Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11095

Experiment: cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11090 and BBR_RS11095 are separated by 375 nucleotidesBBR_RS11095 and BBR_RS11100 overlap by 4 nucleotides BBR_RS11090: BBR_RS11090 - IS21 family transposase, at 226,165 to 227,625 _RS11090 BBR_RS11095: BBR_RS11095 - DUF4862 domain-containing protein, at 228,001 to 228,909 _RS11095 BBR_RS11100: BBR_RS11100 - ROK family protein, at 228,906 to 229,913 _RS11100 Position (kb) 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.748 kb on + strandat 227.786 kb on + strandat 227.786 kb on + strandat 227.786 kb on + strandat 227.786 kb on + strandat 227.796 kb on + strandat 227.796 kb on + strandat 227.808 kb on - strandat 227.808 kb on - strandat 227.809 kb on - strandat 227.816 kb on - strandat 227.816 kb on - strandat 227.816 kb on - strandat 227.816 kb on - strandat 227.816 kb on - strandat 227.816 kb on - strandat 227.818 kb on - strandat 227.832 kb on + strandat 227.832 kb on + strandat 227.840 kb on - strandat 227.896 kb on - strandat 227.906 kb on + strandat 227.914 kb on - strandat 227.927 kb on - strandat 227.967 kb on + strandat 227.967 kb on + strandat 227.997 kb on - strandat 227.997 kb on - strandat 228.022 kb on + strandat 228.037 kb on + strandat 228.039 kb on - strandat 228.043 kb on - strandat 228.060 kb on - strandat 228.065 kb on + strandat 228.070 kb on + strandat 228.073 kb on - strandat 228.087 kb on + strandat 228.095 kb on - strand, within BBR_RS11095at 228.095 kb on - strand, within BBR_RS11095at 228.095 kb on - strand, within BBR_RS11095at 228.101 kb on + strand, within BBR_RS11095at 228.101 kb on + strand, within BBR_RS11095at 228.101 kb on + strand, within BBR_RS11095at 228.106 kb on + strand, within BBR_RS11095at 228.106 kb on + strand, within BBR_RS11095at 228.109 kb on - strand, within BBR_RS11095at 228.109 kb on - strand, within BBR_RS11095at 228.111 kb on + strand, within BBR_RS11095at 228.114 kb on - strand, within BBR_RS11095at 228.114 kb on - strand, within BBR_RS11095at 228.114 kb on - strand, within BBR_RS11095at 228.137 kb on + strand, within BBR_RS11095at 228.142 kb on + strand, within BBR_RS11095at 228.146 kb on + strand, within BBR_RS11095at 228.146 kb on + strand, within BBR_RS11095at 228.169 kb on + strand, within BBR_RS11095at 228.169 kb on + strand, within BBR_RS11095at 228.197 kb on - strand, within BBR_RS11095at 228.197 kb on - strand, within BBR_RS11095at 228.204 kb on + strand, within BBR_RS11095at 228.204 kb on + strand, within BBR_RS11095at 228.204 kb on + strand, within BBR_RS11095at 228.204 kb on + strand, within BBR_RS11095at 228.204 kb on + strand, within BBR_RS11095at 228.210 kb on - strand, within BBR_RS11095at 228.212 kb on - strand, within BBR_RS11095at 228.212 kb on - strand, within BBR_RS11095at 228.212 kb on - strand, within BBR_RS11095at 228.217 kb on - strand, within BBR_RS11095at 228.222 kb on + strand, within BBR_RS11095at 228.222 kb on + strand, within BBR_RS11095at 228.232 kb on + strand, within BBR_RS11095at 228.232 kb on + strand, within BBR_RS11095at 228.240 kb on - strand, within BBR_RS11095at 228.244 kb on + strand, within BBR_RS11095at 228.254 kb on + strand, within BBR_RS11095at 228.257 kb on - strand, within BBR_RS11095at 228.278 kb on - strand, within BBR_RS11095at 228.278 kb on - strand, within BBR_RS11095at 228.290 kb on + strand, within BBR_RS11095at 228.298 kb on - strand, within BBR_RS11095at 228.320 kb on + strand, within BBR_RS11095at 228.325 kb on + strand, within BBR_RS11095at 228.325 kb on + strand, within BBR_RS11095at 228.330 kb on + strand, within BBR_RS11095at 228.330 kb on + strand, within BBR_RS11095at 228.333 kb on - strand, within BBR_RS11095at 228.333 kb on - strand, within BBR_RS11095at 228.333 kb on - strand, within BBR_RS11095at 228.338 kb on - strand, within BBR_RS11095at 228.338 kb on - strand, within BBR_RS11095at 228.338 kb on - strand, within BBR_RS11095at 228.338 kb on - strand, within BBR_RS11095at 228.339 kb on - strand, within BBR_RS11095at 228.343 kb on - strand, within BBR_RS11095at 228.343 kb on - strand, within BBR_RS11095at 228.346 kb on + strand, within BBR_RS11095at 228.369 kb on + strand, within BBR_RS11095at 228.376 kb on + strand, within BBR_RS11095at 228.387 kb on + strand, within BBR_RS11095at 228.401 kb on - strand, within BBR_RS11095at 228.401 kb on - strand, within BBR_RS11095at 228.430 kb on + strand, within BBR_RS11095at 228.435 kb on + strand, within BBR_RS11095at 228.438 kb on - strand, within BBR_RS11095at 228.440 kb on + strand, within BBR_RS11095at 228.440 kb on + strand, within BBR_RS11095at 228.446 kb on + strand, within BBR_RS11095at 228.459 kb on - strand, within BBR_RS11095at 228.468 kb on - strand, within BBR_RS11095at 228.482 kb on - strand, within BBR_RS11095at 228.527 kb on + strand, within BBR_RS11095at 228.535 kb on - strand, within BBR_RS11095at 228.535 kb on - strand, within BBR_RS11095at 228.551 kb on + strand, within BBR_RS11095at 228.557 kb on + strand, within BBR_RS11095at 228.559 kb on - strand, within BBR_RS11095at 228.559 kb on - strand, within BBR_RS11095at 228.559 kb on - strand, within BBR_RS11095at 228.569 kb on + strand, within BBR_RS11095at 228.593 kb on - strand, within BBR_RS11095at 228.594 kb on - strand, within BBR_RS11095at 228.609 kb on - strand, within BBR_RS11095at 228.629 kb on - strand, within BBR_RS11095at 228.655 kb on + strand, within BBR_RS11095at 228.656 kb on + strand, within BBR_RS11095at 228.660 kb on + strand, within BBR_RS11095at 228.660 kb on + strand, within BBR_RS11095at 228.660 kb on + strand, within BBR_RS11095at 228.664 kb on - strand, within BBR_RS11095at 228.664 kb on - strand, within BBR_RS11095at 228.664 kb on - strand, within BBR_RS11095at 228.677 kb on + strand, within BBR_RS11095at 228.677 kb on + strand, within BBR_RS11095at 228.685 kb on - strand, within BBR_RS11095at 228.685 kb on - strand, within BBR_RS11095at 228.685 kb on - strand, within BBR_RS11095at 228.690 kb on - strand, within BBR_RS11095at 228.690 kb on - strand, within BBR_RS11095at 228.696 kb on - strand, within BBR_RS11095at 228.701 kb on - strand, within BBR_RS11095at 228.711 kb on - strand, within BBR_RS11095at 228.779 kb on - strand, within BBR_RS11095at 228.804 kb on - strand, within BBR_RS11095at 228.804 kb on - strand, within BBR_RS11095at 228.804 kb on - strand, within BBR_RS11095at 228.808 kb on + strand, within BBR_RS11095at 228.821 kb on - strandat 228.838 kb on + strandat 228.854 kb on + strandat 228.854 kb on + strandat 228.856 kb on + strandat 228.856 kb on + strandat 228.856 kb on + strandat 228.867 kb on + strandat 228.948 kb on + strandat 228.999 kb on - strandat 229.010 kb on + strand, within BBR_RS11100at 229.010 kb on + strand, within BBR_RS11100at 229.010 kb on + strand, within BBR_RS11100at 229.010 kb on + strand, within BBR_RS11100at 229.015 kb on + strand, within BBR_RS11100at 229.023 kb on - strand, within BBR_RS11100at 229.036 kb on - strand, within BBR_RS11100at 229.037 kb on - strand, within BBR_RS11100at 229.037 kb on - strand, within BBR_RS11100at 229.071 kb on - strand, within BBR_RS11100at 229.110 kb on + strand, within BBR_RS11100at 229.111 kb on - strand, within BBR_RS11100at 229.132 kb on - strand, within BBR_RS11100at 229.211 kb on + strand, within BBR_RS11100at 229.211 kb on + strand, within BBR_RS11100at 229.211 kb on + strand, within BBR_RS11100at 229.211 kb on + strand, within BBR_RS11100at 229.219 kb on - strand, within BBR_RS11100at 229.219 kb on - strand, within BBR_RS11100at 229.265 kb on - strand, within BBR_RS11100at 229.268 kb on - strand, within BBR_RS11100at 229.291 kb on - strand, within BBR_RS11100at 229.300 kb on + strand, within BBR_RS11100at 229.306 kb on + strand, within BBR_RS11100at 229.314 kb on - strand, within BBR_RS11100at 229.314 kb on - strand, within BBR_RS11100at 229.314 kb on - strand, within BBR_RS11100at 229.330 kb on - strand, within BBR_RS11100at 229.353 kb on - strand, within BBR_RS11100at 229.357 kb on + strand, within BBR_RS11100at 229.360 kb on - strand, within BBR_RS11100at 229.407 kb on - strand, within BBR_RS11100at 229.409 kb on + strand, within BBR_RS11100at 229.409 kb on + strand, within BBR_RS11100at 229.409 kb on + strand, within BBR_RS11100at 229.415 kb on - strand, within BBR_RS11100at 229.416 kb on + strand, within BBR_RS11100at 229.416 kb on + strand, within BBR_RS11100at 229.417 kb on - strand, within BBR_RS11100at 229.417 kb on - strand, within BBR_RS11100at 229.417 kb on - strand, within BBR_RS11100at 229.432 kb on - strand, within BBR_RS11100at 229.454 kb on - strand, within BBR_RS11100at 229.492 kb on + strand, within BBR_RS11100at 229.502 kb on - strand, within BBR_RS11100at 229.505 kb on + strand, within BBR_RS11100at 229.513 kb on - strand, within BBR_RS11100at 229.513 kb on - strand, within BBR_RS11100at 229.530 kb on + strand, within BBR_RS11100at 229.530 kb on + strand, within BBR_RS11100at 229.538 kb on - strand, within BBR_RS11100at 229.541 kb on + strand, within BBR_RS11100at 229.547 kb on - strand, within BBR_RS11100at 229.588 kb on - strand, within BBR_RS11100at 229.588 kb on - strand, within BBR_RS11100at 229.597 kb on + strand, within BBR_RS11100at 229.605 kb on - strand, within BBR_RS11100at 229.632 kb on + strand, within BBR_RS11100at 229.650 kb on + strand, within BBR_RS11100at 229.655 kb on + strand, within BBR_RS11100at 229.660 kb on + strand, within BBR_RS11100at 229.725 kb on + strand, within BBR_RS11100at 229.749 kb on + strand, within BBR_RS11100at 229.757 kb on - strand, within BBR_RS11100at 229.770 kb on - strand, within BBR_RS11100at 229.770 kb on - strand, within BBR_RS11100at 229.787 kb on - strand, within BBR_RS11100at 229.813 kb on - strandat 229.813 kb on - strandat 229.843 kb on - strandat 229.843 kb on - strandat 229.864 kb on - strandat 229.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse2; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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227,748 + -2.0
227,786 + -0.4
227,786 + +0.9
227,786 + +0.4
227,786 + -0.3
227,796 + -2.0
227,796 + +0.5
227,808 - -0.8
227,808 - -0.2
227,809 - +1.0
227,816 - +0.6
227,816 - -0.0
227,816 - -0.2
227,816 - -1.7
227,816 - -1.4
227,816 - +0.2
227,818 - +1.6
227,832 + +0.0
227,832 + -2.0
227,840 - +0.0
227,896 - -0.7
227,906 + +0.1
227,914 - -1.2
227,927 - +0.1
227,967 + -3.0
227,967 + -1.7
227,997 - -0.0
227,997 - +0.7
228,022 + -0.5
228,037 + -1.1
228,039 - -2.3
228,043 - -0.9
228,060 - -1.0
228,065 + +0.4
228,070 + +0.1
228,073 - -0.6
228,087 + -2.4
228,095 - BBR_RS11095 0.10 -2.0
228,095 - BBR_RS11095 0.10 -1.4
228,095 - BBR_RS11095 0.10 -0.9
228,101 + BBR_RS11095 0.11 -1.7
228,101 + BBR_RS11095 0.11 +0.3
228,101 + BBR_RS11095 0.11 +0.7
228,106 + BBR_RS11095 0.12 -0.0
228,106 + BBR_RS11095 0.12 +0.8
228,109 - BBR_RS11095 0.12 -0.5
228,109 - BBR_RS11095 0.12 -1.5
228,111 + BBR_RS11095 0.12 +0.6
228,114 - BBR_RS11095 0.12 -1.3
228,114 - BBR_RS11095 0.12 -0.8
228,114 - BBR_RS11095 0.12 -0.6
228,137 + BBR_RS11095 0.15 +0.4
228,142 + BBR_RS11095 0.16 -0.7
228,146 + BBR_RS11095 0.16 -2.5
228,146 + BBR_RS11095 0.16 -1.0
228,169 + BBR_RS11095 0.18 -0.8
228,169 + BBR_RS11095 0.18 -0.8
228,197 - BBR_RS11095 0.22 +0.3
228,197 - BBR_RS11095 0.22 +0.3
228,204 + BBR_RS11095 0.22 -1.1
228,204 + BBR_RS11095 0.22 -1.8
228,204 + BBR_RS11095 0.22 +0.1
228,204 + BBR_RS11095 0.22 -0.6
228,204 + BBR_RS11095 0.22 -0.1
228,210 - BBR_RS11095 0.23 -0.9
228,212 - BBR_RS11095 0.23 -0.4
228,212 - BBR_RS11095 0.23 -1.1
228,212 - BBR_RS11095 0.23 -2.1
228,217 - BBR_RS11095 0.24 -1.4
228,222 + BBR_RS11095 0.24 -1.4
228,222 + BBR_RS11095 0.24 +1.2
228,232 + BBR_RS11095 0.25 -2.5
228,232 + BBR_RS11095 0.25 -1.7
228,240 - BBR_RS11095 0.26 -0.8
228,244 + BBR_RS11095 0.27 -1.9
228,254 + BBR_RS11095 0.28 -1.8
228,257 - BBR_RS11095 0.28 -2.5
228,278 - BBR_RS11095 0.30 -1.9
228,278 - BBR_RS11095 0.30 +0.7
228,290 + BBR_RS11095 0.32 -1.5
228,298 - BBR_RS11095 0.33 -2.2
228,320 + BBR_RS11095 0.35 -2.3
228,325 + BBR_RS11095 0.36 -0.7
228,325 + BBR_RS11095 0.36 +0.6
228,330 + BBR_RS11095 0.36 -0.4
228,330 + BBR_RS11095 0.36 +1.7
228,333 - BBR_RS11095 0.37 -1.4
228,333 - BBR_RS11095 0.37 -2.4
228,333 - BBR_RS11095 0.37 -0.3
228,338 - BBR_RS11095 0.37 -1.6
228,338 - BBR_RS11095 0.37 -2.1
228,338 - BBR_RS11095 0.37 +0.1
228,338 - BBR_RS11095 0.37 -1.2
228,339 - BBR_RS11095 0.37 -0.7
228,343 - BBR_RS11095 0.38 +1.0
228,343 - BBR_RS11095 0.38 +0.1
228,346 + BBR_RS11095 0.38 -1.5
228,369 + BBR_RS11095 0.40 -0.8
228,376 + BBR_RS11095 0.41 -1.3
228,387 + BBR_RS11095 0.42 -1.4
228,401 - BBR_RS11095 0.44 -2.1
228,401 - BBR_RS11095 0.44 -0.5
228,430 + BBR_RS11095 0.47 -1.4
228,435 + BBR_RS11095 0.48 +0.3
228,438 - BBR_RS11095 0.48 +0.1
228,440 + BBR_RS11095 0.48 +0.6
228,440 + BBR_RS11095 0.48 -1.7
228,446 + BBR_RS11095 0.49 -2.1
228,459 - BBR_RS11095 0.50 -1.1
228,468 - BBR_RS11095 0.51 -0.3
228,482 - BBR_RS11095 0.53 -2.2
228,527 + BBR_RS11095 0.58 -1.0
228,535 - BBR_RS11095 0.59 -1.0
228,535 - BBR_RS11095 0.59 -0.5
228,551 + BBR_RS11095 0.61 -0.7
228,557 + BBR_RS11095 0.61 -0.9
228,559 - BBR_RS11095 0.61 -0.3
228,559 - BBR_RS11095 0.61 -1.9
228,559 - BBR_RS11095 0.61 -0.2
228,569 + BBR_RS11095 0.62 -0.7
228,593 - BBR_RS11095 0.65 -0.5
228,594 - BBR_RS11095 0.65 -0.9
228,609 - BBR_RS11095 0.67 -1.2
228,629 - BBR_RS11095 0.69 -1.5
228,655 + BBR_RS11095 0.72 -0.6
228,656 + BBR_RS11095 0.72 +0.1
228,660 + BBR_RS11095 0.72 +1.0
228,660 + BBR_RS11095 0.72 -1.5
228,660 + BBR_RS11095 0.72 -1.6
228,664 - BBR_RS11095 0.73 -0.8
228,664 - BBR_RS11095 0.73 -3.3
228,664 - BBR_RS11095 0.73 -0.1
228,677 + BBR_RS11095 0.74 -0.6
228,677 + BBR_RS11095 0.74 -0.7
228,685 - BBR_RS11095 0.75 -0.5
228,685 - BBR_RS11095 0.75 +0.6
228,685 - BBR_RS11095 0.75 -0.7
228,690 - BBR_RS11095 0.76 -1.5
228,690 - BBR_RS11095 0.76 -2.4
228,696 - BBR_RS11095 0.76 -0.4
228,701 - BBR_RS11095 0.77 -2.2
228,711 - BBR_RS11095 0.78 -0.2
228,779 - BBR_RS11095 0.86 -2.0
228,804 - BBR_RS11095 0.88 -0.2
228,804 - BBR_RS11095 0.88 +0.6
228,804 - BBR_RS11095 0.88 -0.1
228,808 + BBR_RS11095 0.89 -0.7
228,821 - -0.4
228,838 + -1.1
228,854 + +1.1
228,854 + -2.1
228,856 + -2.7
228,856 + -0.4
228,856 + -1.9
228,867 + +2.0
228,948 + -1.6
228,999 - -2.2
229,010 + BBR_RS11100 0.10 -0.6
229,010 + BBR_RS11100 0.10 +0.9
229,010 + BBR_RS11100 0.10 -0.1
229,010 + BBR_RS11100 0.10 -0.9
229,015 + BBR_RS11100 0.11 -1.1
229,023 - BBR_RS11100 0.12 +0.5
229,036 - BBR_RS11100 0.13 -0.4
229,037 - BBR_RS11100 0.13 +0.6
229,037 - BBR_RS11100 0.13 +0.2
229,071 - BBR_RS11100 0.16 +0.2
229,110 + BBR_RS11100 0.20 -0.8
229,111 - BBR_RS11100 0.20 -1.9
229,132 - BBR_RS11100 0.22 -0.9
229,211 + BBR_RS11100 0.30 -2.1
229,211 + BBR_RS11100 0.30 -2.1
229,211 + BBR_RS11100 0.30 -0.6
229,211 + BBR_RS11100 0.30 -1.7
229,219 - BBR_RS11100 0.31 -0.7
229,219 - BBR_RS11100 0.31 +1.5
229,265 - BBR_RS11100 0.36 -1.5
229,268 - BBR_RS11100 0.36 -2.0
229,291 - BBR_RS11100 0.38 -1.3
229,300 + BBR_RS11100 0.39 -1.5
229,306 + BBR_RS11100 0.40 -1.7
229,314 - BBR_RS11100 0.40 +0.0
229,314 - BBR_RS11100 0.40 +0.3
229,314 - BBR_RS11100 0.40 -0.3
229,330 - BBR_RS11100 0.42 +1.3
229,353 - BBR_RS11100 0.44 -0.4
229,357 + BBR_RS11100 0.45 -2.2
229,360 - BBR_RS11100 0.45 +0.0
229,407 - BBR_RS11100 0.50 +0.9
229,409 + BBR_RS11100 0.50 -1.4
229,409 + BBR_RS11100 0.50 -1.2
229,409 + BBR_RS11100 0.50 -0.7
229,415 - BBR_RS11100 0.50 -1.7
229,416 + BBR_RS11100 0.51 -0.8
229,416 + BBR_RS11100 0.51 -1.3
229,417 - BBR_RS11100 0.51 -0.8
229,417 - BBR_RS11100 0.51 -2.9
229,417 - BBR_RS11100 0.51 +0.2
229,432 - BBR_RS11100 0.52 -1.1
229,454 - BBR_RS11100 0.54 +0.7
229,492 + BBR_RS11100 0.58 -1.5
229,502 - BBR_RS11100 0.59 -0.7
229,505 + BBR_RS11100 0.59 -1.9
229,513 - BBR_RS11100 0.60 -1.1
229,513 - BBR_RS11100 0.60 -1.8
229,530 + BBR_RS11100 0.62 -0.3
229,530 + BBR_RS11100 0.62 -2.1
229,538 - BBR_RS11100 0.63 +0.7
229,541 + BBR_RS11100 0.63 -3.4
229,547 - BBR_RS11100 0.64 -0.1
229,588 - BBR_RS11100 0.68 -0.5
229,588 - BBR_RS11100 0.68 -0.6
229,597 + BBR_RS11100 0.69 -1.2
229,605 - BBR_RS11100 0.69 -2.6
229,632 + BBR_RS11100 0.72 +0.4
229,650 + BBR_RS11100 0.74 -1.3
229,655 + BBR_RS11100 0.74 +1.2
229,660 + BBR_RS11100 0.75 -1.8
229,725 + BBR_RS11100 0.81 -0.6
229,749 + BBR_RS11100 0.84 -1.6
229,757 - BBR_RS11100 0.84 -1.9
229,770 - BBR_RS11100 0.86 -2.3
229,770 - BBR_RS11100 0.86 -0.7
229,787 - BBR_RS11100 0.87 -1.7
229,813 - +0.0
229,813 - +0.3
229,843 - -0.1
229,843 - -3.4
229,864 - -2.2
229,883 + +1.5

Or see this region's nucleotide sequence