Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20420

Experiment: cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
2,403,179	+		BBR_RS20415	0.35	-1.8
2,403,179	+		BBR_RS20415	0.35	-1.0
2,403,203	+		BBR_RS20415	0.36	-2.1
2,403,204	+		BBR_RS20415	0.36	-0.7
2,403,204	+		BBR_RS20415	0.36	-0.9
2,403,213	-		BBR_RS20415	0.37	-0.3
2,403,214	+		BBR_RS20415	0.37	-2.2
2,403,214	+		BBR_RS20415	0.37	-2.0
2,403,214	+		BBR_RS20415	0.37	-1.7
2,403,214	+		BBR_RS20415	0.37	-1.7
2,403,214	+		BBR_RS20415	0.37	-2.0
2,403,216	+		BBR_RS20415	0.37	-0.8
2,403,224	+		BBR_RS20415	0.38	-2.0
2,403,224	+		BBR_RS20415	0.38	-1.1
2,403,224	+		BBR_RS20415	0.38	-1.6
2,403,224	+		BBR_RS20415	0.38	-0.9
2,403,224	+		BBR_RS20415	0.38	-1.0
2,403,234	+		BBR_RS20415	0.38	-3.2
2,403,251	+		BBR_RS20415	0.40	-3.0
2,403,251	+		BBR_RS20415	0.40	-1.2
2,403,251	+		BBR_RS20415	0.40	-1.1
2,403,255	+		BBR_RS20415	0.40	-1.3
2,403,276	+		BBR_RS20415	0.41	+0.1
2,403,276	+		BBR_RS20415	0.41	-0.8
2,403,295	+		BBR_RS20415	0.43	-2.3
2,403,306	+		BBR_RS20415	0.43	-1.8
2,403,318	+		BBR_RS20415	0.44	-1.6
2,403,318	+		BBR_RS20415	0.44	-1.2
2,403,318	+		BBR_RS20415	0.44	-2.9
2,403,339	+		BBR_RS20415	0.46	-0.7
2,403,339	+		BBR_RS20415	0.46	+0.7
2,403,339	+		BBR_RS20415	0.46	-2.4
2,403,405	+		BBR_RS20415	0.50	-2.0
2,403,415	+		BBR_RS20415	0.51	-3.1
2,403,415	+		BBR_RS20415	0.51	+1.9
2,403,415	+		BBR_RS20415	0.51	-0.5
2,403,417	+		BBR_RS20415	0.51	-2.2
2,403,417	+		BBR_RS20415	0.51	-3.5
2,403,417	+		BBR_RS20415	0.51	-0.3
2,403,420	+		BBR_RS20415	0.51	-1.3
2,403,439	+		BBR_RS20415	0.52	+0.7
2,403,477	+		BBR_RS20415	0.55	-0.5
2,403,477	+		BBR_RS20415	0.55	-3.7
2,403,482	+		BBR_RS20415	0.55	-1.6
2,403,482	+		BBR_RS20415	0.55	-2.2
2,403,487	+		BBR_RS20415	0.55	+0.8
2,403,487	+		BBR_RS20415	0.55	+1.0
2,403,501	+		BBR_RS20415	0.56	-2.6
2,403,501	+		BBR_RS20415	0.56	-1.4
2,403,515	+		BBR_RS20415	0.57	-1.5
2,403,622	+		BBR_RS20415	0.65	+1.2
2,403,627	+		BBR_RS20415	0.65	-2.3
2,403,658	+		BBR_RS20415	0.67	-1.6
2,403,660	+		BBR_RS20415	0.67	-2.8
2,403,671	+		BBR_RS20415	0.68	-1.6
2,403,687	+		BBR_RS20415	0.69	-0.2
2,403,700	-		BBR_RS20415	0.70	-0.8
2,403,701	+		BBR_RS20415	0.70	+0.7
2,403,701	+		BBR_RS20415	0.70	-1.2
2,403,701	+		BBR_RS20415	0.70	-2.0
2,403,701	+		BBR_RS20415	0.70	-1.3
2,403,721	-		BBR_RS20415	0.71	-0.6
2,403,747	+		BBR_RS20415	0.73	-2.4
2,403,747	+		BBR_RS20415	0.73	-1.1
2,403,751	+		BBR_RS20415	0.73	+0.2
2,403,751	+		BBR_RS20415	0.73	-1.3
2,403,772	+		BBR_RS20415	0.75	-0.7
2,403,772	-		BBR_RS20415	0.75	-2.6
2,403,774	+		BBR_RS20415	0.75	-1.7
2,403,807	+		BBR_RS20415	0.77	-0.4
2,403,807	+		BBR_RS20415	0.77	-2.5
2,403,807	+		BBR_RS20415	0.77	-1.8
2,403,831	+		BBR_RS20415	0.79	-1.7
2,403,838	+		BBR_RS20415	0.79	+0.4
2,403,840	+		BBR_RS20415	0.79	-2.6
2,403,840	+		BBR_RS20415	0.79	-3.3
2,403,857	+		BBR_RS20415	0.80	-3.4
2,403,862	+		BBR_RS20415	0.81	-0.3
2,403,879	+		BBR_RS20415	0.82	-3.2
2,403,907	+		BBR_RS20415	0.84	+1.1
2,403,907	+		BBR_RS20415	0.84	-0.2
2,403,907	+		BBR_RS20415	0.84	-2.5
2,403,907	+		BBR_RS20415	0.84	+0.1
2,403,923	+		BBR_RS20415	0.85	-1.6
2,403,929	+		BBR_RS20415	0.85	+0.6
2,403,942	+		BBR_RS20415	0.86	-3.0
2,403,953	+		BBR_RS20415	0.87	+0.8
2,403,955	+		BBR_RS20415	0.87	-1.8
2,403,957	+		BBR_RS20415	0.87	-2.0
2,403,957	+		BBR_RS20415	0.87	-1.9
2,403,957	+		BBR_RS20415	0.87	-1.7
2,403,973	-		BBR_RS20415	0.88	-0.5
2,403,977	+		BBR_RS20415	0.88	+0.2
2,403,987	+		BBR_RS20415	0.89	-0.3
2,403,987	+		BBR_RS20415	0.89	+1.8
2,403,990	+		BBR_RS20415	0.89	-2.8
2,403,990	+		BBR_RS20415	0.89	+0.2
2,403,990	+		BBR_RS20415	0.89	-3.0
2,403,990	+		BBR_RS20415	0.89	-2.3
2,403,998	-		BBR_RS20415	0.90	-0.7
2,404,032	+				-1.2
2,404,036	+				-2.0
2,404,078	+				+0.3
2,404,078	+				+0.4
2,404,078	+				-3.1
2,404,086	-				-0.3
2,404,086	-				-2.1
2,404,088	+				-2.7
2,404,093	+				+0.0
2,404,094	+				+1.3
2,404,109	+				+3.8
2,404,115	+				-0.2
2,404,116	-				+0.7
2,404,123	-				-1.8
2,404,125	+				+1.1
2,404,133	-				+0.5
2,404,144	+				-1.4
2,404,170	+				-2.4
2,404,170	+				-2.7
2,404,174	+				-0.1
2,404,176	-				-0.4
2,404,176	-				+0.2
2,404,208	-				-1.1
2,404,213	+				-1.7
2,404,287	+		BBR_RS20420	0.12	+0.0
2,404,287	+		BBR_RS20420	0.12	+0.2
2,404,292	+		BBR_RS20420	0.13	+1.0
2,404,301	+		BBR_RS20420	0.14	-0.5
2,404,341	+		BBR_RS20420	0.18	+1.6
2,404,348	+		BBR_RS20420	0.19	+1.6
2,404,350	+		BBR_RS20420	0.19	-1.1
2,404,367	+		BBR_RS20420	0.21	+0.9
2,404,367	+		BBR_RS20420	0.21	-1.1
2,404,399	+		BBR_RS20420	0.25	-0.4
2,404,446	+		BBR_RS20420	0.30	-2.1
2,404,446	+		BBR_RS20420	0.30	+1.9
2,404,446	+		BBR_RS20420	0.30	+1.2
2,404,459	+		BBR_RS20420	0.31	-0.9
2,404,486	+		BBR_RS20420	0.34	+1.3
2,404,517	+		BBR_RS20420	0.37	+1.0
2,404,527	+		BBR_RS20420	0.38	-2.2
2,404,558	+		BBR_RS20420	0.42	-0.2
2,404,558	+		BBR_RS20420	0.42	-0.2
2,404,581	+		BBR_RS20420	0.44	-1.0
2,404,581	+		BBR_RS20420	0.44	+0.5
2,404,598	+		BBR_RS20420	0.46	+2.0
2,404,617	+		BBR_RS20420	0.48	-0.1
2,404,617	+		BBR_RS20420	0.48	+0.0
2,404,640	+		BBR_RS20420	0.50	+0.7
2,404,653	-		BBR_RS20420	0.52	-2.1
2,404,661	+		BBR_RS20420	0.53	-0.7
2,404,686	+		BBR_RS20420	0.55	-1.4
2,404,704	+		BBR_RS20420	0.57	-0.5
2,404,704	+		BBR_RS20420	0.57	-2.0
2,404,705	+		BBR_RS20420	0.57	+2.9
2,404,705	+		BBR_RS20420	0.57	-1.5
2,404,705	+		BBR_RS20420	0.57	-0.6
2,404,712	-		BBR_RS20420	0.58	+0.6
2,404,712	-		BBR_RS20420	0.58	+1.0
2,404,713	-		BBR_RS20420	0.58	+1.9
2,404,737	+		BBR_RS20420	0.61	-0.4
2,404,737	+		BBR_RS20420	0.61	+0.4
2,404,737	+		BBR_RS20420	0.61	+0.4
2,404,737	+		BBR_RS20420	0.61	-1.1
2,404,737	+		BBR_RS20420	0.61	+1.2
2,404,737	+		BBR_RS20420	0.61	-0.6
2,404,737	+		BBR_RS20420	0.61	-0.1
2,404,745	-		BBR_RS20420	0.62	+1.8
2,404,745	-		BBR_RS20420	0.62	-1.1
2,404,745	-		BBR_RS20420	0.62	+0.5
2,404,765	+		BBR_RS20420	0.64	-1.2
2,404,800	+		BBR_RS20420	0.68	+0.8
2,404,812	+		BBR_RS20420	0.69	-1.4
2,404,837	+		BBR_RS20420	0.72	-0.4
2,404,866	+		BBR_RS20420	0.75	-1.7
2,404,878	+		BBR_RS20420	0.76	-0.4
2,404,923	+		BBR_RS20420	0.81	-1.9
2,404,923	+		BBR_RS20420	0.81	-1.7
2,404,923	+		BBR_RS20420	0.81	+1.3
2,404,923	+		BBR_RS20420	0.81	-2.0
2,404,923	+		BBR_RS20420	0.81	-2.3
2,404,923	+		BBR_RS20420	0.81	+1.0
2,404,923	+		BBR_RS20420	0.81	-1.7
2,404,930	+		BBR_RS20420	0.82	-0.8
2,405,050	+				-3.3
2,405,050	+				-4.1
2,405,050	+				-1.7
2,405,055	+				-1.1
2,405,073	+				-0.0
2,405,073	+				-2.0
2,405,078	+				-2.0
2,405,081	+				-1.4
2,405,095	-				-3.0
2,405,097	-				-0.7
2,405,101	+				-2.6
2,405,115	+				-1.8
2,405,115	+				-1.7
2,405,127	+				-3.8
2,405,157	+				-1.8
2,405,157	+				+0.4
2,405,162	+				+0.0
2,405,162	+				-1.9
2,405,165	-				-2.4
2,406,018	-				-0.5
2,406,018	-				-0.9
2,406,023	+				+1.4
2,406,039	-				+0.2
2,406,053	-				+0.4
2,406,053	-				-1.1
2,406,053	-				-2.0
2,406,055	+				+0.9
2,406,058	-				-1.3
2,406,069	-				-0.6
2,406,072	+				+0.7
2,406,082	-				-0.1
2,406,086	+				-3.0
2,406,086	+				-3.4
2,406,090	-				+0.2
2,406,090	-				+5.5