Experiment: cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12305 and BBR_RS12310 are separated by 251 nucleotides BBR_RS12310 and BBR_RS20690 are separated by 38 nucleotides BBR_RS20690 and BBR_RS12315 are separated by 115 nucleotides
BBR_RS12305: BBR_RS12305 - endonuclease/exonuclease/phosphatase family protein, at 510,658 to 511,989
_RS12305
BBR_RS12310: BBR_RS12310 - signal recognition particle protein, at 512,241 to 513,896
_RS12310
BBR_RS20690: BBR_RS20690 - hypothetical protein, at 513,935 to 514,135
_RS20690
BBR_RS12315: BBR_RS12315 - cation transporter, at 514,251 to 515,159
_RS12315
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 511.242 kb on - strand, within BBR_RS12305 at 511.254 kb on - strand, within BBR_RS12305 at 511.300 kb on + strand, within BBR_RS12305 at 511.410 kb on + strand, within BBR_RS12305 at 511.436 kb on + strand, within BBR_RS12305 at 511.507 kb on - strand, within BBR_RS12305 at 511.547 kb on + strand, within BBR_RS12305 at 511.571 kb on - strand, within BBR_RS12305 at 511.573 kb on - strand, within BBR_RS12305 at 511.622 kb on + strand, within BBR_RS12305 at 511.622 kb on + strand, within BBR_RS12305 at 511.635 kb on - strand, within BBR_RS12305 at 511.644 kb on - strand, within BBR_RS12305 at 511.701 kb on + strand, within BBR_RS12305 at 511.701 kb on + strand, within BBR_RS12305 at 511.718 kb on + strand, within BBR_RS12305 at 511.744 kb on - strand, within BBR_RS12305 at 511.751 kb on + strand, within BBR_RS12305 at 511.758 kb on + strand, within BBR_RS12305 at 511.775 kb on + strand, within BBR_RS12305 at 511.777 kb on + strand, within BBR_RS12305 at 511.793 kb on + strand, within BBR_RS12305 at 511.852 kb on + strand, within BBR_RS12305 at 511.860 kb on - strand at 511.865 kb on + strand at 511.875 kb on - strand at 511.886 kb on + strand at 511.925 kb on - strand at 511.941 kb on - strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.951 kb on - strand at 511.951 kb on - strand at 511.965 kb on + strand at 511.970 kb on + strand at 511.970 kb on + strand at 511.978 kb on - strand at 512.039 kb on - strand at 512.051 kb on + strand at 512.057 kb on - strand at 512.062 kb on - strand at 512.062 kb on - strand at 512.063 kb on - strand at 512.087 kb on - strand at 512.112 kb on - strand at 512.159 kb on - strand at 512.188 kb on - strand at 512.235 kb on + strand at 512.258 kb on - strand at 512.285 kb on - strand at 512.288 kb on + strand at 512.296 kb on - strand at 512.321 kb on + strand at 512.329 kb on - strand at 512.329 kb on - strand at 512.329 kb on - strand at 512.341 kb on + strand at 512.422 kb on + strand, within BBR_RS12310 at 512.435 kb on - strand, within BBR_RS12310 at 512.559 kb on - strand, within BBR_RS12310 at 513.898 kb on - strand at 513.979 kb on - strand, within BBR_RS20690 at 513.979 kb on - strand, within BBR_RS20690 at 514.043 kb on + strand, within BBR_RS20690 at 514.090 kb on - strand, within BBR_RS20690 at 514.152 kb on + strand at 514.166 kb on + strand at 514.166 kb on + strand at 514.200 kb on + strand at 514.281 kb on + strand at 514.289 kb on - strand at 514.319 kb on - strand at 514.359 kb on + strand, within BBR_RS12315 at 514.437 kb on + strand, within BBR_RS12315 at 514.439 kb on + strand, within BBR_RS12315 at 514.439 kb on + strand, within BBR_RS12315 at 514.441 kb on + strand, within BBR_RS12315 at 514.445 kb on - strand, within BBR_RS12315 at 514.445 kb on - strand, within BBR_RS12315 at 514.445 kb on - strand, within BBR_RS12315 at 514.445 kb on - strand, within BBR_RS12315 at 514.445 kb on - strand, within BBR_RS12315 at 514.452 kb on - strand, within BBR_RS12315 at 514.469 kb on + strand, within BBR_RS12315 at 514.482 kb on - strand, within BBR_RS12315 at 514.482 kb on - strand, within BBR_RS12315 at 514.496 kb on + strand, within BBR_RS12315 at 514.511 kb on - strand, within BBR_RS12315 at 514.534 kb on - strand, within BBR_RS12315 at 514.550 kb on - strand, within BBR_RS12315 at 514.557 kb on + strand, within BBR_RS12315 at 514.572 kb on + strand, within BBR_RS12315 at 514.592 kb on + strand, within BBR_RS12315 at 514.592 kb on + strand, within BBR_RS12315 at 514.600 kb on - strand, within BBR_RS12315 at 514.631 kb on - strand, within BBR_RS12315 at 514.642 kb on + strand, within BBR_RS12315 at 514.648 kb on + strand, within BBR_RS12315 at 514.650 kb on - strand, within BBR_RS12315 at 514.650 kb on - strand, within BBR_RS12315 at 514.650 kb on - strand, within BBR_RS12315 at 514.656 kb on - strand, within BBR_RS12315 at 514.691 kb on + strand, within BBR_RS12315 at 514.691 kb on + strand, within BBR_RS12315 at 514.691 kb on + strand, within BBR_RS12315 at 514.691 kb on + strand, within BBR_RS12315 at 514.691 kb on + strand, within BBR_RS12315 at 514.691 kb on + strand, within BBR_RS12315 at 514.699 kb on - strand, within BBR_RS12315 at 514.711 kb on - strand, within BBR_RS12315 at 514.758 kb on + strand, within BBR_RS12315 at 514.761 kb on - strand, within BBR_RS12315 at 514.768 kb on + strand, within BBR_RS12315 at 514.800 kb on + strand, within BBR_RS12315 at 514.822 kb on - strand, within BBR_RS12315 at 514.822 kb on - strand, within BBR_RS12315 at 514.827 kb on - strand, within BBR_RS12315 at 514.827 kb on - strand, within BBR_RS12315 at 514.847 kb on - strand, within BBR_RS12315 at 514.852 kb on - strand, within BBR_RS12315 at 514.864 kb on + strand, within BBR_RS12315 at 514.864 kb on + strand, within BBR_RS12315 at 514.872 kb on - strand, within BBR_RS12315
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 511,242 - BBR_RS12305 0.44 -1.1 511,254 - BBR_RS12305 0.45 +1.0 511,300 + BBR_RS12305 0.48 -0.7 511,410 + BBR_RS12305 0.56 -0.5 511,436 + BBR_RS12305 0.58 -0.3 511,507 - BBR_RS12305 0.64 -2.3 511,547 + BBR_RS12305 0.67 -2.0 511,571 - BBR_RS12305 0.69 -1.1 511,573 - BBR_RS12305 0.69 -2.0 511,622 + BBR_RS12305 0.72 -2.4 511,622 + BBR_RS12305 0.72 -0.5 511,635 - BBR_RS12305 0.73 -0.5 511,644 - BBR_RS12305 0.74 -1.4 511,701 + BBR_RS12305 0.78 -1.0 511,701 + BBR_RS12305 0.78 -1.1 511,718 + BBR_RS12305 0.80 -1.3 511,744 - BBR_RS12305 0.82 -2.0 511,751 + BBR_RS12305 0.82 -1.3 511,758 + BBR_RS12305 0.83 -1.2 511,775 + BBR_RS12305 0.84 +0.7 511,777 + BBR_RS12305 0.84 -1.3 511,793 + BBR_RS12305 0.85 +2.0 511,852 + BBR_RS12305 0.90 -1.8 511,860 - -3.0 511,865 + -2.1 511,875 - -2.3 511,886 + -1.4 511,925 - -1.6 511,941 - -0.1 511,943 + -0.8 511,943 + -0.4 511,943 + -1.3 511,943 + +0.4 511,943 + -1.6 511,943 + -1.7 511,943 + -0.9 511,943 + -1.7 511,951 - -1.7 511,951 - +1.0 511,965 + -1.3 511,970 + +0.2 511,970 + -1.0 511,978 - -0.4 512,039 - -0.9 512,051 + +0.7 512,057 - +2.1 512,062 - +0.8 512,062 - +1.6 512,063 - -1.9 512,087 - -0.8 512,112 - +1.8 512,159 - +1.5 512,188 - +1.6 512,235 + +1.7 512,258 - -0.6 512,285 - -1.4 512,288 + -2.1 512,296 - +0.4 512,321 + -0.9 512,329 - +1.0 512,329 - +0.7 512,329 - -1.7 512,341 + +1.7 512,422 + BBR_RS12310 0.11 -1.4 512,435 - BBR_RS12310 0.12 -0.7 512,559 - BBR_RS12310 0.19 +2.0 513,898 - -1.6 513,979 - BBR_RS20690 0.22 -0.9 513,979 - BBR_RS20690 0.22 +1.8 514,043 + BBR_RS20690 0.54 -1.5 514,090 - BBR_RS20690 0.77 -1.5 514,152 + +0.5 514,166 + -0.2 514,166 + +0.2 514,200 + +1.6 514,281 + +2.1 514,289 - -1.3 514,319 - -0.7 514,359 + BBR_RS12315 0.12 -0.1 514,437 + BBR_RS12315 0.20 +0.3 514,439 + BBR_RS12315 0.21 +1.3 514,439 + BBR_RS12315 0.21 -1.0 514,441 + BBR_RS12315 0.21 -0.3 514,445 - BBR_RS12315 0.21 -2.1 514,445 - BBR_RS12315 0.21 +2.6 514,445 - BBR_RS12315 0.21 +1.3 514,445 - BBR_RS12315 0.21 +0.6 514,445 - BBR_RS12315 0.21 -0.2 514,452 - BBR_RS12315 0.22 -1.0 514,469 + BBR_RS12315 0.24 +1.1 514,482 - BBR_RS12315 0.25 -1.6 514,482 - BBR_RS12315 0.25 -2.1 514,496 + BBR_RS12315 0.27 -1.2 514,511 - BBR_RS12315 0.29 +2.8 514,534 - BBR_RS12315 0.31 +0.8 514,550 - BBR_RS12315 0.33 +2.2 514,557 + BBR_RS12315 0.34 +2.4 514,572 + BBR_RS12315 0.35 -0.4 514,592 + BBR_RS12315 0.38 -0.1 514,592 + BBR_RS12315 0.38 +0.5 514,600 - BBR_RS12315 0.38 -0.6 514,631 - BBR_RS12315 0.42 -1.9 514,642 + BBR_RS12315 0.43 +1.5 514,648 + BBR_RS12315 0.44 +1.3 514,650 - BBR_RS12315 0.44 -0.7 514,650 - BBR_RS12315 0.44 -2.6 514,650 - BBR_RS12315 0.44 +0.5 514,656 - BBR_RS12315 0.45 +2.3 514,691 + BBR_RS12315 0.48 -1.9 514,691 + BBR_RS12315 0.48 +0.2 514,691 + BBR_RS12315 0.48 +1.3 514,691 + BBR_RS12315 0.48 -2.0 514,691 + BBR_RS12315 0.48 -0.6 514,691 + BBR_RS12315 0.48 -0.3 514,699 - BBR_RS12315 0.49 -0.8 514,711 - BBR_RS12315 0.51 -0.0 514,758 + BBR_RS12315 0.56 +1.8 514,761 - BBR_RS12315 0.56 -1.2 514,768 + BBR_RS12315 0.57 -1.0 514,800 + BBR_RS12315 0.60 +0.6 514,822 - BBR_RS12315 0.63 +1.4 514,822 - BBR_RS12315 0.63 +1.3 514,827 - BBR_RS12315 0.63 +0.2 514,827 - BBR_RS12315 0.63 -0.8 514,847 - BBR_RS12315 0.66 -0.3 514,852 - BBR_RS12315 0.66 -0.8 514,864 + BBR_RS12315 0.67 -1.7 514,864 + BBR_RS12315 0.67 -1.3 514,872 - BBR_RS12315 0.68 -0.4
Or see this region's nucleotide sequence