Experiment: cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12250 and BBR_RS12255 are separated by 134 nucleotides BBR_RS12255 and BBR_RS12260 are separated by 461 nucleotides
BBR_RS12250: BBR_RS12250 - ATP-binding protein of ABC transporter system, at 499,238 to 499,948
_RS12250
BBR_RS12255: BBR_RS12255 - hypothetical protein, at 500,083 to 500,997
_RS12255
BBR_RS12260: BBR_RS12260 - LemA family protein, at 501,459 to 502,046
_RS12260
Position (kb) 500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 499.169 kb on + strand at 499.236 kb on + strand at 499.260 kb on + strand at 499.276 kb on - strand at 499.278 kb on - strand at 499.291 kb on + strand at 499.291 kb on + strand at 499.291 kb on + strand at 499.291 kb on + strand at 499.291 kb on + strand at 499.291 kb on + strand at 499.296 kb on + strand at 499.299 kb on - strand at 499.299 kb on - strand at 499.299 kb on - strand at 499.299 kb on - strand at 499.320 kb on + strand, within BBR_RS12250 at 499.320 kb on + strand, within BBR_RS12250 at 499.328 kb on - strand, within BBR_RS12250 at 499.328 kb on - strand, within BBR_RS12250 at 499.337 kb on + strand, within BBR_RS12250 at 499.337 kb on + strand, within BBR_RS12250 at 499.337 kb on + strand, within BBR_RS12250 at 499.362 kb on + strand, within BBR_RS12250 at 499.362 kb on + strand, within BBR_RS12250 at 499.369 kb on - strand, within BBR_RS12250 at 499.374 kb on - strand, within BBR_RS12250 at 499.380 kb on + strand, within BBR_RS12250 at 499.381 kb on + strand, within BBR_RS12250 at 499.420 kb on + strand, within BBR_RS12250 at 499.433 kb on - strand, within BBR_RS12250 at 499.451 kb on - strand, within BBR_RS12250 at 499.457 kb on + strand, within BBR_RS12250 at 499.465 kb on - strand, within BBR_RS12250 at 499.467 kb on + strand, within BBR_RS12250 at 499.475 kb on + strand, within BBR_RS12250 at 499.475 kb on - strand, within BBR_RS12250 at 499.477 kb on + strand, within BBR_RS12250 at 499.483 kb on + strand, within BBR_RS12250 at 499.492 kb on + strand, within BBR_RS12250 at 499.492 kb on + strand, within BBR_RS12250 at 499.492 kb on + strand, within BBR_RS12250 at 499.500 kb on - strand, within BBR_RS12250 at 499.502 kb on - strand, within BBR_RS12250 at 499.559 kb on + strand, within BBR_RS12250 at 499.593 kb on + strand, within BBR_RS12250 at 499.593 kb on + strand, within BBR_RS12250 at 499.593 kb on + strand, within BBR_RS12250 at 499.599 kb on - strand, within BBR_RS12250 at 499.610 kb on + strand, within BBR_RS12250 at 499.627 kb on + strand, within BBR_RS12250 at 499.635 kb on - strand, within BBR_RS12250 at 499.670 kb on - strand, within BBR_RS12250 at 499.670 kb on - strand, within BBR_RS12250 at 499.683 kb on + strand, within BBR_RS12250 at 499.683 kb on + strand, within BBR_RS12250 at 499.683 kb on + strand, within BBR_RS12250 at 499.689 kb on + strand, within BBR_RS12250 at 499.706 kb on + strand, within BBR_RS12250 at 499.714 kb on - strand, within BBR_RS12250 at 499.714 kb on - strand, within BBR_RS12250 at 499.728 kb on + strand, within BBR_RS12250 at 499.740 kb on + strand, within BBR_RS12250 at 499.741 kb on - strand, within BBR_RS12250 at 499.749 kb on + strand, within BBR_RS12250 at 499.751 kb on + strand, within BBR_RS12250 at 499.757 kb on - strand, within BBR_RS12250 at 499.763 kb on + strand, within BBR_RS12250 at 499.763 kb on + strand, within BBR_RS12250 at 499.771 kb on - strand, within BBR_RS12250 at 499.772 kb on - strand, within BBR_RS12250 at 499.782 kb on - strand, within BBR_RS12250 at 499.788 kb on + strand, within BBR_RS12250 at 499.796 kb on - strand, within BBR_RS12250 at 499.798 kb on + strand, within BBR_RS12250 at 499.806 kb on - strand, within BBR_RS12250 at 499.845 kb on - strand, within BBR_RS12250 at 499.850 kb on - strand, within BBR_RS12250 at 499.851 kb on + strand, within BBR_RS12250 at 499.868 kb on + strand, within BBR_RS12250 at 499.868 kb on + strand, within BBR_RS12250 at 499.870 kb on - strand, within BBR_RS12250 at 499.963 kb on + strand at 499.966 kb on - strand at 499.986 kb on - strand at 499.991 kb on + strand at 499.991 kb on + strand at 500.030 kb on + strand at 500.035 kb on + strand at 500.043 kb on - strand at 500.043 kb on - strand at 500.054 kb on - strand at 500.056 kb on + strand at 500.101 kb on + strand at 500.101 kb on + strand at 500.101 kb on + strand at 500.109 kb on - strand at 500.109 kb on - strand at 500.109 kb on - strand at 500.114 kb on - strand at 500.135 kb on + strand at 500.135 kb on + strand at 500.171 kb on - strand at 500.240 kb on + strand, within BBR_RS12255 at 500.264 kb on + strand, within BBR_RS12255 at 500.264 kb on + strand, within BBR_RS12255 at 500.264 kb on + strand, within BBR_RS12255 at 500.272 kb on - strand, within BBR_RS12255 at 500.272 kb on - strand, within BBR_RS12255 at 500.277 kb on - strand, within BBR_RS12255 at 500.308 kb on + strand, within BBR_RS12255 at 500.343 kb on + strand, within BBR_RS12255 at 500.441 kb on - strand, within BBR_RS12255 at 500.448 kb on - strand, within BBR_RS12255 at 500.467 kb on + strand, within BBR_RS12255 at 500.472 kb on + strand, within BBR_RS12255 at 500.475 kb on - strand, within BBR_RS12255 at 500.475 kb on - strand, within BBR_RS12255 at 500.483 kb on + strand, within BBR_RS12255 at 500.487 kb on + strand, within BBR_RS12255 at 500.487 kb on + strand, within BBR_RS12255 at 500.488 kb on + strand, within BBR_RS12255 at 500.489 kb on + strand, within BBR_RS12255 at 500.491 kb on - strand, within BBR_RS12255 at 500.496 kb on - strand, within BBR_RS12255 at 500.496 kb on - strand, within BBR_RS12255 at 500.510 kb on - strand, within BBR_RS12255 at 500.512 kb on + strand, within BBR_RS12255 at 500.524 kb on - strand, within BBR_RS12255 at 500.563 kb on - strand, within BBR_RS12255 at 500.568 kb on - strand, within BBR_RS12255 at 500.568 kb on - strand, within BBR_RS12255 at 500.568 kb on - strand, within BBR_RS12255 at 500.631 kb on + strand, within BBR_RS12255 at 500.668 kb on + strand, within BBR_RS12255 at 500.668 kb on + strand, within BBR_RS12255 at 500.683 kb on + strand, within BBR_RS12255 at 500.683 kb on + strand, within BBR_RS12255 at 500.722 kb on + strand, within BBR_RS12255 at 500.730 kb on - strand, within BBR_RS12255 at 500.783 kb on - strand, within BBR_RS12255 at 500.811 kb on + strand, within BBR_RS12255 at 500.819 kb on - strand, within BBR_RS12255 at 500.819 kb on - strand, within BBR_RS12255 at 500.819 kb on - strand, within BBR_RS12255 at 500.819 kb on - strand, within BBR_RS12255 at 500.819 kb on - strand, within BBR_RS12255 at 500.981 kb on + strand at 500.986 kb on - strand at 500.995 kb on + strand at 501.006 kb on + strand at 501.006 kb on + strand at 501.016 kb on + strand at 501.020 kb on + strand at 501.024 kb on - strand at 501.024 kb on - strand at 501.024 kb on - strand at 501.030 kb on + strand at 501.046 kb on + strand at 501.202 kb on + strand at 501.210 kb on + strand at 501.210 kb on - strand at 501.212 kb on + strand at 501.217 kb on + strand at 501.225 kb on - strand at 501.226 kb on + strand at 501.226 kb on + strand at 501.226 kb on + strand at 501.244 kb on - strand at 501.244 kb on - strand at 501.244 kb on - strand at 501.244 kb on - strand at 501.260 kb on + strand at 501.336 kb on + strand at 501.360 kb on + strand at 501.362 kb on + strand at 501.362 kb on + strand at 501.362 kb on + strand at 501.364 kb on - strand at 501.370 kb on + strand at 501.370 kb on - strand at 501.375 kb on + strand at 501.375 kb on + strand at 501.383 kb on - strand at 501.383 kb on - strand at 501.414 kb on + strand at 501.451 kb on + strand at 501.463 kb on + strand at 501.476 kb on - strand at 501.492 kb on + strand at 501.540 kb on + strand, within BBR_RS12260 at 501.548 kb on - strand, within BBR_RS12260 at 501.548 kb on - strand, within BBR_RS12260 at 501.561 kb on + strand, within BBR_RS12260 at 501.561 kb on + strand, within BBR_RS12260 at 501.561 kb on + strand, within BBR_RS12260 at 501.569 kb on - strand, within BBR_RS12260 at 501.605 kb on + strand, within BBR_RS12260 at 501.622 kb on + strand, within BBR_RS12260 at 501.638 kb on + strand, within BBR_RS12260 at 501.644 kb on - strand, within BBR_RS12260 at 501.648 kb on + strand, within BBR_RS12260 at 501.656 kb on - strand, within BBR_RS12260 at 501.656 kb on - strand, within BBR_RS12260 at 501.661 kb on - strand, within BBR_RS12260 at 501.665 kb on + strand, within BBR_RS12260 at 501.670 kb on + strand, within BBR_RS12260 at 501.670 kb on + strand, within BBR_RS12260 at 501.678 kb on - strand, within BBR_RS12260 at 501.678 kb on - strand, within BBR_RS12260 at 501.697 kb on - strand, within BBR_RS12260 at 501.729 kb on + strand, within BBR_RS12260 at 501.730 kb on + strand, within BBR_RS12260 at 501.745 kb on - strand, within BBR_RS12260 at 501.747 kb on - strand, within BBR_RS12260 at 501.776 kb on + strand, within BBR_RS12260 at 501.778 kb on + strand, within BBR_RS12260 at 501.793 kb on + strand, within BBR_RS12260 at 501.795 kb on + strand, within BBR_RS12260 at 501.796 kb on - strand, within BBR_RS12260 at 501.796 kb on - strand, within BBR_RS12260 at 501.824 kb on + strand, within BBR_RS12260 at 501.825 kb on - strand, within BBR_RS12260 at 501.834 kb on + strand, within BBR_RS12260 at 501.910 kb on - strand, within BBR_RS12260 at 501.910 kb on - strand, within BBR_RS12260 at 501.926 kb on + strand, within BBR_RS12260 at 501.946 kb on - strand, within BBR_RS12260 at 501.990 kb on + strand at 501.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 499,169 + +0.1 499,236 + +1.0 499,260 + +1.0 499,276 - +1.7 499,278 - +1.2 499,291 + +0.4 499,291 + -2.2 499,291 + -0.9 499,291 + +0.9 499,291 + -0.9 499,291 + +1.0 499,296 + +1.4 499,299 - +0.6 499,299 - -2.1 499,299 - -1.5 499,299 - -1.8 499,320 + BBR_RS12250 0.12 +0.0 499,320 + BBR_RS12250 0.12 +0.4 499,328 - BBR_RS12250 0.13 -1.4 499,328 - BBR_RS12250 0.13 +1.9 499,337 + BBR_RS12250 0.14 +2.1 499,337 + BBR_RS12250 0.14 +0.9 499,337 + BBR_RS12250 0.14 +0.8 499,362 + BBR_RS12250 0.17 +0.7 499,362 + BBR_RS12250 0.17 -2.0 499,369 - BBR_RS12250 0.18 +1.5 499,374 - BBR_RS12250 0.19 +0.0 499,380 + BBR_RS12250 0.20 -2.0 499,381 + BBR_RS12250 0.20 -0.7 499,420 + BBR_RS12250 0.26 -2.2 499,433 - BBR_RS12250 0.27 +0.6 499,451 - BBR_RS12250 0.30 -1.4 499,457 + BBR_RS12250 0.31 -2.3 499,465 - BBR_RS12250 0.32 -0.9 499,467 + BBR_RS12250 0.32 +1.3 499,475 + BBR_RS12250 0.33 +2.2 499,475 - BBR_RS12250 0.33 -0.3 499,477 + BBR_RS12250 0.34 +1.4 499,483 + BBR_RS12250 0.34 -1.6 499,492 + BBR_RS12250 0.36 +1.8 499,492 + BBR_RS12250 0.36 +1.4 499,492 + BBR_RS12250 0.36 -0.8 499,500 - BBR_RS12250 0.37 -1.0 499,502 - BBR_RS12250 0.37 +0.8 499,559 + BBR_RS12250 0.45 +2.0 499,593 + BBR_RS12250 0.50 +2.2 499,593 + BBR_RS12250 0.50 -0.7 499,593 + BBR_RS12250 0.50 +1.2 499,599 - BBR_RS12250 0.51 -1.1 499,610 + BBR_RS12250 0.52 -0.5 499,627 + BBR_RS12250 0.55 +1.0 499,635 - BBR_RS12250 0.56 -1.1 499,670 - BBR_RS12250 0.61 -0.3 499,670 - BBR_RS12250 0.61 +1.0 499,683 + BBR_RS12250 0.63 -1.0 499,683 + BBR_RS12250 0.63 +0.4 499,683 + BBR_RS12250 0.63 +0.2 499,689 + BBR_RS12250 0.63 -2.3 499,706 + BBR_RS12250 0.66 +0.4 499,714 - BBR_RS12250 0.67 -1.8 499,714 - BBR_RS12250 0.67 -1.7 499,728 + BBR_RS12250 0.69 -0.2 499,740 + BBR_RS12250 0.71 +0.4 499,741 - BBR_RS12250 0.71 -1.7 499,749 + BBR_RS12250 0.72 -2.0 499,751 + BBR_RS12250 0.72 -2.5 499,757 - BBR_RS12250 0.73 +2.3 499,763 + BBR_RS12250 0.74 +2.0 499,763 + BBR_RS12250 0.74 -2.2 499,771 - BBR_RS12250 0.75 -0.8 499,772 - BBR_RS12250 0.75 -2.2 499,782 - BBR_RS12250 0.77 -0.1 499,788 + BBR_RS12250 0.77 -0.7 499,796 - BBR_RS12250 0.78 -0.9 499,798 + BBR_RS12250 0.79 -0.1 499,806 - BBR_RS12250 0.80 -2.3 499,845 - BBR_RS12250 0.85 +1.6 499,850 - BBR_RS12250 0.86 -0.4 499,851 + BBR_RS12250 0.86 +3.0 499,868 + BBR_RS12250 0.89 -0.4 499,868 + BBR_RS12250 0.89 +1.9 499,870 - BBR_RS12250 0.89 -2.0 499,963 + -1.1 499,966 - +0.8 499,986 - -0.9 499,991 + -0.1 499,991 + -0.1 500,030 + +1.0 500,035 + +1.2 500,043 - -2.3 500,043 - -1.8 500,054 - -0.6 500,056 + -3.3 500,101 + -1.4 500,101 + -1.2 500,101 + -1.8 500,109 - +3.0 500,109 - +1.3 500,109 - +3.2 500,114 - +2.2 500,135 + -1.1 500,135 + +1.3 500,171 - +1.8 500,240 + BBR_RS12255 0.17 -0.0 500,264 + BBR_RS12255 0.20 -1.3 500,264 + BBR_RS12255 0.20 +0.6 500,264 + BBR_RS12255 0.20 +1.5 500,272 - BBR_RS12255 0.21 -2.0 500,272 - BBR_RS12255 0.21 -1.5 500,277 - BBR_RS12255 0.21 -0.6 500,308 + BBR_RS12255 0.25 -0.3 500,343 + BBR_RS12255 0.28 +0.6 500,441 - BBR_RS12255 0.39 +2.7 500,448 - BBR_RS12255 0.40 -0.7 500,467 + BBR_RS12255 0.42 -2.2 500,472 + BBR_RS12255 0.43 -1.5 500,475 - BBR_RS12255 0.43 -1.9 500,475 - BBR_RS12255 0.43 -2.5 500,483 + BBR_RS12255 0.44 +0.7 500,487 + BBR_RS12255 0.44 -1.5 500,487 + BBR_RS12255 0.44 +0.0 500,488 + BBR_RS12255 0.44 +0.9 500,489 + BBR_RS12255 0.44 +0.5 500,491 - BBR_RS12255 0.45 -1.1 500,496 - BBR_RS12255 0.45 +0.5 500,496 - BBR_RS12255 0.45 -2.1 500,510 - BBR_RS12255 0.47 -0.6 500,512 + BBR_RS12255 0.47 +1.1 500,524 - BBR_RS12255 0.48 +0.7 500,563 - BBR_RS12255 0.52 -1.6 500,568 - BBR_RS12255 0.53 +0.2 500,568 - BBR_RS12255 0.53 +0.3 500,568 - BBR_RS12255 0.53 +1.4 500,631 + BBR_RS12255 0.60 -2.6 500,668 + BBR_RS12255 0.64 -1.2 500,668 + BBR_RS12255 0.64 +2.0 500,683 + BBR_RS12255 0.66 -0.1 500,683 + BBR_RS12255 0.66 -0.7 500,722 + BBR_RS12255 0.70 +0.1 500,730 - BBR_RS12255 0.71 -2.1 500,783 - BBR_RS12255 0.77 -0.9 500,811 + BBR_RS12255 0.80 -1.3 500,819 - BBR_RS12255 0.80 -1.1 500,819 - BBR_RS12255 0.80 -1.6 500,819 - BBR_RS12255 0.80 -2.7 500,819 - BBR_RS12255 0.80 +0.2 500,819 - BBR_RS12255 0.80 +0.4 500,981 + -1.7 500,986 - +1.6 500,995 + +0.6 501,006 + -1.4 501,006 + +1.0 501,016 + -0.9 501,020 + +1.5 501,024 - -0.0 501,024 - +1.6 501,024 - -1.4 501,030 + -0.7 501,046 + -0.7 501,202 + +1.1 501,210 + +0.6 501,210 - +0.9 501,212 + +0.8 501,217 + +0.4 501,225 - +0.6 501,226 + +1.7 501,226 + -1.3 501,226 + +1.4 501,244 - -2.6 501,244 - +0.0 501,244 - -0.6 501,244 - +1.7 501,260 + +2.1 501,336 + +0.0 501,360 + +1.8 501,362 + +1.3 501,362 + -1.9 501,362 + +1.7 501,364 - -0.6 501,370 + +0.9 501,370 - -1.6 501,375 + -2.5 501,375 + +1.7 501,383 - -0.9 501,383 - +0.0 501,414 + -1.3 501,451 + +0.7 501,463 + -1.2 501,476 - -0.7 501,492 + -3.1 501,540 + BBR_RS12260 0.14 +0.2 501,548 - BBR_RS12260 0.15 +0.9 501,548 - BBR_RS12260 0.15 +0.5 501,561 + BBR_RS12260 0.17 +2.9 501,561 + BBR_RS12260 0.17 -1.5 501,561 + BBR_RS12260 0.17 -1.9 501,569 - BBR_RS12260 0.19 -1.0 501,605 + BBR_RS12260 0.25 +1.2 501,622 + BBR_RS12260 0.28 +0.5 501,638 + BBR_RS12260 0.30 +1.0 501,644 - BBR_RS12260 0.31 -0.6 501,648 + BBR_RS12260 0.32 +1.4 501,656 - BBR_RS12260 0.34 +1.2 501,656 - BBR_RS12260 0.34 +0.2 501,661 - BBR_RS12260 0.34 +0.2 501,665 + BBR_RS12260 0.35 +1.2 501,670 + BBR_RS12260 0.36 +0.6 501,670 + BBR_RS12260 0.36 -2.0 501,678 - BBR_RS12260 0.37 -1.0 501,678 - BBR_RS12260 0.37 +1.8 501,697 - BBR_RS12260 0.40 -0.3 501,729 + BBR_RS12260 0.46 +1.1 501,730 + BBR_RS12260 0.46 +1.7 501,745 - BBR_RS12260 0.49 +1.2 501,747 - BBR_RS12260 0.49 -0.7 501,776 + BBR_RS12260 0.54 +1.4 501,778 + BBR_RS12260 0.54 +0.8 501,793 + BBR_RS12260 0.57 -0.8 501,795 + BBR_RS12260 0.57 +0.5 501,796 - BBR_RS12260 0.57 +0.6 501,796 - BBR_RS12260 0.57 +1.0 501,824 + BBR_RS12260 0.62 -2.0 501,825 - BBR_RS12260 0.62 -0.8 501,834 + BBR_RS12260 0.64 +1.3 501,910 - BBR_RS12260 0.77 -2.1 501,910 - BBR_RS12260 0.77 -0.7 501,926 + BBR_RS12260 0.79 -0.8 501,946 - BBR_RS12260 0.83 +1.1 501,990 + -2.3 501,995 + -1.5
Or see this region's nucleotide sequence