Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19795

Experiment: cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
2,232,743	-				-1.1
2,232,749	-				-4.1
2,232,771	-				-0.1
2,232,771	-				-0.1
2,232,803	-				-1.7
2,232,803	-				-2.3
2,232,803	-				+0.4
2,232,809	+				-1.9
2,232,809	+				-1.7
2,232,817	-				-2.4
2,232,823	-				-0.9
2,232,824	+				+0.5
2,232,850	+				-0.8
2,232,859	+				-0.6
2,232,908	+				-1.3
2,232,908	+				-0.7
2,232,908	+				-2.0
2,232,908	+				-2.5
2,232,908	+				-1.7
2,232,908	+				-1.8
2,232,916	-				-1.3
2,232,916	-				-1.9
2,232,931	+				-2.1
2,232,934	-				-1.6
2,232,946	+				-2.1
2,232,953	+				-0.8
2,232,966	-				-2.3
2,232,966	-				-1.3
2,232,966	-				-0.9
2,232,967	+				-2.3
2,232,967	+				-2.9
2,232,975	-				-1.0
2,232,982	+				-1.5
2,232,987	+				-3.1
2,232,990	-				-3.4
2,232,995	-				-2.2
2,232,995	-				-2.1
2,233,019	-		BBR_RS19795	0.11	+0.2
2,233,019	-		BBR_RS19795	0.11	-3.5
2,233,032	-		BBR_RS19795	0.12	+0.9
2,233,063	-		BBR_RS19795	0.13	-2.0
2,233,063	-		BBR_RS19795	0.13	-2.4
2,233,063	-		BBR_RS19795	0.13	+0.3
2,233,079	+		BBR_RS19795	0.14	-2.4
2,233,087	-		BBR_RS19795	0.14	-1.2
2,233,100	+		BBR_RS19795	0.15	-1.3
2,233,108	-		BBR_RS19795	0.15	+0.9
2,233,112	+		BBR_RS19795	0.15	-2.3
2,233,118	-		BBR_RS19795	0.16	-1.6
2,233,120	-		BBR_RS19795	0.16	-0.9
2,233,163	+		BBR_RS19795	0.18	-1.1
2,233,173	+		BBR_RS19795	0.18	-2.0
2,233,173	+		BBR_RS19795	0.18	-2.4
2,233,240	+		BBR_RS19795	0.22	-3.0
2,233,240	+		BBR_RS19795	0.22	-1.6
2,233,240	+		BBR_RS19795	0.22	-0.6
2,233,240	+		BBR_RS19795	0.22	-1.0
2,233,240	+		BBR_RS19795	0.22	-2.4
2,233,240	+		BBR_RS19795	0.22	-0.7
2,233,240	+		BBR_RS19795	0.22	-0.1
2,233,240	+		BBR_RS19795	0.22	-2.6
2,233,240	+		BBR_RS19795	0.22	-2.5
2,233,242	+		BBR_RS19795	0.22	-2.2
2,233,242	+		BBR_RS19795	0.22	-1.1
2,233,248	-		BBR_RS19795	0.22	-0.5
2,233,248	-		BBR_RS19795	0.22	-1.6
2,233,248	-		BBR_RS19795	0.22	-2.3
2,233,248	-		BBR_RS19795	0.22	-2.5
2,233,248	-		BBR_RS19795	0.22	-2.6
2,233,248	-		BBR_RS19795	0.22	-0.0
2,233,248	-		BBR_RS19795	0.22	-1.8
2,233,248	-		BBR_RS19795	0.22	-1.9
2,233,258	-		BBR_RS19795	0.22	-1.1
2,233,281	-		BBR_RS19795	0.24	-1.7
2,233,291	-		BBR_RS19795	0.24	-2.7
2,233,291	-		BBR_RS19795	0.24	-1.0
2,233,291	-		BBR_RS19795	0.24	-2.1
2,233,291	-		BBR_RS19795	0.24	-3.3
2,233,298	-		BBR_RS19795	0.24	+0.4
2,233,298	-		BBR_RS19795	0.24	-0.4
2,233,305	-		BBR_RS19795	0.25	-2.7
2,233,310	-		BBR_RS19795	0.25	-0.3
2,233,332	+		BBR_RS19795	0.26	-1.4
2,233,332	+		BBR_RS19795	0.26	-3.5
2,233,332	+		BBR_RS19795	0.26	-1.8
2,233,337	+		BBR_RS19795	0.26	-1.1
2,233,340	-		BBR_RS19795	0.26	-2.7
2,233,340	-		BBR_RS19795	0.26	+0.1
2,233,340	-		BBR_RS19795	0.26	-2.0
2,233,340	-		BBR_RS19795	0.26	+0.5
2,233,348	-		BBR_RS19795	0.27	-2.0
2,233,353	-		BBR_RS19795	0.27	-4.0
2,233,394	-		BBR_RS19795	0.29	-2.1
2,233,396	+		BBR_RS19795	0.29	-3.2
2,233,398	-		BBR_RS19795	0.29	-1.5
2,233,418	+		BBR_RS19795	0.30	+3.1
2,233,423	+		BBR_RS19795	0.30	-1.9
2,233,425	-		BBR_RS19795	0.30	-2.8
2,233,426	-		BBR_RS19795	0.30	-2.0
2,233,436	-		BBR_RS19795	0.31	-3.6
2,233,437	-		BBR_RS19795	0.31	-2.2
2,233,437	-		BBR_RS19795	0.31	-2.9
2,233,455	+		BBR_RS19795	0.32	-0.8
2,233,500	-		BBR_RS19795	0.34	-2.4
2,233,509	+		BBR_RS19795	0.34	+0.8
2,233,509	+		BBR_RS19795	0.34	-0.8
2,233,509	+		BBR_RS19795	0.34	-2.0
2,233,509	+		BBR_RS19795	0.34	-2.8
2,233,509	+		BBR_RS19795	0.34	-1.7
2,233,509	+		BBR_RS19795	0.34	-1.6
2,233,517	-		BBR_RS19795	0.35	-1.4
2,233,517	-		BBR_RS19795	0.35	-0.6
2,233,577	-		BBR_RS19795	0.38	-1.5
2,233,577	-		BBR_RS19795	0.38	-1.4
2,233,607	-		BBR_RS19795	0.39	-1.7
2,233,607	-		BBR_RS19795	0.39	+1.1
2,233,622	-		BBR_RS19795	0.40	-1.6
2,233,640	-		BBR_RS19795	0.41	-0.7
2,233,640	-		BBR_RS19795	0.41	-4.8
2,233,642	+		BBR_RS19795	0.41	-1.8
2,233,657	-		BBR_RS19795	0.42	-2.5
2,233,662	-		BBR_RS19795	0.42	-0.6
2,233,703	+		BBR_RS19795	0.44	-3.3
2,233,703	+		BBR_RS19795	0.44	+0.1
2,233,703	+		BBR_RS19795	0.44	-2.5
2,233,711	-		BBR_RS19795	0.44	-2.2
2,233,711	-		BBR_RS19795	0.44	-1.5
2,233,726	-		BBR_RS19795	0.45	-2.1
2,233,742	-		BBR_RS19795	0.46	-1.2
2,233,749	-		BBR_RS19795	0.46	-2.3
2,233,767	-		BBR_RS19795	0.47	-0.1
2,233,774	+		BBR_RS19795	0.47	-1.1
2,233,810	+		BBR_RS19795	0.49	-2.0
2,233,813	-		BBR_RS19795	0.49	-2.9
2,233,816	+		BBR_RS19795	0.49	-2.2
2,233,816	+		BBR_RS19795	0.49	-1.9
2,233,835	+		BBR_RS19795	0.50	-0.1
2,233,838	-		BBR_RS19795	0.50	+2.5
2,233,843	-		BBR_RS19795	0.50	-0.6
2,233,856	-		BBR_RS19795	0.51	-1.4
2,233,856	-		BBR_RS19795	0.51	-2.9
2,233,865	+		BBR_RS19795	0.51	-2.4
2,233,865	+		BBR_RS19795	0.51	-2.5
2,233,870	+		BBR_RS19795	0.52	-1.3
2,233,871	-		BBR_RS19795	0.52	-1.0
2,233,873	-		BBR_RS19795	0.52	-1.6
2,233,898	+		BBR_RS19795	0.53	-0.8
2,233,910	+		BBR_RS19795	0.54	-1.3
2,233,910	+		BBR_RS19795	0.54	-1.3
2,233,918	-		BBR_RS19795	0.54	-1.8
2,233,918	-		BBR_RS19795	0.54	-1.9
2,233,918	-		BBR_RS19795	0.54	-2.4
2,233,928	-		BBR_RS19795	0.54	-2.1
2,233,933	-		BBR_RS19795	0.55	-1.2
2,233,943	-		BBR_RS19795	0.55	-1.4
2,233,955	+		BBR_RS19795	0.56	+3.2
2,233,955	+		BBR_RS19795	0.56	-0.5
2,234,009	-		BBR_RS19795	0.58	-0.8
2,234,009	-		BBR_RS19795	0.58	-1.1
2,234,009	-		BBR_RS19795	0.58	-1.4
2,234,035	+		BBR_RS19795	0.60	-1.3
2,234,041	+		BBR_RS19795	0.60	-1.9
2,234,043	-		BBR_RS19795	0.60	-1.9
2,234,047	+		BBR_RS19795	0.60	-2.0
2,234,056	-		BBR_RS19795	0.61	-3.1
2,234,065	+		BBR_RS19795	0.61	-2.1
2,234,067	-		BBR_RS19795	0.61	-0.7
2,234,129	-		BBR_RS19795	0.64	-0.4
2,234,129	-		BBR_RS19795	0.64	-2.7
2,234,134	-		BBR_RS19795	0.64	-0.8
2,234,139	-		BBR_RS19795	0.65	-3.0
2,234,141	+		BBR_RS19795	0.65	-2.2
2,234,142	+		BBR_RS19795	0.65	-0.9
2,234,149	-		BBR_RS19795	0.65	-1.3
2,234,149	-		BBR_RS19795	0.65	+0.1
2,234,149	-		BBR_RS19795	0.65	-0.8
2,234,149	-		BBR_RS19795	0.65	+0.5
2,234,168	-		BBR_RS19795	0.66	-2.4
2,234,168	-		BBR_RS19795	0.66	-1.9
2,234,178	-		BBR_RS19795	0.66	-1.4
2,234,182	+		BBR_RS19795	0.67	-0.8
2,234,220	+		BBR_RS19795	0.68	-0.8
2,234,241	+		BBR_RS19795	0.69	-2.5
2,234,249	+		BBR_RS19795	0.70	+0.3
2,234,249	+		BBR_RS19795	0.70	+0.6
2,234,259	+		BBR_RS19795	0.70	-1.8
2,234,265	+		BBR_RS19795	0.71	-3.5
2,234,265	+		BBR_RS19795	0.71	-2.1
2,234,265	+		BBR_RS19795	0.71	-1.4
2,234,272	+		BBR_RS19795	0.71	-1.3
2,234,273	-		BBR_RS19795	0.71	-1.0
2,234,273	-		BBR_RS19795	0.71	-2.6
2,234,275	-		BBR_RS19795	0.71	-2.3
2,234,280	-		BBR_RS19795	0.71	-1.1
2,234,367	+		BBR_RS19795	0.75	-1.6
2,234,372	+		BBR_RS19795	0.76	-1.9
2,234,380	-		BBR_RS19795	0.76	-0.8
2,234,380	-		BBR_RS19795	0.76	-2.4
2,234,380	-		BBR_RS19795	0.76	-2.3
2,234,393	+		BBR_RS19795	0.77	-1.9
2,234,393	+		BBR_RS19795	0.77	-0.5
2,234,393	-		BBR_RS19795	0.77	-0.6
2,234,402	-		BBR_RS19795	0.77	-2.0
2,234,413	+		BBR_RS19795	0.78	-0.4
2,234,413	+		BBR_RS19795	0.78	-1.9
2,234,421	-		BBR_RS19795	0.78	+0.2
2,234,421	-		BBR_RS19795	0.78	+1.0
2,234,421	-		BBR_RS19795	0.78	-0.6
2,234,421	-		BBR_RS19795	0.78	-2.9
2,234,436	+		BBR_RS19795	0.79	-1.2
2,234,443	+		BBR_RS19795	0.79	-2.3
2,234,446	-		BBR_RS19795	0.79	-3.2
2,234,446	-		BBR_RS19795	0.79	-2.9
2,234,446	-		BBR_RS19795	0.79	-2.4
2,234,450	+		BBR_RS19795	0.79	-0.8
2,234,492	+		BBR_RS19795	0.81	-2.9
2,234,502	+		BBR_RS19795	0.82	-1.9
2,234,529	+		BBR_RS19795	0.83	-1.9
2,234,529	+		BBR_RS19795	0.83	-1.5
2,234,529	+		BBR_RS19795	0.83	-1.1
2,234,537	-		BBR_RS19795	0.84	-2.2
2,234,537	-		BBR_RS19795	0.84	-0.4
2,234,541	+		BBR_RS19795	0.84	-2.8
2,234,541	+		BBR_RS19795	0.84	+0.4
2,234,542	-		BBR_RS19795	0.84	-2.4
2,234,547	-		BBR_RS19795	0.84	+0.3
2,234,547	-		BBR_RS19795	0.84	-1.0
2,234,552	+		BBR_RS19795	0.84	+1.8
2,234,564	+		BBR_RS19795	0.85	-1.7
2,234,564	+		BBR_RS19795	0.85	-1.9
2,234,576	+		BBR_RS19795	0.85	+0.2
2,234,577	-		BBR_RS19795	0.86	-0.5
2,234,577	-		BBR_RS19795	0.86	-1.4
2,234,593	+		BBR_RS19795	0.86	-2.0
2,234,604	+		BBR_RS19795	0.87	-0.5
2,234,611	-		BBR_RS19795	0.87	-1.3
2,234,625	-		BBR_RS19795	0.88	-1.6
2,234,631	-		BBR_RS19795	0.88	-2.0
2,234,631	-		BBR_RS19795	0.88	-2.1
2,234,632	+		BBR_RS19795	0.88	-1.9
2,234,678	+				-2.2
2,234,678	+				-3.0
2,234,683	+				-2.6
2,234,683	+				+0.1
2,234,686	-				-1.7
2,234,697	-				-1.6
2,234,698	-				+0.8
2,234,710	+				-1.2
2,234,721	-				-3.4
2,234,727	-				+0.7
2,234,740	-				-2.6
2,234,767	-				+1.8
2,234,799	+				-0.8
2,234,799	+				-1.7
2,234,813	+				-1.9
2,234,821	-				-1.1
2,234,824	+				-1.1
2,234,828	-				-0.7
2,234,838	+				-3.0
2,234,846	-				-2.0
2,234,877	-				-2.9
2,234,920	-				-1.9
2,234,953	+				-2.9
2,234,953	+				-2.6
2,234,954	+				-2.9
2,234,954	+				-1.0
2,234,954	+				-1.5
2,234,954	+				-2.5
2,234,959	+				-0.5
2,234,959	+				-1.2
2,234,962	-				-1.2
2,234,962	-				-0.0
2,234,980	-				-1.6
2,235,001	+				-2.1
2,235,007	+				-0.6
2,235,009	+				-2.0
2,235,009	+				-1.0
2,235,017	-				-1.0
2,235,017	-				-3.4
2,235,023	-				+2.7
2,235,025	+				-2.8
2,235,025	+				+1.3
2,235,036	+				+1.4
2,235,051	-				-0.1
2,235,070	+				-1.2
2,235,078	-				+0.0
2,235,078	-				-2.3
2,235,078	-				+2.9
2,235,113	+				-1.7
2,235,123	-				-2.9
2,235,131	+				-2.7
2,235,131	+				+0.5
2,235,131	+				+1.1
2,235,139	-				-1.5
2,235,139	-				-1.0
2,235,139	-				-2.2
2,235,139	-				+1.3
2,235,151	+		BBR_RS19800	0.11	-0.6
2,235,159	+		BBR_RS19800	0.12	+0.3
2,235,173	+		BBR_RS19800	0.13	-1.0
2,235,181	+		BBR_RS19800	0.14	-1.1
2,235,210	+		BBR_RS19800	0.17	-2.1
2,235,210	+		BBR_RS19800	0.17	-0.2
2,235,218	-		BBR_RS19800	0.18	-2.5
2,235,235	+		BBR_RS19800	0.20	+0.8
2,235,240	+		BBR_RS19800	0.20	-1.8
2,235,245	+		BBR_RS19800	0.21	-3.0
2,235,251	+		BBR_RS19800	0.22	-1.0
2,235,254	-		BBR_RS19800	0.22	-0.7
2,235,259	-		BBR_RS19800	0.22	-3.6
2,235,259	-		BBR_RS19800	0.22	-2.4
2,235,263	-		BBR_RS19800	0.23	-1.0
2,235,265	+		BBR_RS19800	0.23	+0.3
2,235,271	+		BBR_RS19800	0.24	-1.0
2,235,279	-		BBR_RS19800	0.25	-2.0
2,235,293	+		BBR_RS19800	0.26	-0.6
2,235,301	-		BBR_RS19800	0.27	+1.9
2,235,301	-		BBR_RS19800	0.27	-2.0
2,235,301	-		BBR_RS19800	0.27	+0.6
2,235,328	-		BBR_RS19800	0.30	+2.0
2,235,339	+		BBR_RS19800	0.31	-0.3
2,235,344	+		BBR_RS19800	0.31	-2.3
2,235,347	-		BBR_RS19800	0.32	+0.4
2,235,347	-		BBR_RS19800	0.32	-0.9
2,235,347	-		BBR_RS19800	0.32	+0.8
2,235,347	-		BBR_RS19800	0.32	+1.5
2,235,374	+		BBR_RS19800	0.35	-1.1
2,235,374	+		BBR_RS19800	0.35	-2.2
2,235,377	-		BBR_RS19800	0.35	+0.9
2,235,388	-		BBR_RS19800	0.36	-2.0
2,235,417	-		BBR_RS19800	0.39	-1.7
2,235,431	-		BBR_RS19800	0.41	-1.8
2,235,432	+		BBR_RS19800	0.41	+0.7
2,235,450	+		BBR_RS19800	0.43	-2.5
2,235,482	-		BBR_RS19800	0.46	-0.8
2,235,487	-		BBR_RS19800	0.47	-1.5
2,235,487	-		BBR_RS19800	0.47	-1.8
2,235,494	-		BBR_RS19800	0.47	+0.5
2,235,501	+		BBR_RS19800	0.48	-1.5
2,235,506	-		BBR_RS19800	0.49	-2.5
2,235,509	-		BBR_RS19800	0.49	-1.6
2,235,519	-		BBR_RS19800	0.50	+0.7
2,235,536	+		BBR_RS19800	0.52	-1.8
2,235,536	+		BBR_RS19800	0.52	+1.6
2,235,537	+		BBR_RS19800	0.52	-2.7
2,235,542	+		BBR_RS19800	0.52	-0.8
2,235,542	+		BBR_RS19800	0.52	-2.9
2,235,542	+		BBR_RS19800	0.52	+0.4
2,235,542	+		BBR_RS19800	0.52	-0.5
2,235,542	+		BBR_RS19800	0.52	+1.2
2,235,542	+		BBR_RS19800	0.52	+0.2
2,235,542	+		BBR_RS19800	0.52	-0.9
2,235,544	-		BBR_RS19800	0.53	+0.3
2,235,545	-		BBR_RS19800	0.53	+1.9
2,235,550	-		BBR_RS19800	0.53	-0.5
2,235,555	-		BBR_RS19800	0.54	+2.3
2,235,555	-		BBR_RS19800	0.54	-0.6
2,235,555	-		BBR_RS19800	0.54	-1.8
2,235,562	-		BBR_RS19800	0.55	+1.8
2,235,566	+		BBR_RS19800	0.55	-1.3
2,235,600	+		BBR_RS19800	0.59	-0.0
2,235,608	-		BBR_RS19800	0.59	-1.7
2,235,610	+		BBR_RS19800	0.60	+1.9
2,235,618	-		BBR_RS19800	0.61	-2.7
2,235,618	-		BBR_RS19800	0.61	-0.5
2,235,618	-		BBR_RS19800	0.61	+0.2
2,235,625	-		BBR_RS19800	0.61	-0.4
2,235,625	-		BBR_RS19800	0.61	-2.4
2,235,628	-		BBR_RS19800	0.62	+1.4
2,235,641	-		BBR_RS19800	0.63	-1.5
2,235,663	+		BBR_RS19800	0.65	-1.1
2,235,671	+		BBR_RS19800	0.66	-0.7
2,235,671	+		BBR_RS19800	0.66	-1.1
2,235,671	+		BBR_RS19800	0.66	+0.1
2,235,671	+		BBR_RS19800	0.66	+2.3
2,235,671	+		BBR_RS19800	0.66	-1.9
2,235,679	+		BBR_RS19800	0.67	-1.0
2,235,684	+		BBR_RS19800	0.68	-1.9
2,235,691	+		BBR_RS19800	0.68	+0.3
2,235,700	-		BBR_RS19800	0.69	-0.7
2,235,706	-		BBR_RS19800	0.70	-2.9
2,235,717	+		BBR_RS19800	0.71	+0.3
2,235,731	+		BBR_RS19800	0.73	+0.1
2,235,738	+		BBR_RS19800	0.73	-1.4
2,235,738	+		BBR_RS19800	0.73	+0.7
2,235,739	-		BBR_RS19800	0.73	-1.1
2,235,745	-		BBR_RS19800	0.74	-2.7
2,235,745	-		BBR_RS19800	0.74	-1.1
2,235,746	-		BBR_RS19800	0.74	-2.1
2,235,749	+		BBR_RS19800	0.74	-1.7
2,235,751	-		BBR_RS19800	0.75	-2.1
2,235,751	-		BBR_RS19800	0.75	-0.3
2,235,770	+		BBR_RS19800	0.77	-1.8
2,235,794	+		BBR_RS19800	0.79	-1.4
2,235,794	+		BBR_RS19800	0.79	-3.6
2,235,796	+		BBR_RS19800	0.79	-2.8
2,235,802	-		BBR_RS19800	0.80	+1.2
2,235,802	-		BBR_RS19800	0.80	-0.2
2,235,802	-		BBR_RS19800	0.80	-2.0
2,235,802	-		BBR_RS19800	0.80	-1.2
2,235,802	-		BBR_RS19800	0.80	-1.5
2,235,802	-		BBR_RS19800	0.80	+0.2
2,235,802	-		BBR_RS19800	0.80	-1.6
2,235,802	-		BBR_RS19800	0.80	-0.5
2,235,804	-		BBR_RS19800	0.80	-2.8
2,235,804	-		BBR_RS19800	0.80	-0.8
2,235,804	-		BBR_RS19800	0.80	-0.8
2,235,804	-		BBR_RS19800	0.80	+1.4
2,235,816	-		BBR_RS19800	0.82	-2.2
2,235,852	-		BBR_RS19800	0.85	-1.0
2,235,857	-		BBR_RS19800	0.86	+0.6
2,235,862	-		BBR_RS19800	0.86	-1.2
2,235,870	-		BBR_RS19800	0.87	+1.8
2,235,870	-		BBR_RS19800	0.87	+0.2
2,235,872	-		BBR_RS19800	0.87	-1.4
2,235,872	-		BBR_RS19800	0.87	+0.2