Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16925

Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS16920 and BBR_RS16925 overlap by 14 nucleotidesBBR_RS16925 and BBR_RS16930 are separated by 55 nucleotides BBR_RS16920: BBR_RS16920 - putative lipid II flippase FtsW, at 1,567,820 to 1,569,037 _RS16920 BBR_RS16925: BBR_RS16925 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 1,569,024 to 1,570,469 _RS16925 BBR_RS16930: BBR_RS16930 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 1,570,525 to 1,571,631 _RS16930 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -3 -2 -1 0 1at 1568.978 kb on - strandat 1570.464 kb on - strandat 1570.510 kb on - strandat 1570.511 kb on - strandat 1570.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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1,568,978 - -1.9
1,570,464 - -3.7
1,570,510 - -2.9
1,570,511 - -0.2
1,570,537 - +0.6

Or see this region's nucleotide sequence