_RS11400 0.28 -1.7 309,835 - BBR_RS11400 0.29 +0.2 309,854 + BBR_RS11400 0.30 +1.3 309,854 + BBR_RS11400 0.30 -1.5 309,854 + BBR_RS11400 0.30 -0.8 309,854 + BBR_RS11400 0.30 -1.7 309,854 - BBR_RS11400 0.30 -0.3 309,862 - BBR_RS11400 0.30 +0.5 309,862 - BBR_RS11400 0.30 +1.6
Or see this region's nucleotide sequence