Experiment: cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13090 and BBR_RS13095 are separated by 179 nucleotides BBR_RS13095 and BBR_RS13100 are separated by 255 nucleotides
BBR_RS13090: BBR_RS13090 - Permease of ABC transporter system for sugars, at 710,019 to 711,017
_RS13090
BBR_RS13095: BBR_RS13095 - beta-galactosidase, at 711,197 to 713,272
_RS13095
BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874
_RS13100
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 711.046 kb on - strand at 711.046 kb on - strand at 711.059 kb on + strand at 711.084 kb on + strand at 711.106 kb on + strand at 711.142 kb on - strand at 711.150 kb on + strand at 711.158 kb on - strand at 711.195 kb on + strand at 711.203 kb on - strand at 711.253 kb on - strand at 711.293 kb on - strand at 711.316 kb on - strand at 711.319 kb on + strand at 711.341 kb on - strand at 711.341 kb on - strand at 711.397 kb on - strand at 711.493 kb on + strand, within BBR_RS13095 at 711.502 kb on - strand, within BBR_RS13095 at 711.560 kb on - strand, within BBR_RS13095 at 711.612 kb on + strand, within BBR_RS13095 at 711.643 kb on + strand, within BBR_RS13095 at 711.643 kb on + strand, within BBR_RS13095 at 711.684 kb on + strand, within BBR_RS13095 at 711.692 kb on + strand, within BBR_RS13095 at 711.702 kb on + strand, within BBR_RS13095 at 711.776 kb on + strand, within BBR_RS13095 at 711.885 kb on - strand, within BBR_RS13095 at 711.885 kb on - strand, within BBR_RS13095 at 711.926 kb on + strand, within BBR_RS13095 at 711.941 kb on + strand, within BBR_RS13095 at 711.943 kb on + strand, within BBR_RS13095 at 711.951 kb on - strand, within BBR_RS13095 at 711.975 kb on + strand, within BBR_RS13095 at 712.072 kb on + strand, within BBR_RS13095 at 712.104 kb on + strand, within BBR_RS13095 at 712.116 kb on - strand, within BBR_RS13095 at 712.179 kb on + strand, within BBR_RS13095 at 712.224 kb on + strand, within BBR_RS13095 at 712.228 kb on - strand, within BBR_RS13095 at 712.229 kb on - strand, within BBR_RS13095 at 712.234 kb on + strand, within BBR_RS13095 at 712.234 kb on + strand, within BBR_RS13095 at 712.235 kb on + strand, within BBR_RS13095 at 712.276 kb on + strand, within BBR_RS13095 at 712.276 kb on + strand, within BBR_RS13095 at 712.276 kb on + strand, within BBR_RS13095 at 712.284 kb on - strand, within BBR_RS13095 at 712.284 kb on - strand, within BBR_RS13095 at 712.290 kb on - strand, within BBR_RS13095 at 712.305 kb on + strand, within BBR_RS13095 at 712.313 kb on - strand, within BBR_RS13095 at 712.335 kb on + strand, within BBR_RS13095 at 712.365 kb on + strand, within BBR_RS13095 at 712.365 kb on + strand, within BBR_RS13095 at 712.404 kb on + strand, within BBR_RS13095 at 712.404 kb on + strand, within BBR_RS13095 at 712.412 kb on - strand, within BBR_RS13095 at 712.412 kb on - strand, within BBR_RS13095 at 712.412 kb on - strand, within BBR_RS13095 at 712.412 kb on - strand, within BBR_RS13095 at 712.412 kb on - strand, within BBR_RS13095 at 712.414 kb on + strand, within BBR_RS13095 at 712.419 kb on + strand, within BBR_RS13095 at 712.420 kb on + strand, within BBR_RS13095 at 712.427 kb on - strand, within BBR_RS13095 at 712.461 kb on + strand, within BBR_RS13095 at 712.463 kb on + strand, within BBR_RS13095 at 712.469 kb on - strand, within BBR_RS13095 at 712.485 kb on + strand, within BBR_RS13095 at 712.485 kb on + strand, within BBR_RS13095 at 712.492 kb on - strand, within BBR_RS13095 at 712.506 kb on - strand, within BBR_RS13095 at 712.506 kb on - strand, within BBR_RS13095 at 712.506 kb on - strand, within BBR_RS13095 at 712.506 kb on - strand, within BBR_RS13095 at 712.558 kb on + strand, within BBR_RS13095 at 712.588 kb on + strand, within BBR_RS13095 at 712.610 kb on + strand, within BBR_RS13095 at 712.641 kb on - strand, within BBR_RS13095 at 712.655 kb on + strand, within BBR_RS13095 at 712.668 kb on + strand, within BBR_RS13095 at 712.678 kb on + strand, within BBR_RS13095 at 712.687 kb on + strand, within BBR_RS13095 at 712.687 kb on + strand, within BBR_RS13095 at 712.714 kb on + strand, within BBR_RS13095 at 712.723 kb on - strand, within BBR_RS13095 at 712.723 kb on - strand, within BBR_RS13095 at 712.743 kb on + strand, within BBR_RS13095 at 712.800 kb on - strand, within BBR_RS13095 at 712.811 kb on + strand, within BBR_RS13095 at 712.811 kb on + strand, within BBR_RS13095 at 712.821 kb on + strand, within BBR_RS13095 at 712.830 kb on - strand, within BBR_RS13095 at 712.836 kb on + strand, within BBR_RS13095 at 712.839 kb on + strand, within BBR_RS13095 at 712.873 kb on - strand, within BBR_RS13095 at 712.880 kb on - strand, within BBR_RS13095 at 712.887 kb on + strand, within BBR_RS13095 at 712.897 kb on + strand, within BBR_RS13095 at 712.897 kb on + strand, within BBR_RS13095 at 712.906 kb on + strand, within BBR_RS13095 at 712.906 kb on + strand, within BBR_RS13095 at 713.011 kb on + strand, within BBR_RS13095 at 713.014 kb on - strand, within BBR_RS13095 at 713.020 kb on - strand, within BBR_RS13095 at 713.023 kb on + strand, within BBR_RS13095 at 713.038 kb on + strand, within BBR_RS13095 at 713.112 kb on + strand at 713.112 kb on + strand at 713.117 kb on + strand at 713.130 kb on - strand at 713.138 kb on - strand at 713.199 kb on + strand at 713.217 kb on - strand at 713.266 kb on + strand at 713.266 kb on + strand at 713.266 kb on + strand at 713.266 kb on + strand at 713.274 kb on - strand at 713.274 kb on - strand at 713.281 kb on + strand at 713.284 kb on - strand at 713.425 kb on - strand at 713.558 kb on + strand at 713.558 kb on + strand at 713.566 kb on - strand at 713.584 kb on + strand at 713.641 kb on - strand at 713.713 kb on + strand, within BBR_RS13100 at 713.735 kb on - strand, within BBR_RS13100 at 713.769 kb on - strand, within BBR_RS13100 at 713.771 kb on + strand, within BBR_RS13100 at 713.779 kb on - strand, within BBR_RS13100 at 713.789 kb on - strand, within BBR_RS13100 at 713.795 kb on + strand, within BBR_RS13100 at 713.827 kb on + strand, within BBR_RS13100 at 713.827 kb on + strand, within BBR_RS13100 at 713.835 kb on - strand, within BBR_RS13100 at 713.837 kb on + strand, within BBR_RS13100 at 713.902 kb on + strand, within BBR_RS13100 at 713.910 kb on + strand, within BBR_RS13100 at 713.910 kb on + strand, within BBR_RS13100 at 713.910 kb on + strand, within BBR_RS13100 at 713.918 kb on - strand, within BBR_RS13100 at 713.918 kb on - strand, within BBR_RS13100 at 713.925 kb on + strand, within BBR_RS13100 at 713.933 kb on - strand, within BBR_RS13100 at 713.933 kb on - strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.948 kb on + strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.955 kb on - strand, within BBR_RS13100 at 713.984 kb on + strand, within BBR_RS13100 at 714.034 kb on + strand, within BBR_RS13100 at 714.034 kb on + strand, within BBR_RS13100 at 714.060 kb on - strand, within BBR_RS13100 at 714.060 kb on - strand, within BBR_RS13100 at 714.112 kb on - strand, within BBR_RS13100 at 714.167 kb on + strand, within BBR_RS13100 at 714.186 kb on + strand, within BBR_RS13100 at 714.186 kb on + strand, within BBR_RS13100 at 714.206 kb on - strand, within BBR_RS13100 at 714.232 kb on - strand, within BBR_RS13100 at 714.242 kb on - strand, within BBR_RS13100 at 714.267 kb on - strand, within BBR_RS13100
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 711,046 - +0.3 711,046 - -0.5 711,059 + -1.8 711,084 + -0.4 711,106 + -1.4 711,142 - +0.8 711,150 + -0.2 711,158 - -0.6 711,195 + +0.4 711,203 - +2.3 711,253 - +0.8 711,293 - +1.6 711,316 - -1.2 711,319 + +0.5 711,341 - +1.3 711,341 - -1.3 711,397 - -2.5 711,493 + BBR_RS13095 0.14 +0.9 711,502 - BBR_RS13095 0.15 +0.8 711,560 - BBR_RS13095 0.17 -0.4 711,612 + BBR_RS13095 0.20 +0.5 711,643 + BBR_RS13095 0.21 -0.3 711,643 + BBR_RS13095 0.21 -0.8 711,684 + BBR_RS13095 0.23 +0.2 711,692 + BBR_RS13095 0.24 -1.1 711,702 + BBR_RS13095 0.24 +0.6 711,776 + BBR_RS13095 0.28 +0.2 711,885 - BBR_RS13095 0.33 -1.9 711,885 - BBR_RS13095 0.33 +1.4 711,926 + BBR_RS13095 0.35 -0.8 711,941 + BBR_RS13095 0.36 -0.3 711,943 + BBR_RS13095 0.36 +1.6 711,951 - BBR_RS13095 0.36 +2.9 711,975 + BBR_RS13095 0.37 -0.2 712,072 + BBR_RS13095 0.42 -3.0 712,104 + BBR_RS13095 0.44 -2.0 712,116 - BBR_RS13095 0.44 -1.6 712,179 + BBR_RS13095 0.47 +0.5 712,224 + BBR_RS13095 0.49 +1.0 712,228 - BBR_RS13095 0.50 +4.6 712,229 - BBR_RS13095 0.50 -0.4 712,234 + BBR_RS13095 0.50 +1.9 712,234 + BBR_RS13095 0.50 -0.1 712,235 + BBR_RS13095 0.50 +1.9 712,276 + BBR_RS13095 0.52 -0.6 712,276 + BBR_RS13095 0.52 +1.0 712,276 + BBR_RS13095 0.52 -0.9 712,284 - BBR_RS13095 0.52 +0.6 712,284 - BBR_RS13095 0.52 +0.5 712,290 - BBR_RS13095 0.53 -1.0 712,305 + BBR_RS13095 0.53 -1.8 712,313 - BBR_RS13095 0.54 +1.0 712,335 + BBR_RS13095 0.55 -0.4 712,365 + BBR_RS13095 0.56 -0.1 712,365 + BBR_RS13095 0.56 -2.7 712,404 + BBR_RS13095 0.58 +0.4 712,404 + BBR_RS13095 0.58 +0.2 712,412 - BBR_RS13095 0.59 +0.9 712,412 - BBR_RS13095 0.59 +1.2 712,412 - BBR_RS13095 0.59 -0.4 712,412 - BBR_RS13095 0.59 +0.8 712,412 - BBR_RS13095 0.59 +0.6 712,414 + BBR_RS13095 0.59 +1.6 712,419 + BBR_RS13095 0.59 -1.5 712,420 + BBR_RS13095 0.59 +0.4 712,427 - BBR_RS13095 0.59 +0.6 712,461 + BBR_RS13095 0.61 +0.7 712,463 + BBR_RS13095 0.61 -1.2 712,469 - BBR_RS13095 0.61 +0.2 712,485 + BBR_RS13095 0.62 -0.4 712,485 + BBR_RS13095 0.62 -0.9 712,492 - BBR_RS13095 0.62 -1.6 712,506 - BBR_RS13095 0.63 +1.8 712,506 - BBR_RS13095 0.63 -0.9 712,506 - BBR_RS13095 0.63 +1.3 712,506 - BBR_RS13095 0.63 -1.7 712,558 + BBR_RS13095 0.66 -2.0 712,588 + BBR_RS13095 0.67 -0.2 712,610 + BBR_RS13095 0.68 -2.0 712,641 - BBR_RS13095 0.70 +1.4 712,655 + BBR_RS13095 0.70 +2.7 712,668 + BBR_RS13095 0.71 -1.0 712,678 + BBR_RS13095 0.71 +0.4 712,687 + BBR_RS13095 0.72 +0.3 712,687 + BBR_RS13095 0.72 -0.9 712,714 + BBR_RS13095 0.73 -1.8 712,723 - BBR_RS13095 0.74 -2.0 712,723 - BBR_RS13095 0.74 +0.9 712,743 + BBR_RS13095 0.74 -3.2 712,800 - BBR_RS13095 0.77 -1.5 712,811 + BBR_RS13095 0.78 +1.1 712,811 + BBR_RS13095 0.78 -2.4 712,821 + BBR_RS13095 0.78 -2.3 712,830 - BBR_RS13095 0.79 -0.9 712,836 + BBR_RS13095 0.79 +1.4 712,839 + BBR_RS13095 0.79 -1.4 712,873 - BBR_RS13095 0.81 -0.9 712,880 - BBR_RS13095 0.81 -1.6 712,887 + BBR_RS13095 0.81 -1.2 712,897 + BBR_RS13095 0.82 -0.9 712,897 + BBR_RS13095 0.82 +0.0 712,906 + BBR_RS13095 0.82 -1.5 712,906 + BBR_RS13095 0.82 -0.1 713,011 + BBR_RS13095 0.87 +1.3 713,014 - BBR_RS13095 0.88 -1.3 713,020 - BBR_RS13095 0.88 -0.4 713,023 + BBR_RS13095 0.88 -2.0 713,038 + BBR_RS13095 0.89 +1.5 713,112 + -1.9 713,112 + -1.9 713,117 + -0.1 713,130 - +1.4 713,138 - +0.8 713,199 + +1.4 713,217 - -0.3 713,266 + +0.4 713,266 + +1.8 713,266 + +0.9 713,266 + +1.0 713,274 - +1.2 713,274 - -1.9 713,281 + +1.3 713,284 - +2.4 713,425 - -1.5 713,558 + +0.8 713,558 + -1.0 713,566 - -2.7 713,584 + -1.1 713,641 - -0.5 713,713 + BBR_RS13100 0.14 -1.2 713,735 - BBR_RS13100 0.15 +0.6 713,769 - BBR_RS13100 0.18 +2.0 713,771 + BBR_RS13100 0.18 +1.6 713,779 - BBR_RS13100 0.19 -0.7 713,789 - BBR_RS13100 0.19 -3.0 713,795 + BBR_RS13100 0.20 -1.1 713,827 + BBR_RS13100 0.22 +0.8 713,827 + BBR_RS13100 0.22 +0.6 713,835 - BBR_RS13100 0.23 +1.9 713,837 + BBR_RS13100 0.23 +0.7 713,902 + BBR_RS13100 0.28 -0.6 713,910 + BBR_RS13100 0.28 -1.5 713,910 + BBR_RS13100 0.28 -1.8 713,910 + BBR_RS13100 0.28 -0.2 713,918 - BBR_RS13100 0.29 +0.4 713,918 - BBR_RS13100 0.29 +0.4 713,925 + BBR_RS13100 0.29 +1.2 713,933 - BBR_RS13100 0.30 +1.5 713,933 - BBR_RS13100 0.30 +0.9 713,948 + BBR_RS13100 0.31 +1.4 713,948 + BBR_RS13100 0.31 +1.7 713,948 + BBR_RS13100 0.31 +0.6 713,948 + BBR_RS13100 0.31 +1.4 713,955 - BBR_RS13100 0.32 -0.6 713,955 - BBR_RS13100 0.32 +1.5 713,955 - BBR_RS13100 0.32 +1.0 713,955 - BBR_RS13100 0.32 -1.6 713,984 + BBR_RS13100 0.34 +0.2 714,034 + BBR_RS13100 0.38 -0.4 714,034 + BBR_RS13100 0.38 -2.1 714,060 - BBR_RS13100 0.39 +0.5 714,060 - BBR_RS13100 0.39 -0.3 714,112 - BBR_RS13100 0.43 -0.0 714,167 + BBR_RS13100 0.47 +0.8 714,186 + BBR_RS13100 0.49 -1.7 714,186 + BBR_RS13100 0.49 +1.4 714,206 - BBR_RS13100 0.50 -0.2 714,232 - BBR_RS13100 0.52 -1.2 714,242 - BBR_RS13100 0.53 +0.7 714,267 - BBR_RS13100 0.55 +0.4
Or see this region's nucleotide sequence