Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10645

Experiment: cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse1; day5; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
107,933	+		BBR_RS10640	0.28	+1.8
107,933	+		BBR_RS10640	0.28	-0.8
107,934	+		BBR_RS10640	0.28	-0.7
107,938	+		BBR_RS10640	0.28	+1.1
107,941	-		BBR_RS10640	0.28	-3.0
107,942	-		BBR_RS10640	0.28	-1.5
107,942	-		BBR_RS10640	0.28	+0.1
107,957	-		BBR_RS10640	0.30	+1.4
107,960	+		BBR_RS10640	0.30	-1.2
107,998	-		BBR_RS10640	0.34	-2.5
108,017	+		BBR_RS10640	0.35	-1.9
108,027	-		BBR_RS10640	0.36	-1.6
108,031	+		BBR_RS10640	0.37	+0.1
108,031	+		BBR_RS10640	0.37	-1.6
108,087	+		BBR_RS10640	0.42	-0.6
108,087	+		BBR_RS10640	0.42	-0.2
108,095	+		BBR_RS10640	0.42	-2.6
108,100	-		BBR_RS10640	0.43	+1.0
108,100	-		BBR_RS10640	0.43	+0.1
108,100	-		BBR_RS10640	0.43	+0.7
108,103	-		BBR_RS10640	0.43	+0.5
108,112	+		BBR_RS10640	0.44	+1.3
108,122	+		BBR_RS10640	0.45	+0.1
108,133	-		BBR_RS10640	0.46	-1.5
108,151	+		BBR_RS10640	0.48	+0.2
108,154	-		BBR_RS10640	0.48	-0.1
108,159	-		BBR_RS10640	0.48	+1.6
108,170	+		BBR_RS10640	0.49	+1.1
108,170	+		BBR_RS10640	0.49	-1.8
108,170	+		BBR_RS10640	0.49	-1.0
108,172	+		BBR_RS10640	0.50	+1.8
108,172	+		BBR_RS10640	0.50	+1.0
108,178	-		BBR_RS10640	0.50	+0.5
108,178	-		BBR_RS10640	0.50	-2.4
108,178	-		BBR_RS10640	0.50	+0.6
108,178	-		BBR_RS10640	0.50	-0.6
108,178	-		BBR_RS10640	0.50	+0.3
108,178	-		BBR_RS10640	0.50	-0.9
108,178	-		BBR_RS10640	0.50	+0.3
108,178	-		BBR_RS10640	0.50	-0.0
108,178	-		BBR_RS10640	0.50	+0.2
108,178	-		BBR_RS10640	0.50	+1.5
108,179	-		BBR_RS10640	0.50	+0.4
108,203	-		BBR_RS10640	0.52	+1.0
108,217	+		BBR_RS10640	0.54	-1.3
108,226	+		BBR_RS10640	0.54	+1.5
108,228	+		BBR_RS10640	0.55	+0.6
108,228	+		BBR_RS10640	0.55	-1.8
108,229	-		BBR_RS10640	0.55	-2.5
108,234	+		BBR_RS10640	0.55	+2.1
108,234	-		BBR_RS10640	0.55	-1.3
108,236	-		BBR_RS10640	0.55	+0.5
108,236	-		BBR_RS10640	0.55	+1.2
108,236	-		BBR_RS10640	0.55	-0.1
108,240	+		BBR_RS10640	0.56	+1.9
108,240	+		BBR_RS10640	0.56	-1.7
108,240	+		BBR_RS10640	0.56	+0.6
108,248	-		BBR_RS10640	0.57	-1.6
108,248	-		BBR_RS10640	0.57	+0.6
108,248	-		BBR_RS10640	0.57	-0.5
108,252	+		BBR_RS10640	0.57	-2.3
108,255	-		BBR_RS10640	0.57	+1.4
108,255	-		BBR_RS10640	0.57	+0.0
108,260	-		BBR_RS10640	0.58	+0.4
108,260	-		BBR_RS10640	0.58	+0.9
108,260	-		BBR_RS10640	0.58	-1.1
108,261	+		BBR_RS10640	0.58	+1.1
108,269	+		BBR_RS10640	0.58	-0.1
108,269	+		BBR_RS10640	0.58	+0.4
108,272	-		BBR_RS10640	0.59	-2.9
108,273	+		BBR_RS10640	0.59	+1.1
108,273	+		BBR_RS10640	0.59	-2.6
108,273	+		BBR_RS10640	0.59	+1.0
108,273	+		BBR_RS10640	0.59	-0.2
108,274	+		BBR_RS10640	0.59	+3.4
108,274	+		BBR_RS10640	0.59	-2.9
108,274	+		BBR_RS10640	0.59	-0.9
108,274	-		BBR_RS10640	0.59	-0.3
108,281	-		BBR_RS10640	0.60	+0.7
108,282	-		BBR_RS10640	0.60	+0.1
108,298	+		BBR_RS10640	0.61	-2.9
108,298	+		BBR_RS10640	0.61	-0.4
108,298	+		BBR_RS10640	0.61	-2.1
108,306	-		BBR_RS10640	0.62	-1.8
108,306	-		BBR_RS10640	0.62	+2.5
108,308	+		BBR_RS10640	0.62	-0.4
108,352	+		BBR_RS10640	0.66	-1.4
108,352	+		BBR_RS10640	0.66	-0.2
108,352	+		BBR_RS10640	0.66	-0.7
108,360	-		BBR_RS10640	0.67	+0.8
108,360	-		BBR_RS10640	0.67	-0.7
108,360	-		BBR_RS10640	0.67	-2.0
108,360	-		BBR_RS10640	0.67	-1.3
108,360	-		BBR_RS10640	0.67	+0.7
108,360	-		BBR_RS10640	0.67	+0.7
108,360	-		BBR_RS10640	0.67	+0.5
108,404	+		BBR_RS10640	0.71	-0.2
108,410	+		BBR_RS10640	0.71	-3.0
108,412	-		BBR_RS10640	0.72	+0.1
108,415	+		BBR_RS10640	0.72	+0.0
108,418	-		BBR_RS10640	0.72	+0.9
108,418	-		BBR_RS10640	0.72	-0.9
108,418	-		BBR_RS10640	0.72	+0.8
108,418	-		BBR_RS10640	0.72	-0.5
108,425	+		BBR_RS10640	0.73	-1.6
108,431	-		BBR_RS10640	0.73	+0.2
108,434	+		BBR_RS10640	0.74	-0.1
108,441	-		BBR_RS10640	0.74	-0.2
108,462	+		BBR_RS10640	0.76	+0.2
108,465	+		BBR_RS10640	0.76	+1.4
108,465	+		BBR_RS10640	0.76	+0.6
108,467	+		BBR_RS10640	0.77	-2.3
108,470	-		BBR_RS10640	0.77	+0.7
108,472	+		BBR_RS10640	0.77	-2.6
108,473	-		BBR_RS10640	0.77	+0.2
108,474	+		BBR_RS10640	0.77	-0.4
108,480	-		BBR_RS10640	0.78	-1.2
108,480	-		BBR_RS10640	0.78	-2.0
108,488	-		BBR_RS10640	0.78	-2.4
108,497	-		BBR_RS10640	0.79	+0.3
108,499	+		BBR_RS10640	0.79	-1.0
108,499	+		BBR_RS10640	0.79	+1.4
108,499	+		BBR_RS10640	0.79	-0.1
108,500	-		BBR_RS10640	0.80	+0.9
108,507	-		BBR_RS10640	0.80	+0.1
108,507	-		BBR_RS10640	0.80	+1.0
108,512	+		BBR_RS10640	0.81	+2.2
108,520	-		BBR_RS10640	0.81	+0.9
108,520	-		BBR_RS10640	0.81	+0.1
108,520	-		BBR_RS10640	0.81	-0.2
108,520	-		BBR_RS10640	0.81	-2.6
108,520	-		BBR_RS10640	0.81	+0.7
108,537	-		BBR_RS10640	0.83	+1.2
108,547	-		BBR_RS10640	0.84	-1.8
108,549	+		BBR_RS10640	0.84	+0.2
108,549	+		BBR_RS10640	0.84	-0.2
108,554	+		BBR_RS10640	0.85	-3.3
108,557	-		BBR_RS10640	0.85	-2.3
108,562	-		BBR_RS10640	0.85	-0.3
108,580	-		BBR_RS10640	0.87	+2.5
108,580	-		BBR_RS10640	0.87	-2.8
108,581	-		BBR_RS10640	0.87	-0.5
108,601	+		BBR_RS10640	0.89	+1.3
108,605	+		BBR_RS10640	0.89	+0.7
108,605	+		BBR_RS10640	0.89	-0.1
108,605	+		BBR_RS10640	0.89	-1.7
108,605	+		BBR_RS10640	0.89	+0.2
108,607	-		BBR_RS10640	0.89	-2.1
108,610	+		BBR_RS10640	0.90	+0.6
108,613	-				-1.4
108,613	-				+2.1
108,613	-				+0.6
108,649	-				+0.2
108,667	-				-0.7
108,667	-				+1.3
108,667	-				+0.7
108,683	-				+1.3
108,735	-				-0.7
108,752	+				-2.3
108,760	-				-1.8
108,781	+				-3.0
108,801	+				-2.6
108,801	+				-3.6
108,802	+				-2.5
108,809	-				-2.1
108,814	-				-3.3
108,814	-				-2.4
108,817	+				+0.4
108,817	-				+0.1
108,824	-				+0.3
108,824	-				+0.7
108,825	-				-1.8
108,825	-				-2.7
108,827	+				-0.2
108,838	+				-1.7
108,838	+				-0.7
108,848	+				-0.9
108,862	+				-0.4
108,877	+				-0.5
108,905	+				-2.9
108,907	-				-2.9
108,913	+				-2.2
108,913	+				+1.0
108,918	+				-2.0
108,921	-				-3.3
108,921	-				-2.7
108,930	+				-2.3
108,938	-				-1.8
108,967	-				-1.4
108,992	-		BBR_RS10645	0.14	-1.6
108,992	-		BBR_RS10645	0.14	+1.4
108,992	-		BBR_RS10645	0.14	+0.7
109,027	-		BBR_RS10645	0.21	-0.4
109,046	+		BBR_RS10645	0.25	-1.6
109,046	+		BBR_RS10645	0.25	-1.4
109,046	+		BBR_RS10645	0.25	-0.5
109,046	+		BBR_RS10645	0.25	+1.4
109,046	+		BBR_RS10645	0.25	-0.2
109,046	+		BBR_RS10645	0.25	-3.2
109,046	+		BBR_RS10645	0.25	-2.1
109,046	-		BBR_RS10645	0.25	-1.7
109,048	+		BBR_RS10645	0.25	+1.3
109,051	+		BBR_RS10645	0.26	-2.9
109,052	-		BBR_RS10645	0.26	-1.7
109,052	-		BBR_RS10645	0.26	-0.0
109,054	-		BBR_RS10645	0.26	-1.5
109,054	-		BBR_RS10645	0.26	-2.8
109,054	-		BBR_RS10645	0.26	-2.8
109,054	-		BBR_RS10645	0.26	-1.8
109,054	-		BBR_RS10645	0.26	-0.6
109,056	+		BBR_RS10645	0.27	-0.7
109,056	+		BBR_RS10645	0.27	-2.5
109,061	+		BBR_RS10645	0.28	-2.2
109,061	+		BBR_RS10645	0.28	-2.7
109,065	+		BBR_RS10645	0.28	-2.3
109,071	+		BBR_RS10645	0.30	-0.8
109,071	+		BBR_RS10645	0.30	-0.9
109,071	+		BBR_RS10645	0.30	-0.8
109,074	-		BBR_RS10645	0.30	-0.4
109,079	-		BBR_RS10645	0.31	-2.8
109,110	+		BBR_RS10645	0.37	-1.1
109,116	+		BBR_RS10645	0.38	-3.3
109,126	+		BBR_RS10645	0.40	-1.1
109,129	-		BBR_RS10645	0.41	+1.3
109,142	+		BBR_RS10645	0.44	-1.9
109,195	+		BBR_RS10645	0.54	-1.7
109,201	+		BBR_RS10645	0.55	-2.4
109,206	+		BBR_RS10645	0.56	-1.8
109,206	+		BBR_RS10645	0.56	-1.3
109,209	-		BBR_RS10645	0.57	-3.1
109,209	-		BBR_RS10645	0.57	-1.5
109,211	+		BBR_RS10645	0.57	-1.6
109,214	-		BBR_RS10645	0.58	-1.1
109,219	-		BBR_RS10645	0.59	+0.9
109,219	-		BBR_RS10645	0.59	-2.6
109,221	+		BBR_RS10645	0.59	+1.8
109,221	-		BBR_RS10645	0.59	-1.7
109,226	-		BBR_RS10645	0.60	-1.2
109,226	-		BBR_RS10645	0.60	-2.4
109,249	+		BBR_RS10645	0.65	+0.1
109,264	+		BBR_RS10645	0.68	-1.8
109,266	+		BBR_RS10645	0.68	-0.7
109,266	+		BBR_RS10645	0.68	-1.3
109,266	+		BBR_RS10645	0.68	+0.2
109,266	+		BBR_RS10645	0.68	-1.2
109,266	+		BBR_RS10645	0.68	-0.3
109,266	+		BBR_RS10645	0.68	+0.1
109,266	+		BBR_RS10645	0.68	-2.2
109,266	+		BBR_RS10645	0.68	-2.8
109,266	+		BBR_RS10645	0.68	-2.1
109,266	+		BBR_RS10645	0.68	-2.8
109,272	-		BBR_RS10645	0.69	-2.6
109,272	-		BBR_RS10645	0.69	-0.5
109,272	-		BBR_RS10645	0.69	-2.2
109,274	-		BBR_RS10645	0.70	+0.4
109,274	-		BBR_RS10645	0.70	-1.4
109,283	+		BBR_RS10645	0.72	-1.6
109,285	+		BBR_RS10645	0.72	-2.0
109,285	+		BBR_RS10645	0.72	-2.5
109,297	-		BBR_RS10645	0.74	-1.6
109,297	-		BBR_RS10645	0.74	-0.6
109,297	-		BBR_RS10645	0.74	-1.3
109,297	-		BBR_RS10645	0.74	-1.4
109,307	+		BBR_RS10645	0.76	-1.3
109,308	+		BBR_RS10645	0.77	-1.8
109,316	+		BBR_RS10645	0.78	-1.3
109,338	+		BBR_RS10645	0.83	-2.4
109,341	+		BBR_RS10645	0.83	-2.8
109,341	+		BBR_RS10645	0.83	-0.9
109,363	-		BBR_RS10645	0.88	-1.2
109,379	-				-2.3
109,389	+				-1.1
109,389	+				-0.7
109,389	+				-3.4
109,393	-				-2.5
109,397	-				-3.1
109,397	-				+0.4
109,397	-				-0.7
109,397	-				-3.3
109,407	+				-1.2
109,409	+				-2.6
109,414	+				-2.4
109,414	+				+0.6
109,424	+				-2.7
109,424	+				-0.8
109,439	+				-3.1
109,445	-				-2.1
109,448	+				+0.1
109,448	+				-0.9
109,448	+				+2.2
109,448	+				-3.2
109,448	+				-2.9
109,456	-				-0.7
109,456	-				-2.1
109,459	+				-1.6
109,459	+				-1.1
109,461	+				+0.5
109,461	+				+1.7
109,471	+				+1.7
109,472	+				+1.5
109,479	-				+0.3
109,482	+				-2.2
109,484	+				+1.6
109,484	+				-0.7
109,484	+				+0.1
109,490	-				-1.8
109,492	-				+1.9
109,492	-				-1.1
109,492	-				-3.1
109,495	+				+0.3
109,495	+				-1.4
109,495	+				-1.4
109,495	+				-1.6
109,502	-				-1.5
109,503	-				-2.9
109,504	+				+0.3
109,504	+				+1.8
109,504	+				+0.5
109,507	+				-1.8
109,507	+				-1.2
109,509	+				+0.1
109,512	-				-1.5
109,512	-				+0.5
109,512	-				-2.2
109,512	-				-2.2
109,513	+				+1.3
109,517	-				+1.6
109,518	+				-0.7
109,531	-				-2.6
109,541	-				-1.4
109,550	+				+0.8
109,574	-				+0.7
109,579	-				+1.3
109,579	-				-0.0
109,591	-				-1.7
109,592	+				-1.8
109,592	+				-1.9
109,596	-				-0.7
109,600	-				-0.5
109,606	+				+0.7
109,621	-				-2.8
109,654	+				-1.1
109,661	+				+0.7
109,662	-				-1.6
109,662	-				+0.2
109,663	-				-0.8
109,669	-				-0.4
109,669	-				-0.9
109,669	-				-0.9
109,669	-				-2.3
109,670	-				-0.4
109,671	-				+0.3
109,681	-				+0.3
109,688	+				-2.9
109,688	+				-2.6
109,688	+				+0.6
109,688	+				+0.8
109,702	+				-1.9
109,702	+				+0.6
109,702	+				+0.1
109,702	+				+1.4
109,724	+				+0.3
109,732	-				-1.1
109,732	-				+1.5
109,732	-				+0.2
109,745	+				-2.8
109,745	+				+1.1
109,745	+				-1.2
109,745	+				-2.2
109,745	+				-0.1
109,745	+				+1.3
109,745	+				-1.1
109,745	+				-0.7
109,745	+				-0.2
109,745	+				-2.5
109,745	+				-2.2
109,745	+				-1.9
109,745	+				+0.8
109,745	+				-2.4
109,745	+				-0.4
109,745	-				+3.5
109,753	-				+0.4
109,753	-				-0.1
109,753	-				+0.3
109,753	-				+1.4
109,753	-				-1.9
109,753	-				-0.2
109,753	-				+1.7
109,753	-				-2.0
109,753	-				+0.8
109,753	-				-0.9
109,753	-				+0.7
109,753	-				-0.2
109,753	-				+0.3
109,759	+				-0.7
109,759	+				+0.4
109,779	+				-0.6
109,779	+				+0.1
109,787	-				-0.7
109,787	-				-2.5
109,790	+				-0.6
109,803	-				-0.5
109,803	-				+1.2
109,830	+				+0.2
109,856	-				-2.3
109,879	-				-2.8
109,885	-				-1.0
109,885	-				+1.2
109,911	+		BBR_RS10650	0.11	-0.9
109,911	+		BBR_RS10650	0.11	-2.3
109,918	+		BBR_RS10650	0.12	+1.8
109,919	-		BBR_RS10650	0.12	-1.0
109,933	+		BBR_RS10650	0.14	-1.6
109,935	+		BBR_RS10650	0.14	-1.6
109,943	-		BBR_RS10650	0.15	+0.4
109,951	-		BBR_RS10650	0.15	-1.6
109,951	-		BBR_RS10650	0.15	-0.9
109,963	+		BBR_RS10650	0.17	+0.1
109,975	+		BBR_RS10650	0.18	+0.8
109,976	-		BBR_RS10650	0.18	+1.6
109,976	-		BBR_RS10650	0.18	+1.3
109,985	+		BBR_RS10650	0.19	+2.8
109,985	+		BBR_RS10650	0.19	+0.5
109,990	+		BBR_RS10650	0.19	-1.1
109,993	-		BBR_RS10650	0.20	+0.2
109,998	-		BBR_RS10650	0.20	-1.7
109,998	-		BBR_RS10650	0.20	+1.3
109,998	-		BBR_RS10650	0.20	+0.7
109,998	-		BBR_RS10650	0.20	-0.2
109,998	-		BBR_RS10650	0.20	-1.8
110,009	+		BBR_RS10650	0.21	+1.2
110,009	+		BBR_RS10650	0.21	+1.8
110,009	+		BBR_RS10650	0.21	-0.9
110,009	+		BBR_RS10650	0.21	-1.6
110,017	-		BBR_RS10650	0.22	+0.4
110,017	-		BBR_RS10650	0.22	-0.9
110,031	+		BBR_RS10650	0.24	+0.0
110,044	-		BBR_RS10650	0.25	-2.1
110,073	+		BBR_RS10650	0.28	+0.5
110,073	+		BBR_RS10650	0.28	+1.6
110,073	+		BBR_RS10650	0.28	-1.8
110,076	-		BBR_RS10650	0.28	+0.7
110,093	-		BBR_RS10650	0.30	+1.6
110,131	+		BBR_RS10650	0.34	-2.9
110,131	-		BBR_RS10650	0.34	+1.1
110,131	-		BBR_RS10650	0.34	-0.4
110,158	-		BBR_RS10650	0.37	-2.0
110,158	-		BBR_RS10650	0.37	+1.4
110,159	+		BBR_RS10650	0.37	-0.8
110,164	+		BBR_RS10650	0.37	+0.0
110,164	+		BBR_RS10650	0.37	+0.7
110,180	-		BBR_RS10650	0.39	-1.9
110,202	-		BBR_RS10650	0.41	-0.1
110,223	+		BBR_RS10650	0.43	+0.5
110,223	+		BBR_RS10650	0.43	+0.8
110,231	+		BBR_RS10650	0.44	+0.7
110,231	-		BBR_RS10650	0.44	-2.4
110,231	-		BBR_RS10650	0.44	+1.1
110,231	-		BBR_RS10650	0.44	+1.0
110,233	+		BBR_RS10650	0.44	-2.5
110,233	+		BBR_RS10650	0.44	-0.9
110,233	-		BBR_RS10650	0.44	-1.2
110,239	-		BBR_RS10650	0.45	-0.2
110,240	+		BBR_RS10650	0.45	-0.8
110,241	-		BBR_RS10650	0.45	+0.2
110,255	+		BBR_RS10650	0.46	+0.8
110,262	-		BBR_RS10650	0.47	+0.4
110,265	+		BBR_RS10650	0.48	-1.9
110,273	-		BBR_RS10650	0.48	-1.6
110,277	+		BBR_RS10650	0.49	+1.1
110,290	+		BBR_RS10650	0.50	-1.1
110,290	+		BBR_RS10650	0.50	-2.3
110,296	+		BBR_RS10650	0.51	+1.6
110,326	+		BBR_RS10650	0.54	+1.6
110,347	+		BBR_RS10650	0.56	+0.9
110,354	+		BBR_RS10650	0.57	+0.2
110,354	+		BBR_RS10650	0.57	+0.7
110,355	-		BBR_RS10650	0.57	-1.5
110,355	-		BBR_RS10650	0.57	-1.1
110,362	-		BBR_RS10650	0.57	+0.2
110,383	+		BBR_RS10650	0.60	+0.6
110,387	+		BBR_RS10650	0.60	+1.4
110,389	-		BBR_RS10650	0.60	+1.0
110,396	+		BBR_RS10650	0.61	+1.0
110,396	-		BBR_RS10650	0.61	-0.1
110,398	+		BBR_RS10650	0.61	+0.3
110,398	+		BBR_RS10650	0.61	+1.7
110,398	+		BBR_RS10650	0.61	+1.5
110,398	+		BBR_RS10650	0.61	+0.4
110,398	+		BBR_RS10650	0.61	+2.0
110,398	+		BBR_RS10650	0.61	-2.9
110,398	+		BBR_RS10650	0.61	+0.4
110,398	+		BBR_RS10650	0.61	+1.0
110,398	+		BBR_RS10650	0.61	-2.0
110,398	+		BBR_RS10650	0.61	-1.3
110,399	-		BBR_RS10650	0.61	-1.7
110,402	+		BBR_RS10650	0.61	-1.0
110,407	+		BBR_RS10650	0.62	-0.6
110,407	+		BBR_RS10650	0.62	+0.6
110,407	+		BBR_RS10650	0.62	+1.1
110,407	+		BBR_RS10650	0.62	-1.1
110,410	-		BBR_RS10650	0.62	+0.4
110,413	+		BBR_RS10650	0.63	+0.1
110,415	-		BBR_RS10650	0.63	+1.3
110,417	+		BBR_RS10650	0.63	+2.5
110,417	+		BBR_RS10650	0.63	-1.1
110,421	+		BBR_RS10650	0.63	+0.3
110,423	+		BBR_RS10650	0.64	+1.7
110,425	-		BBR_RS10650	0.64	-1.5