Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19445

Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,144,031	+		BBR_RS19440	0.29	-0.1
2,144,041	-		BBR_RS19440	0.29	-0.2
2,144,041	-		BBR_RS19440	0.29	-1.2
2,144,059	+		BBR_RS19440	0.31	-1.3
2,144,059	+		BBR_RS19440	0.31	+1.1
2,144,059	+		BBR_RS19440	0.31	+2.9
2,144,059	+		BBR_RS19440	0.31	+0.9
2,144,059	+		BBR_RS19440	0.31	+3.3
2,144,059	+		BBR_RS19440	0.31	+0.1
2,144,059	+		BBR_RS19440	0.31	-0.1
2,144,064	+		BBR_RS19440	0.31	-1.9
2,144,066	+		BBR_RS19440	0.31	-1.7
2,144,067	-		BBR_RS19440	0.31	+0.9
2,144,067	-		BBR_RS19440	0.31	-0.7
2,144,067	-		BBR_RS19440	0.31	+0.4
2,144,067	-		BBR_RS19440	0.31	+1.2
2,144,067	-		BBR_RS19440	0.31	+0.3
2,144,067	-		BBR_RS19440	0.31	+0.8
2,144,067	-		BBR_RS19440	0.31	-1.0
2,144,067	-		BBR_RS19440	0.31	-0.2
2,144,067	-		BBR_RS19440	0.31	-1.1
2,144,067	-		BBR_RS19440	0.31	-0.1
2,144,074	-		BBR_RS19440	0.32	+1.6
2,144,096	-		BBR_RS19440	0.34	-0.6
2,144,111	-		BBR_RS19440	0.35	+0.2
2,144,122	-		BBR_RS19440	0.36	+0.1
2,144,125	-		BBR_RS19440	0.36	+1.4
2,144,125	-		BBR_RS19440	0.36	+0.3
2,144,155	+		BBR_RS19440	0.38	-0.4
2,144,156	-		BBR_RS19440	0.38	+0.5
2,144,163	-		BBR_RS19440	0.39	+1.9
2,144,171	-		BBR_RS19440	0.40	-2.2
2,144,178	-		BBR_RS19440	0.40	+0.6
2,144,180	+		BBR_RS19440	0.40	-0.9
2,144,180	+		BBR_RS19440	0.40	+0.3
2,144,180	+		BBR_RS19440	0.40	+1.5
2,144,180	+		BBR_RS19440	0.40	+0.3
2,144,180	+		BBR_RS19440	0.40	+0.2
2,144,182	+		BBR_RS19440	0.41	+0.4
2,144,182	+		BBR_RS19440	0.41	+0.6
2,144,182	+		BBR_RS19440	0.41	+0.0
2,144,188	-		BBR_RS19440	0.41	+0.1
2,144,188	-		BBR_RS19440	0.41	+0.9
2,144,188	-		BBR_RS19440	0.41	-0.5
2,144,188	-		BBR_RS19440	0.41	+1.0
2,144,188	-		BBR_RS19440	0.41	+0.0
2,144,190	-		BBR_RS19440	0.41	+0.8
2,144,192	+		BBR_RS19440	0.41	-1.0
2,144,192	+		BBR_RS19440	0.41	+1.1
2,144,200	-		BBR_RS19440	0.42	+0.7
2,144,200	-		BBR_RS19440	0.42	+0.1
2,144,200	-		BBR_RS19440	0.42	+3.2
2,144,200	-		BBR_RS19440	0.42	+0.4
2,144,216	-		BBR_RS19440	0.43	-0.8
2,144,216	-		BBR_RS19440	0.43	+1.4
2,144,238	+		BBR_RS19440	0.45	-0.1
2,144,238	+		BBR_RS19440	0.45	-1.1
2,144,241	-		BBR_RS19440	0.45	+0.6
2,144,293	-		BBR_RS19440	0.49	+0.1
2,144,293	-		BBR_RS19440	0.49	+0.3
2,144,342	+		BBR_RS19440	0.53	-0.5
2,144,342	+		BBR_RS19440	0.53	+3.0
2,144,349	-		BBR_RS19440	0.54	+0.4
2,144,349	-		BBR_RS19440	0.54	+0.3
2,144,384	-		BBR_RS19440	0.57	-1.9
2,144,403	-		BBR_RS19440	0.58	+0.2
2,144,409	+		BBR_RS19440	0.59	-1.5
2,144,409	+		BBR_RS19440	0.59	+0.4
2,144,409	+		BBR_RS19440	0.59	-0.4
2,144,409	+		BBR_RS19440	0.59	-0.8
2,144,417	-		BBR_RS19440	0.59	-0.1
2,144,417	-		BBR_RS19440	0.59	-0.3
2,144,417	-		BBR_RS19440	0.59	-0.7
2,144,417	-		BBR_RS19440	0.59	+0.3
2,144,419	-		BBR_RS19440	0.59	+0.6
2,144,432	-		BBR_RS19440	0.60	+1.2
2,144,443	-		BBR_RS19440	0.61	-0.0
2,144,443	-		BBR_RS19440	0.61	+3.0
2,144,443	-		BBR_RS19440	0.61	+3.5
2,144,450	+		BBR_RS19440	0.62	+0.3
2,144,472	+		BBR_RS19440	0.63	+0.2
2,144,496	+		BBR_RS19440	0.65	-1.0
2,144,503	+		BBR_RS19440	0.66	+0.3
2,144,511	+		BBR_RS19440	0.67	+0.2
2,144,511	-		BBR_RS19440	0.67	+0.7
2,144,511	-		BBR_RS19440	0.67	+0.1
2,144,516	+		BBR_RS19440	0.67	-1.5
2,144,527	+		BBR_RS19440	0.68	+3.7
2,144,530	-		BBR_RS19440	0.68	-0.4
2,144,536	+		BBR_RS19440	0.69	-1.7
2,144,542	-		BBR_RS19440	0.69	+0.7
2,144,552	-		BBR_RS19440	0.70	+1.6
2,144,554	+		BBR_RS19440	0.70	-0.9
2,144,584	+		BBR_RS19440	0.72	+0.5
2,144,584	-		BBR_RS19440	0.72	-0.1
2,144,598	-		BBR_RS19440	0.73	+1.2
2,144,607	+		BBR_RS19440	0.74	+0.8
2,144,607	+		BBR_RS19440	0.74	-0.2
2,144,641	-		BBR_RS19440	0.77	+3.5
2,144,669	+		BBR_RS19440	0.79	-1.7
2,144,674	+		BBR_RS19440	0.79	-0.1
2,144,674	+		BBR_RS19440	0.79	-0.0
2,144,674	+		BBR_RS19440	0.79	-2.7
2,144,688	+		BBR_RS19440	0.81	+1.0
2,144,698	-		BBR_RS19440	0.81	+0.1
2,144,700	+		BBR_RS19440	0.82	-1.7
2,144,717	-		BBR_RS19440	0.83	+0.4
2,144,719	+		BBR_RS19440	0.83	-0.4
2,144,723	+		BBR_RS19440	0.83	-1.0
2,144,737	-		BBR_RS19440	0.84	+0.4
2,144,760	+		BBR_RS19440	0.86	+0.8
2,144,764	+		BBR_RS19440	0.87	+0.4
2,144,772	-		BBR_RS19440	0.87	+0.2
2,144,775	+		BBR_RS19440	0.87	+0.2
2,144,775	+		BBR_RS19440	0.87	-1.4
2,144,784	+		BBR_RS19440	0.88	-0.0
2,144,784	+		BBR_RS19440	0.88	+3.1
2,144,793	+		BBR_RS19440	0.89	+3.3
2,144,795	+		BBR_RS19440	0.89	-0.5
2,144,795	+		BBR_RS19440	0.89	-0.0
2,144,801	-		BBR_RS19440	0.90	-0.5
2,144,803	-		BBR_RS19440	0.90	+0.8
2,144,821	+				+0.2
2,144,828	+				+1.6
2,144,831	+				-1.8
2,144,831	+				-0.0
2,144,831	+				+0.0
2,144,831	+				-1.1
2,144,831	+				+0.0
2,144,831	+				+0.1
2,144,831	+				+0.9
2,144,839	-				+0.1
2,144,839	-				-0.6
2,144,839	-				-0.6
2,144,839	-				+0.5
2,144,844	-				-0.4
2,144,885	+				-1.1
2,144,900	-				+3.9
2,144,928	+				-0.3
2,144,944	-				+1.0
2,144,945	+				-0.4
2,144,950	+				+0.4
2,144,950	+				+0.3
2,144,953	-				+1.5
2,144,953	-				-1.1
2,144,953	-				+0.2
2,144,953	-				+0.4
2,144,956	+				-0.2
2,144,956	+				+0.4
2,144,964	+				-0.9
2,144,964	-				+0.8
2,144,964	-				+0.3
2,144,964	-				+0.4
2,144,979	+				+0.6
2,144,982	-				+0.2
2,144,986	+				-0.1
2,144,987	-				-0.2
2,145,000	+				+1.3
2,145,002	+				-0.2
2,145,005	+				+0.4
2,145,008	-				-0.4
2,145,008	-				+1.3
2,145,008	-				+1.1
2,145,010	-				+0.1
2,145,010	-				+1.8
2,145,020	-				+0.6
2,145,026	+				-0.4
2,145,029	-				-0.1
2,145,031	+				-0.5
2,145,031	+				+0.1
2,145,034	-				+0.4
2,145,034	-				-1.3
2,145,034	-				-0.4
2,145,036	+				+2.8
2,145,036	+				-2.6
2,145,036	+				-0.1
2,145,036	+				-0.9
2,145,036	+				+2.9
2,145,044	-				+0.5
2,145,044	-				-0.5
2,145,060	-				-0.0
2,145,062	-				+0.8
2,145,062	-				-1.1
2,145,067	+				+2.8
2,145,107	-				-1.6
2,145,118	+				+0.6
2,145,120	+				-0.0
2,145,153	+		BBR_RS19445	0.11	-1.2
2,145,160	+		BBR_RS19445	0.12	-0.1
2,145,160	+		BBR_RS19445	0.12	-0.6
2,145,160	+		BBR_RS19445	0.12	-0.6
2,145,160	+		BBR_RS19445	0.12	+1.1
2,145,160	+		BBR_RS19445	0.12	+0.1
2,145,160	+		BBR_RS19445	0.12	+0.9
2,145,160	+		BBR_RS19445	0.12	+0.0
2,145,160	+		BBR_RS19445	0.12	+0.0
2,145,160	+		BBR_RS19445	0.12	-0.6
2,145,168	-		BBR_RS19445	0.12	-2.5
2,145,168	-		BBR_RS19445	0.12	-1.5
2,145,168	-		BBR_RS19445	0.12	+2.3
2,145,168	-		BBR_RS19445	0.12	+0.7
2,145,168	-		BBR_RS19445	0.12	-0.1
2,145,168	-		BBR_RS19445	0.12	+2.9
2,145,168	-		BBR_RS19445	0.12	-2.2
2,145,168	-		BBR_RS19445	0.12	-1.4
2,145,168	-		BBR_RS19445	0.12	-3.1
2,145,168	-		BBR_RS19445	0.12	-0.9
2,145,168	-		BBR_RS19445	0.12	-0.1
2,145,182	+		BBR_RS19445	0.14	+1.1
2,145,225	+		BBR_RS19445	0.17	+0.9
2,145,233	-		BBR_RS19445	0.18	-0.4
2,145,267	+		BBR_RS19445	0.21	+0.7
2,145,271	+		BBR_RS19445	0.21	-1.0
2,145,271	+		BBR_RS19445	0.21	+1.0
2,145,277	+		BBR_RS19445	0.22	+0.1
2,145,288	+		BBR_RS19445	0.23	-1.8
2,145,292	+		BBR_RS19445	0.23	+0.2
2,145,297	+		BBR_RS19445	0.24	+1.2
2,145,305	-		BBR_RS19445	0.24	+0.3
2,145,320	-		BBR_RS19445	0.26	+0.4
2,145,332	-		BBR_RS19445	0.27	-1.0
2,145,334	-		BBR_RS19445	0.27	+0.3
2,145,347	+		BBR_RS19445	0.28	+0.0
2,145,355	+		BBR_RS19445	0.29	-0.7
2,145,355	-		BBR_RS19445	0.29	-0.3
2,145,356	+		BBR_RS19445	0.29	+2.8
2,145,356	+		BBR_RS19445	0.29	-0.1
2,145,364	-		BBR_RS19445	0.30	+0.0
2,145,364	-		BBR_RS19445	0.30	-0.5
2,145,366	+		BBR_RS19445	0.30	+0.5
2,145,366	+		BBR_RS19445	0.30	+0.8
2,145,375	-		BBR_RS19445	0.31	-0.1
2,145,381	-		BBR_RS19445	0.31	-1.4
2,145,396	+		BBR_RS19445	0.32	+1.7
2,145,417	+		BBR_RS19445	0.34	+0.3
2,145,432	-		BBR_RS19445	0.36	-0.3
2,145,465	-		BBR_RS19445	0.39	-1.3
2,145,467	+		BBR_RS19445	0.39	+0.3
2,145,475	-		BBR_RS19445	0.39	-1.6
2,145,475	-		BBR_RS19445	0.39	-0.4
2,145,520	+		BBR_RS19445	0.43	+2.5
2,145,530	-		BBR_RS19445	0.44	+3.4
2,145,530	-		BBR_RS19445	0.44	-1.3
2,145,531	+		BBR_RS19445	0.44	-0.6
2,145,540	-		BBR_RS19445	0.45	-0.7
2,145,540	-		BBR_RS19445	0.45	-0.3
2,145,548	+		BBR_RS19445	0.46	+0.7
2,145,553	+		BBR_RS19445	0.46	+0.9
2,145,556	+		BBR_RS19445	0.47	+0.8
2,145,558	+		BBR_RS19445	0.47	+3.1
2,145,571	+		BBR_RS19445	0.48	-0.2
2,145,588	-		BBR_RS19445	0.49	-0.2
2,145,588	-		BBR_RS19445	0.49	+0.0
2,145,588	-		BBR_RS19445	0.49	+1.8
2,145,594	+		BBR_RS19445	0.50	+0.7
2,145,594	+		BBR_RS19445	0.50	-0.2
2,145,596	+		BBR_RS19445	0.50	+0.2
2,145,596	+		BBR_RS19445	0.50	+0.3
2,145,596	+		BBR_RS19445	0.50	+0.2
2,145,596	+		BBR_RS19445	0.50	+0.1
2,145,596	+		BBR_RS19445	0.50	+0.2
2,145,598	+		BBR_RS19445	0.50	+0.2
2,145,598	+		BBR_RS19445	0.50	+2.1
2,145,599	+		BBR_RS19445	0.50	-1.3
2,145,601	+		BBR_RS19445	0.51	+0.6
2,145,602	-		BBR_RS19445	0.51	-0.0
2,145,607	-		BBR_RS19445	0.51	-2.4
2,145,607	-		BBR_RS19445	0.51	+1.6
2,145,607	-		BBR_RS19445	0.51	+1.6
2,145,609	-		BBR_RS19445	0.51	+0.4
2,145,609	-		BBR_RS19445	0.51	+0.8
2,145,609	-		BBR_RS19445	0.51	-1.7
2,145,609	-		BBR_RS19445	0.51	-0.3
2,145,628	+		BBR_RS19445	0.53	-2.1
2,145,636	+		BBR_RS19445	0.54	-0.8
2,145,654	-		BBR_RS19445	0.55	-0.7
2,145,660	+		BBR_RS19445	0.56	+1.1
2,145,662	+		BBR_RS19445	0.56	-0.5
2,145,741	+		BBR_RS19445	0.63	+0.1
2,145,743	-		BBR_RS19445	0.63	-0.4
2,145,749	-		BBR_RS19445	0.64	-0.1
2,145,772	-		BBR_RS19445	0.66	-0.7
2,145,772	-		BBR_RS19445	0.66	-0.1
2,145,784	+		BBR_RS19445	0.67	-0.5
2,145,784	+		BBR_RS19445	0.67	+0.8
2,145,784	+		BBR_RS19445	0.67	-1.3
2,145,784	+		BBR_RS19445	0.67	-0.6
2,145,789	+		BBR_RS19445	0.67	-1.7
2,145,792	-		BBR_RS19445	0.67	+0.2
2,145,792	-		BBR_RS19445	0.67	+0.0
2,145,817	+		BBR_RS19445	0.70	+2.9
2,145,817	+		BBR_RS19445	0.70	+1.6
2,145,825	-		BBR_RS19445	0.70	-0.2
2,145,826	-		BBR_RS19445	0.70	-0.1
2,145,834	+		BBR_RS19445	0.71	-1.2
2,145,834	+		BBR_RS19445	0.71	+0.3
2,145,850	+		BBR_RS19445	0.72	+0.2
2,145,850	+		BBR_RS19445	0.72	-0.5
2,145,850	+		BBR_RS19445	0.72	+4.0
2,145,861	+		BBR_RS19445	0.73	+0.6
2,145,868	-		BBR_RS19445	0.74	+0.6
2,145,868	-		BBR_RS19445	0.74	+0.8
2,145,883	+		BBR_RS19445	0.75	-0.9
2,145,883	+		BBR_RS19445	0.75	+0.5
2,145,891	-		BBR_RS19445	0.76	+1.6
2,145,907	-		BBR_RS19445	0.78	+0.7
2,145,912	-		BBR_RS19445	0.78	+0.2
2,145,915	-		BBR_RS19445	0.78	+0.4
2,145,944	-		BBR_RS19445	0.81	+1.1
2,145,972	+		BBR_RS19445	0.83	+0.4
2,145,982	+		BBR_RS19445	0.84	+0.3
2,145,982	+		BBR_RS19445	0.84	+0.5
2,145,982	+		BBR_RS19445	0.84	+0.1
2,145,982	+		BBR_RS19445	0.84	+3.7
2,145,987	+		BBR_RS19445	0.85	-1.3
2,145,990	+		BBR_RS19445	0.85	-1.2
2,145,995	-		BBR_RS19445	0.85	+1.1
2,145,997	+		BBR_RS19445	0.85	-0.4
2,146,001	+		BBR_RS19445	0.86	-1.4
2,146,009	-		BBR_RS19445	0.87	-2.0
2,146,009	-		BBR_RS19445	0.87	+2.2
2,146,016	-		BBR_RS19445	0.87	+0.6
2,146,030	+		BBR_RS19445	0.88	+0.8
2,146,037	+		BBR_RS19445	0.89	+0.0
2,146,060	-				-0.5
2,146,064	+				+0.7
2,146,088	+				-0.0
2,146,096	-				+2.8
2,146,096	-				+2.7
2,146,096	-				-1.5
2,146,107	-				-1.1
2,146,107	-				-0.4
2,146,124	+				-1.6
2,146,137	-				+0.2
2,146,146	+				+0.7
2,146,146	+				-0.5
2,146,154	-				+0.2
2,146,162	-				+1.5
2,146,217	-				-1.2
2,146,238	+				+0.5
2,146,238	+				+0.2
2,146,241	-				+0.2
2,146,241	-				+0.6
2,146,241	-				-0.7
2,146,241	-				+0.7
2,146,241	-				+0.7
2,146,243	+				+0.3
2,146,243	-				-0.9
2,146,243	-				+0.4
2,146,251	-				-1.0
2,146,327	-				-1.2
2,146,359	-				+0.6
2,146,364	-				+0.9
2,146,368	+				+0.9
2,146,368	+				-0.5
2,146,368	+				+3.0
2,146,368	+				-0.1
2,146,368	+				+0.2
2,146,373	+				-1.2
2,146,376	-				+1.4
2,146,376	-				-1.6
2,146,376	-				-1.4
2,146,376	-				-1.1
2,146,376	-				+2.6
2,146,388	-				+0.6
2,146,394	+				+2.1
2,146,545	-		BBR_RS19450	0.16	-1.3
2,146,856	-		BBR_RS19450	0.35	+0.4
2,146,880	-		BBR_RS19450	0.36	-1.5